Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19535 and PFLU_RS19540 are separated by 113 nucleotides PFLU_RS19540 and PFLU_RS19545 overlap by 11 nucleotides
PFLU_RS19535: PFLU_RS19535 - hypothetical protein, at 4,417,609 to 4,419,120
_RS19535
PFLU_RS19540: PFLU_RS19540 - iron ABC transporter permease, at 4,419,234 to 4,420,298
_RS19540
PFLU_RS19545: PFLU_RS19545 - ABC transporter permease, at 4,420,288 to 4,422,750
_RS19545
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4418.348 kb on + strand, within PFLU_RS19535 at 4418.348 kb on + strand, within PFLU_RS19535 at 4418.349 kb on - strand, within PFLU_RS19535 at 4418.387 kb on + strand, within PFLU_RS19535 at 4418.387 kb on + strand, within PFLU_RS19535 at 4418.387 kb on + strand, within PFLU_RS19535 at 4418.387 kb on + strand, within PFLU_RS19535 at 4418.387 kb on + strand, within PFLU_RS19535 at 4418.387 kb on + strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.388 kb on - strand, within PFLU_RS19535 at 4418.522 kb on + strand, within PFLU_RS19535 at 4418.522 kb on + strand, within PFLU_RS19535 at 4418.522 kb on + strand, within PFLU_RS19535 at 4418.522 kb on + strand, within PFLU_RS19535 at 4418.523 kb on - strand, within PFLU_RS19535 at 4418.523 kb on - strand, within PFLU_RS19535 at 4418.523 kb on - strand, within PFLU_RS19535 at 4418.523 kb on - strand, within PFLU_RS19535 at 4418.525 kb on + strand, within PFLU_RS19535 at 4418.525 kb on + strand, within PFLU_RS19535 at 4418.525 kb on + strand, within PFLU_RS19535 at 4418.526 kb on - strand, within PFLU_RS19535 at 4418.543 kb on - strand, within PFLU_RS19535 at 4418.543 kb on - strand, within PFLU_RS19535 at 4418.578 kb on - strand, within PFLU_RS19535 at 4418.695 kb on + strand, within PFLU_RS19535 at 4418.747 kb on + strand, within PFLU_RS19535 at 4418.747 kb on + strand, within PFLU_RS19535 at 4418.747 kb on + strand, within PFLU_RS19535 at 4418.748 kb on - strand, within PFLU_RS19535 at 4418.748 kb on - strand, within PFLU_RS19535 at 4418.748 kb on - strand, within PFLU_RS19535 at 4419.039 kb on - strand at 4419.099 kb on + strand at 4419.100 kb on - strand at 4419.100 kb on - strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.135 kb on + strand at 4419.136 kb on - strand at 4419.136 kb on - strand at 4419.136 kb on - strand at 4419.136 kb on - strand at 4419.136 kb on - strand at 4419.136 kb on - strand at 4419.139 kb on + strand at 4419.139 kb on + strand at 4419.140 kb on - strand at 4419.185 kb on - strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.235 kb on + strand at 4419.236 kb on - strand at 4419.236 kb on - strand at 4419.236 kb on - strand at 4419.236 kb on - strand at 4419.236 kb on - strand at 4419.256 kb on + strand at 4419.256 kb on + strand at 4419.257 kb on - strand at 4419.302 kb on + strand at 4419.302 kb on + strand at 4419.302 kb on + strand at 4419.303 kb on - strand at 4419.303 kb on - strand at 4419.303 kb on - strand at 4419.303 kb on - strand at 4419.305 kb on + strand at 4419.305 kb on + strand at 4419.305 kb on + strand at 4419.305 kb on + strand at 4419.305 kb on + strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.306 kb on - strand at 4419.461 kb on + strand, within PFLU_RS19540 at 4419.461 kb on + strand, within PFLU_RS19540 at 4419.462 kb on - strand, within PFLU_RS19540 at 4419.462 kb on - strand, within PFLU_RS19540 at 4419.462 kb on - strand, within PFLU_RS19540 at 4419.462 kb on - strand, within PFLU_RS19540 at 4419.496 kb on + strand, within PFLU_RS19540 at 4419.496 kb on + strand, within PFLU_RS19540 at 4419.497 kb on - strand, within PFLU_RS19540 at 4419.646 kb on + strand, within PFLU_RS19540 at 4419.646 kb on + strand, within PFLU_RS19540 at 4419.700 kb on + strand, within PFLU_RS19540 at 4419.700 kb on + strand, within PFLU_RS19540 at 4419.700 kb on + strand, within PFLU_RS19540 at 4419.701 kb on - strand, within PFLU_RS19540 at 4419.701 kb on - strand, within PFLU_RS19540 at 4419.701 kb on - strand, within PFLU_RS19540 at 4419.704 kb on - strand, within PFLU_RS19540 at 4419.704 kb on - strand, within PFLU_RS19540 at 4419.704 kb on - strand, within PFLU_RS19540 at 4419.704 kb on - strand, within PFLU_RS19540 at 4419.704 kb on - strand, within PFLU_RS19540 at 4419.706 kb on + strand, within PFLU_RS19540 at 4419.706 kb on + strand, within PFLU_RS19540 at 4419.706 kb on + strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.707 kb on - strand, within PFLU_RS19540 at 4419.739 kb on + strand, within PFLU_RS19540 at 4419.952 kb on + strand, within PFLU_RS19540 at 4420.071 kb on + strand, within PFLU_RS19540 at 4420.071 kb on + strand, within PFLU_RS19540 at 4420.071 kb on + strand, within PFLU_RS19540 at 4420.072 kb on - strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.108 kb on + strand, within PFLU_RS19540 at 4420.109 kb on - strand, within PFLU_RS19540 at 4420.260 kb on + strand at 4420.260 kb on + strand at 4420.261 kb on - strand at 4420.337 kb on + strand at 4420.337 kb on + strand at 4420.337 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.518 kb on + strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.519 kb on - strand at 4420.552 kb on - strand, within PFLU_RS19545 at 4420.641 kb on + strand, within PFLU_RS19545 at 4420.642 kb on - strand, within PFLU_RS19545 at 4420.677 kb on + strand, within PFLU_RS19545 at 4420.756 kb on - strand, within PFLU_RS19545 at 4420.923 kb on - strand, within PFLU_RS19545 at 4420.923 kb on - strand, within PFLU_RS19545 at 4421.096 kb on + strand, within PFLU_RS19545 at 4421.097 kb on - strand, within PFLU_RS19545 at 4421.245 kb on + strand, within PFLU_RS19545 at 4421.245 kb on + strand, within PFLU_RS19545 at 4421.245 kb on + strand, within PFLU_RS19545 at 4421.245 kb on + strand, within PFLU_RS19545 at 4421.246 kb on - strand, within PFLU_RS19545 at 4421.249 kb on + strand, within PFLU_RS19545 at 4421.249 kb on + strand, within PFLU_RS19545 at 4421.283 kb on + strand, within PFLU_RS19545 at 4421.284 kb on - strand, within PFLU_RS19545 at 4421.284 kb on - strand, within PFLU_RS19545
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 4,418,348 + PFLU_RS19535 0.49 +0.0 4,418,348 + PFLU_RS19535 0.49 -1.6 4,418,349 - PFLU_RS19535 0.49 -0.4 4,418,387 + PFLU_RS19535 0.51 +0.7 4,418,387 + PFLU_RS19535 0.51 +1.2 4,418,387 + PFLU_RS19535 0.51 +0.5 4,418,387 + PFLU_RS19535 0.51 -0.4 4,418,387 + PFLU_RS19535 0.51 -1.1 4,418,387 + PFLU_RS19535 0.51 +0.7 4,418,388 - PFLU_RS19535 0.52 -0.3 4,418,388 - PFLU_RS19535 0.52 +0.2 4,418,388 - PFLU_RS19535 0.52 -0.3 4,418,388 - PFLU_RS19535 0.52 +0.0 4,418,388 - PFLU_RS19535 0.52 -0.9 4,418,388 - PFLU_RS19535 0.52 -1.9 4,418,388 - PFLU_RS19535 0.52 -0.5 4,418,388 - PFLU_RS19535 0.52 +0.6 4,418,388 - PFLU_RS19535 0.52 -0.0 4,418,388 - PFLU_RS19535 0.52 -1.8 4,418,522 + PFLU_RS19535 0.60 +0.6 4,418,522 + PFLU_RS19535 0.60 -1.8 4,418,522 + PFLU_RS19535 0.60 +2.0 4,418,522 + PFLU_RS19535 0.60 +0.3 4,418,523 - PFLU_RS19535 0.60 -1.1 4,418,523 - PFLU_RS19535 0.60 +1.5 4,418,523 - PFLU_RS19535 0.60 +1.0 4,418,523 - PFLU_RS19535 0.60 -1.6 4,418,525 + PFLU_RS19535 0.61 -1.2 4,418,525 + PFLU_RS19535 0.61 -1.4 4,418,525 + PFLU_RS19535 0.61 +1.2 4,418,526 - PFLU_RS19535 0.61 +1.6 4,418,543 - PFLU_RS19535 0.62 -2.1 4,418,543 - PFLU_RS19535 0.62 +0.6 4,418,578 - PFLU_RS19535 0.64 -0.4 4,418,695 + PFLU_RS19535 0.72 +0.1 4,418,747 + PFLU_RS19535 0.75 +0.2 4,418,747 + PFLU_RS19535 0.75 -1.9 4,418,747 + PFLU_RS19535 0.75 +0.2 4,418,748 - PFLU_RS19535 0.75 +0.3 4,418,748 - PFLU_RS19535 0.75 -2.4 4,418,748 - PFLU_RS19535 0.75 -2.2 4,419,039 - -0.8 4,419,099 + +0.7 4,419,100 - -0.4 4,419,100 - -1.0 4,419,135 + -0.5 4,419,135 + -0.3 4,419,135 + +0.9 4,419,135 + -2.4 4,419,135 + -0.6 4,419,135 + +0.6 4,419,135 + +0.4 4,419,135 + -1.3 4,419,135 + +1.4 4,419,135 + +1.1 4,419,136 - -0.7 4,419,136 - -1.8 4,419,136 - -0.4 4,419,136 - -1.9 4,419,136 - +2.2 4,419,136 - -0.4 4,419,139 + -0.5 4,419,139 + +0.7 4,419,140 - -0.6 4,419,185 - +0.2 4,419,235 + +0.5 4,419,235 + -0.4 4,419,235 + -0.9 4,419,235 + +0.1 4,419,235 + -0.1 4,419,235 + +1.2 4,419,235 + -0.4 4,419,235 + +0.5 4,419,236 - -1.6 4,419,236 - -0.6 4,419,236 - +1.3 4,419,236 - -0.1 4,419,236 - +0.4 4,419,256 + -0.8 4,419,256 + -1.1 4,419,257 - -0.6 4,419,302 + +0.1 4,419,302 + -0.8 4,419,302 + +0.3 4,419,303 - -1.6 4,419,303 - -0.7 4,419,303 - +0.2 4,419,303 - -0.6 4,419,305 + +0.2 4,419,305 + -0.2 4,419,305 + +0.0 4,419,305 + -0.7 4,419,305 + +0.6 4,419,306 - +0.8 4,419,306 - -0.3 4,419,306 - +0.3 4,419,306 - +1.2 4,419,306 - -0.2 4,419,306 - +1.1 4,419,306 - +0.1 4,419,306 - +0.5 4,419,306 - +1.2 4,419,306 - +0.9 4,419,306 - -0.3 4,419,461 + PFLU_RS19540 0.21 -2.6 4,419,461 + PFLU_RS19540 0.21 -0.3 4,419,462 - PFLU_RS19540 0.21 -1.5 4,419,462 - PFLU_RS19540 0.21 -0.9 4,419,462 - PFLU_RS19540 0.21 +0.2 4,419,462 - PFLU_RS19540 0.21 +0.5 4,419,496 + PFLU_RS19540 0.25 +0.5 4,419,496 + PFLU_RS19540 0.25 -0.9 4,419,497 - PFLU_RS19540 0.25 +0.1 4,419,646 + PFLU_RS19540 0.39 -1.0 4,419,646 + PFLU_RS19540 0.39 +1.2 4,419,700 + PFLU_RS19540 0.44 -0.6 4,419,700 + PFLU_RS19540 0.44 -0.9 4,419,700 + PFLU_RS19540 0.44 -0.8 4,419,701 - PFLU_RS19540 0.44 +0.6 4,419,701 - PFLU_RS19540 0.44 -1.7 4,419,701 - PFLU_RS19540 0.44 +0.1 4,419,704 - PFLU_RS19540 0.44 +0.9 4,419,704 - PFLU_RS19540 0.44 -1.4 4,419,704 - PFLU_RS19540 0.44 +0.7 4,419,704 - PFLU_RS19540 0.44 -0.4 4,419,704 - PFLU_RS19540 0.44 -0.1 4,419,706 + PFLU_RS19540 0.44 -1.3 4,419,706 + PFLU_RS19540 0.44 -0.1 4,419,706 + PFLU_RS19540 0.44 +0.9 4,419,707 - PFLU_RS19540 0.44 +0.7 4,419,707 - PFLU_RS19540 0.44 +0.3 4,419,707 - PFLU_RS19540 0.44 +2.1 4,419,707 - PFLU_RS19540 0.44 -2.4 4,419,707 - PFLU_RS19540 0.44 -0.4 4,419,707 - PFLU_RS19540 0.44 +0.7 4,419,707 - PFLU_RS19540 0.44 -0.4 4,419,739 + PFLU_RS19540 0.47 -0.3 4,419,952 + PFLU_RS19540 0.67 +1.5 4,420,071 + PFLU_RS19540 0.79 +0.0 4,420,071 + PFLU_RS19540 0.79 +0.4 4,420,071 + PFLU_RS19540 0.79 -0.9 4,420,072 - PFLU_RS19540 0.79 -0.4 4,420,108 + PFLU_RS19540 0.82 -0.2 4,420,108 + PFLU_RS19540 0.82 +0.6 4,420,108 + PFLU_RS19540 0.82 +1.1 4,420,108 + PFLU_RS19540 0.82 -1.9 4,420,108 + PFLU_RS19540 0.82 +0.1 4,420,108 + PFLU_RS19540 0.82 +0.2 4,420,108 + PFLU_RS19540 0.82 +0.8 4,420,109 - PFLU_RS19540 0.82 -0.5 4,420,260 + -1.2 4,420,260 + +0.5 4,420,261 - +0.7 4,420,337 + +1.6 4,420,337 + -0.6 4,420,337 + +0.2 4,420,518 + +0.0 4,420,518 + -1.1 4,420,518 + -0.2 4,420,518 + -0.8 4,420,518 + +2.2 4,420,518 + +0.6 4,420,518 + -2.6 4,420,518 + +0.8 4,420,518 + -0.8 4,420,518 + +0.3 4,420,518 + +0.2 4,420,518 + +1.5 4,420,518 + -0.1 4,420,518 + +0.2 4,420,519 - +0.1 4,420,519 - -0.2 4,420,519 - -1.9 4,420,519 - -1.4 4,420,519 - -0.5 4,420,519 - +0.1 4,420,519 - -0.3 4,420,519 - -1.0 4,420,519 - +0.2 4,420,519 - +0.1 4,420,519 - -0.4 4,420,519 - +0.8 4,420,519 - +0.2 4,420,552 - PFLU_RS19545 0.11 +1.2 4,420,641 + PFLU_RS19545 0.14 -0.5 4,420,642 - PFLU_RS19545 0.14 -0.4 4,420,677 + PFLU_RS19545 0.16 -1.8 4,420,756 - PFLU_RS19545 0.19 +0.2 4,420,923 - PFLU_RS19545 0.26 +0.1 4,420,923 - PFLU_RS19545 0.26 -1.1 4,421,096 + PFLU_RS19545 0.33 +0.3 4,421,097 - PFLU_RS19545 0.33 +1.1 4,421,245 + PFLU_RS19545 0.39 -0.8 4,421,245 + PFLU_RS19545 0.39 +0.6 4,421,245 + PFLU_RS19545 0.39 +0.0 4,421,245 + PFLU_RS19545 0.39 -1.2 4,421,246 - PFLU_RS19545 0.39 -0.1 4,421,249 + PFLU_RS19545 0.39 +0.0 4,421,249 + PFLU_RS19545 0.39 +0.3 4,421,283 + PFLU_RS19545 0.40 -0.1 4,421,284 - PFLU_RS19545 0.40 -0.4 4,421,284 - PFLU_RS19545 0.40 -0.8
Or see this region's nucleotide sequence