Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0910

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0909 and DvMF_0910 are separated by 290 nucleotidesDvMF_0910 and DvMF_0911 are separated by 224 nucleotidesDvMF_0911 and DvMF_0912 are separated by 109 nucleotides DvMF_0909: DvMF_0909 - cytidylate kinase (RefSeq), at 1,093,747 to 1,094,406 _0909 DvMF_0910: DvMF_0910 - uracil-xanthine permease (RefSeq), at 1,094,697 to 1,095,983 _0910 DvMF_0911: DvMF_0911 - uracil phosphoribosyltransferase (RefSeq), at 1,096,208 to 1,096,834 _0911 DvMF_0912: DvMF_0912 - pseudouridine synthase, RluA family (RefSeq), at 1,096,944 to 1,098,620 _0912 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -1 0 1at 1093.928 kb on + strand, within DvMF_0909at 1094.251 kb on + strand, within DvMF_0909at 1094.272 kb on + strand, within DvMF_0909at 1094.784 kb on + strandat 1094.791 kb on + strandat 1095.247 kb on - strand, within DvMF_0910at 1095.311 kb on + strand, within DvMF_0910at 1095.387 kb on + strand, within DvMF_0910at 1095.395 kb on - strand, within DvMF_0910at 1095.435 kb on + strand, within DvMF_0910at 1095.443 kb on - strand, within DvMF_0910at 1095.443 kb on - strand, within DvMF_0910at 1095.475 kb on - strand, within DvMF_0910at 1095.572 kb on + strand, within DvMF_0910at 1095.600 kb on + strand, within DvMF_0910at 1095.720 kb on + strand, within DvMF_0910at 1095.777 kb on + strand, within DvMF_0910at 1095.814 kb on - strand, within DvMF_0910at 1096.368 kb on + strand, within DvMF_0911at 1096.507 kb on + strand, within DvMF_0911at 1096.507 kb on + strand, within DvMF_0911at 1096.507 kb on + strand, within DvMF_0911at 1096.515 kb on - strand, within DvMF_0911at 1096.515 kb on - strand, within DvMF_0911at 1096.594 kb on + strand, within DvMF_0911at 1096.615 kb on - strand, within DvMF_0911at 1096.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,093,928 + DvMF_0909 0.27 -0.3
1,094,251 + DvMF_0909 0.76 -0.6
1,094,272 + DvMF_0909 0.80 +0.3
1,094,784 + -0.1
1,094,791 + +0.1
1,095,247 - DvMF_0910 0.43 +0.1
1,095,311 + DvMF_0910 0.48 -0.4
1,095,387 + DvMF_0910 0.54 +0.3
1,095,395 - DvMF_0910 0.54 +0.0
1,095,435 + DvMF_0910 0.57 +0.9
1,095,443 - DvMF_0910 0.58 -0.3
1,095,443 - DvMF_0910 0.58 -0.0
1,095,475 - DvMF_0910 0.60 -0.3
1,095,572 + DvMF_0910 0.68 -0.4
1,095,600 + DvMF_0910 0.70 -0.2
1,095,720 + DvMF_0910 0.79 -0.6
1,095,777 + DvMF_0910 0.84 -1.1
1,095,814 - DvMF_0910 0.87 -0.4
1,096,368 + DvMF_0911 0.26 -0.2
1,096,507 + DvMF_0911 0.48 +0.5
1,096,507 + DvMF_0911 0.48 -0.2
1,096,507 + DvMF_0911 0.48 -0.2
1,096,515 - DvMF_0911 0.49 -0.1
1,096,515 - DvMF_0911 0.49 -0.8
1,096,594 + DvMF_0911 0.62 +0.4
1,096,615 - DvMF_0911 0.65 +0.2
1,096,797 + -0.1

Or see this region's nucleotide sequence