Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0803

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0802 and DvMF_0803 are separated by 3 nucleotidesDvMF_0803 and DvMF_0804 are separated by 318 nucleotides DvMF_0802: DvMF_0802 - ABC transporter related (RefSeq), at 966,101 to 967,405 _0802 DvMF_0803: DvMF_0803 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 967,409 to 969,139 _0803 DvMF_0804: DvMF_0804 - UspA domain protein (RefSeq), at 969,458 to 969,874 _0804 Position (kb) 967 968 969 970Strain fitness (log2 ratio) -1 0 1at 966.561 kb on - strand, within DvMF_0802at 966.786 kb on + strand, within DvMF_0802at 966.810 kb on - strand, within DvMF_0802at 967.030 kb on + strand, within DvMF_0802at 967.030 kb on + strand, within DvMF_0802at 967.038 kb on - strand, within DvMF_0802at 967.048 kb on + strand, within DvMF_0802at 967.056 kb on - strand, within DvMF_0802at 967.139 kb on - strand, within DvMF_0802at 967.156 kb on - strand, within DvMF_0802at 967.181 kb on - strand, within DvMF_0802at 967.205 kb on - strand, within DvMF_0802at 967.210 kb on - strand, within DvMF_0802at 967.343 kb on - strandat 967.377 kb on - strandat 967.681 kb on + strand, within DvMF_0803at 967.694 kb on + strand, within DvMF_0803at 967.735 kb on + strand, within DvMF_0803at 967.735 kb on + strand, within DvMF_0803at 967.743 kb on - strand, within DvMF_0803at 967.868 kb on - strand, within DvMF_0803at 967.917 kb on + strand, within DvMF_0803at 967.933 kb on - strand, within DvMF_0803at 967.982 kb on - strand, within DvMF_0803at 968.119 kb on - strand, within DvMF_0803at 968.164 kb on + strand, within DvMF_0803at 968.251 kb on - strand, within DvMF_0803at 968.360 kb on - strand, within DvMF_0803at 968.379 kb on + strand, within DvMF_0803at 968.444 kb on - strand, within DvMF_0803at 968.461 kb on + strand, within DvMF_0803at 968.594 kb on + strand, within DvMF_0803at 968.768 kb on - strand, within DvMF_0803at 968.985 kb on - strandat 969.350 kb on - strandat 969.423 kb on + strandat 969.544 kb on + strand, within DvMF_0804at 969.651 kb on + strand, within DvMF_0804at 969.651 kb on + strand, within DvMF_0804at 969.710 kb on - strand, within DvMF_0804at 969.710 kb on - strand, within DvMF_0804at 969.769 kb on + strand, within DvMF_0804at 969.777 kb on - strand, within DvMF_0804at 969.816 kb on + strand, within DvMF_0804at 969.816 kb on + strand, within DvMF_0804at 969.822 kb on + strand, within DvMF_0804

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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966,561 - DvMF_0802 0.35 -0.2
966,786 + DvMF_0802 0.52 -0.2
966,810 - DvMF_0802 0.54 -0.4
967,030 + DvMF_0802 0.71 -0.6
967,030 + DvMF_0802 0.71 -0.5
967,038 - DvMF_0802 0.72 -0.3
967,048 + DvMF_0802 0.73 -0.2
967,056 - DvMF_0802 0.73 -0.6
967,139 - DvMF_0802 0.80 -0.6
967,156 - DvMF_0802 0.81 +0.1
967,181 - DvMF_0802 0.83 -0.1
967,205 - DvMF_0802 0.85 -0.8
967,210 - DvMF_0802 0.85 -0.4
967,343 - -0.4
967,377 - +0.4
967,681 + DvMF_0803 0.16 -0.1
967,694 + DvMF_0803 0.16 -0.2
967,735 + DvMF_0803 0.19 +0.1
967,735 + DvMF_0803 0.19 -0.1
967,743 - DvMF_0803 0.19 -0.2
967,868 - DvMF_0803 0.27 -0.2
967,917 + DvMF_0803 0.29 -0.7
967,933 - DvMF_0803 0.30 +0.4
967,982 - DvMF_0803 0.33 -0.2
968,119 - DvMF_0803 0.41 -0.6
968,164 + DvMF_0803 0.44 -0.3
968,251 - DvMF_0803 0.49 +0.2
968,360 - DvMF_0803 0.55 +0.0
968,379 + DvMF_0803 0.56 -0.0
968,444 - DvMF_0803 0.60 -0.5
968,461 + DvMF_0803 0.61 -0.1
968,594 + DvMF_0803 0.68 +0.4
968,768 - DvMF_0803 0.79 -0.3
968,985 - -0.7
969,350 - -0.5
969,423 + -0.5
969,544 + DvMF_0804 0.21 -1.2
969,651 + DvMF_0804 0.46 +0.1
969,651 + DvMF_0804 0.46 -0.2
969,710 - DvMF_0804 0.60 -0.5
969,710 - DvMF_0804 0.60 -0.7
969,769 + DvMF_0804 0.75 -0.0
969,777 - DvMF_0804 0.76 -0.7
969,816 + DvMF_0804 0.86 -0.4
969,816 + DvMF_0804 0.86 -0.4
969,822 + DvMF_0804 0.87 -1.0

Or see this region's nucleotide sequence