Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0182 and DvMF_0183 are separated by 234 nucleotides DvMF_0183 and DvMF_0184 are separated by 132 nucleotides DvMF_0184 and DvMF_0185 are separated by 57 nucleotides DvMF_0185 and DvMF_0186 are separated by 84 nucleotides
DvMF_0182: DvMF_0182 - hypothetical protein (RefSeq), at 199,674 to 199,892
_0182
DvMF_0183: DvMF_0183 - Ferroxidase (RefSeq), at 200,127 to 200,642
_0183
DvMF_0184: DvMF_0184 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 200,775 to 202,466
_0184
DvMF_0185: DvMF_0185 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit (RefSeq), at 202,524 to 203,375
_0185
DvMF_0186: DvMF_0186 - hypothetical protein (RefSeq), at 203,460 to 203,807
_0186
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -2
-1
0
1 at 199.912 kb on + strand at 199.933 kb on - strand at 200.114 kb on + strand at 200.201 kb on + strand, within DvMF_0183 at 200.279 kb on - strand, within DvMF_0183 at 200.571 kb on - strand, within DvMF_0183 at 200.609 kb on + strand at 200.795 kb on - strand at 200.856 kb on + strand at 200.872 kb on + strand at 201.083 kb on + strand, within DvMF_0184 at 201.258 kb on - strand, within DvMF_0184 at 201.474 kb on - strand, within DvMF_0184 at 201.782 kb on - strand, within DvMF_0184 at 202.138 kb on - strand, within DvMF_0184 at 202.261 kb on + strand, within DvMF_0184 at 202.279 kb on - strand, within DvMF_0184 at 202.279 kb on - strand, within DvMF_0184 at 202.295 kb on + strand, within DvMF_0184 at 202.295 kb on + strand, within DvMF_0184 at 202.303 kb on - strand at 202.407 kb on + strand at 202.461 kb on + strand at 202.558 kb on - strand at 202.747 kb on + strand, within DvMF_0185 at 202.981 kb on - strand, within DvMF_0185 at 203.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 199,912 + -0.4 199,933 - -0.1 200,114 + -0.4 200,201 + DvMF_0183 0.14 -0.2 200,279 - DvMF_0183 0.29 -0.4 200,571 - DvMF_0183 0.86 -1.8 200,609 + -0.3 200,795 - -0.4 200,856 + -0.5 200,872 + -0.3 201,083 + DvMF_0184 0.18 +0.2 201,258 - DvMF_0184 0.29 +0.7 201,474 - DvMF_0184 0.41 -0.2 201,782 - DvMF_0184 0.60 +0.1 202,138 - DvMF_0184 0.81 -0.4 202,261 + DvMF_0184 0.88 -0.2 202,279 - DvMF_0184 0.89 -0.2 202,279 - DvMF_0184 0.89 +0.0 202,295 + DvMF_0184 0.90 -0.6 202,295 + DvMF_0184 0.90 -0.4 202,303 - -0.3 202,407 + -0.3 202,461 + -0.4 202,558 - -0.4 202,747 + DvMF_0185 0.26 -0.4 202,981 - DvMF_0185 0.54 -0.0 203,371 - -0.3
Or see this region's nucleotide sequence