Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS16145 and PFLU_RS16150 overlap by 1 nucleotides PFLU_RS16150 and PFLU_RS16155 are separated by 31 nucleotides PFLU_RS16155 and PFLU_RS16160 are separated by 25 nucleotides PFLU_RS16160 and PFLU_RS16165 overlap by 4 nucleotides
PFLU_RS16145: PFLU_RS16145 - hypothetical protein, at 3,668,854 to 3,669,444
_RS16145
PFLU_RS16150: PFLU_RS16150 - hypothetical protein, at 3,669,444 to 3,670,142
_RS16150
PFLU_RS16155: PFLU_RS16155 - phosphate ABC transporter ATP-binding protein, at 3,670,174 to 3,670,986
_RS16155
PFLU_RS16160: PFLU_RS16160 - phosphate ABC transporter permease PstA, at 3,671,012 to 3,671,905
_RS16160
PFLU_RS16165: PFLU_RS16165 - phosphate ABC transporter permease subunit PstC, at 3,671,902 to 3,672,870
_RS16165
Position (kb) 3670
3671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3669.191 kb on + strand, within PFLU_RS16145 at 3669.191 kb on + strand, within PFLU_RS16145 at 3669.192 kb on - strand, within PFLU_RS16145 at 3669.192 kb on - strand, within PFLU_RS16145 at 3669.192 kb on - strand, within PFLU_RS16145 at 3669.192 kb on - strand, within PFLU_RS16145 at 3669.192 kb on - strand, within PFLU_RS16145 at 3669.218 kb on + strand, within PFLU_RS16145 at 3669.219 kb on - strand, within PFLU_RS16145 at 3669.219 kb on - strand, within PFLU_RS16145 at 3669.219 kb on - strand, within PFLU_RS16145 at 3669.304 kb on + strand, within PFLU_RS16145 at 3669.304 kb on + strand, within PFLU_RS16145 at 3669.304 kb on + strand, within PFLU_RS16145 at 3669.304 kb on + strand, within PFLU_RS16145 at 3669.304 kb on + strand, within PFLU_RS16145 at 3669.304 kb on + strand, within PFLU_RS16145 at 3669.305 kb on - strand, within PFLU_RS16145 at 3669.305 kb on - strand, within PFLU_RS16145 at 3669.305 kb on - strand, within PFLU_RS16145 at 3669.305 kb on - strand, within PFLU_RS16145 at 3669.384 kb on + strand, within PFLU_RS16145 at 3669.384 kb on + strand, within PFLU_RS16145 at 3669.384 kb on + strand, within PFLU_RS16145 at 3669.385 kb on - strand, within PFLU_RS16145 at 3669.385 kb on - strand, within PFLU_RS16145 at 3669.390 kb on + strand at 3669.435 kb on - strand at 3669.435 kb on - strand at 3669.435 kb on - strand at 3669.512 kb on + strand at 3669.513 kb on - strand at 3669.513 kb on - strand at 3669.513 kb on - strand at 3669.513 kb on - strand at 3669.513 kb on - strand at 3669.559 kb on + strand, within PFLU_RS16150 at 3669.559 kb on + strand, within PFLU_RS16150 at 3669.560 kb on - strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.590 kb on + strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.591 kb on - strand, within PFLU_RS16150 at 3669.594 kb on + strand, within PFLU_RS16150 at 3669.594 kb on + strand, within PFLU_RS16150 at 3669.594 kb on + strand, within PFLU_RS16150 at 3669.594 kb on + strand, within PFLU_RS16150 at 3669.595 kb on - strand, within PFLU_RS16150 at 3669.595 kb on - strand, within PFLU_RS16150 at 3669.643 kb on - strand, within PFLU_RS16150 at 3669.643 kb on - strand, within PFLU_RS16150 at 3669.676 kb on + strand, within PFLU_RS16150 at 3669.676 kb on + strand, within PFLU_RS16150 at 3669.676 kb on + strand, within PFLU_RS16150 at 3669.676 kb on + strand, within PFLU_RS16150 at 3669.676 kb on + strand, within PFLU_RS16150 at 3669.676 kb on + strand, within PFLU_RS16150 at 3669.677 kb on - strand, within PFLU_RS16150 at 3669.677 kb on - strand, within PFLU_RS16150 at 3669.677 kb on - strand, within PFLU_RS16150 at 3669.748 kb on + strand, within PFLU_RS16150 at 3669.748 kb on + strand, within PFLU_RS16150 at 3669.748 kb on + strand, within PFLU_RS16150 at 3669.749 kb on - strand, within PFLU_RS16150 at 3669.749 kb on - strand, within PFLU_RS16150 at 3669.749 kb on - strand, within PFLU_RS16150 at 3669.749 kb on - strand, within PFLU_RS16150 at 3669.796 kb on + strand, within PFLU_RS16150 at 3669.796 kb on + strand, within PFLU_RS16150 at 3669.797 kb on - strand, within PFLU_RS16150 at 3669.805 kb on + strand, within PFLU_RS16150 at 3669.805 kb on + strand, within PFLU_RS16150 at 3669.805 kb on + strand, within PFLU_RS16150 at 3669.807 kb on + strand, within PFLU_RS16150 at 3669.807 kb on + strand, within PFLU_RS16150 at 3669.808 kb on - strand, within PFLU_RS16150 at 3669.979 kb on + strand, within PFLU_RS16150 at 3669.979 kb on + strand, within PFLU_RS16150 at 3669.979 kb on + strand, within PFLU_RS16150 at 3669.979 kb on + strand, within PFLU_RS16150 at 3669.980 kb on - strand, within PFLU_RS16150 at 3669.980 kb on - strand, within PFLU_RS16150 at 3670.086 kb on + strand at 3670.086 kb on + strand at 3670.087 kb on - strand at 3670.196 kb on + strand at 3670.196 kb on + strand at 3670.196 kb on + strand at 3670.196 kb on + strand at 3670.197 kb on - strand at 3670.197 kb on - strand at 3670.197 kb on - strand at 3670.197 kb on - strand at 3670.262 kb on + strand, within PFLU_RS16155 at 3670.287 kb on + strand, within PFLU_RS16155 at 3670.364 kb on + strand, within PFLU_RS16155 at 3670.364 kb on + strand, within PFLU_RS16155 at 3670.364 kb on + strand, within PFLU_RS16155 at 3670.364 kb on + strand, within PFLU_RS16155 at 3670.365 kb on - strand, within PFLU_RS16155 at 3670.365 kb on - strand, within PFLU_RS16155 at 3670.608 kb on - strand, within PFLU_RS16155 at 3670.608 kb on - strand, within PFLU_RS16155 at 3670.691 kb on + strand, within PFLU_RS16155 at 3670.705 kb on + strand, within PFLU_RS16155 at 3670.705 kb on + strand, within PFLU_RS16155 at 3670.705 kb on + strand, within PFLU_RS16155 at 3670.727 kb on + strand, within PFLU_RS16155 at 3670.810 kb on + strand, within PFLU_RS16155 at 3670.811 kb on - strand, within PFLU_RS16155 at 3670.811 kb on - strand, within PFLU_RS16155 at 3670.811 kb on - strand, within PFLU_RS16155 at 3670.811 kb on - strand, within PFLU_RS16155 at 3670.811 kb on - strand, within PFLU_RS16155 at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.013 kb on + strand at 3671.014 kb on - strand at 3671.014 kb on - strand at 3671.014 kb on - strand at 3671.014 kb on - strand at 3671.017 kb on - strand at 3671.036 kb on - strand at 3671.047 kb on + strand at 3671.060 kb on + strand at 3671.070 kb on - strand at 3671.070 kb on - strand at 3671.136 kb on + strand, within PFLU_RS16160 at 3671.137 kb on - strand, within PFLU_RS16160 at 3671.137 kb on - strand, within PFLU_RS16160 at 3671.193 kb on + strand, within PFLU_RS16160 at 3671.193 kb on + strand, within PFLU_RS16160 at 3671.193 kb on + strand, within PFLU_RS16160 at 3671.202 kb on + strand, within PFLU_RS16160 at 3671.202 kb on + strand, within PFLU_RS16160 at 3671.203 kb on - strand, within PFLU_RS16160 at 3671.460 kb on + strand, within PFLU_RS16160 at 3671.460 kb on + strand, within PFLU_RS16160 at 3671.461 kb on - strand, within PFLU_RS16160 at 3671.461 kb on - strand, within PFLU_RS16160 at 3671.461 kb on - strand, within PFLU_RS16160 at 3671.490 kb on + strand, within PFLU_RS16160 at 3671.490 kb on + strand, within PFLU_RS16160 at 3671.566 kb on + strand, within PFLU_RS16160 at 3671.566 kb on + strand, within PFLU_RS16160 at 3671.566 kb on + strand, within PFLU_RS16160 at 3671.566 kb on + strand, within PFLU_RS16160 at 3671.567 kb on - strand, within PFLU_RS16160 at 3671.605 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.763 kb on + strand, within PFLU_RS16160 at 3671.764 kb on - strand, within PFLU_RS16160 at 3671.764 kb on - strand, within PFLU_RS16160 at 3671.764 kb on - strand, within PFLU_RS16160 at 3671.764 kb on - strand, within PFLU_RS16160 at 3671.764 kb on - strand, within PFLU_RS16160 at 3671.911 kb on - strand at 3671.927 kb on + strand at 3671.927 kb on + strand at 3671.928 kb on - strand at 3671.928 kb on - strand at 3671.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 3,669,191 + PFLU_RS16145 0.57 +0.6 3,669,191 + PFLU_RS16145 0.57 -0.4 3,669,192 - PFLU_RS16145 0.57 +1.3 3,669,192 - PFLU_RS16145 0.57 -0.8 3,669,192 - PFLU_RS16145 0.57 +0.8 3,669,192 - PFLU_RS16145 0.57 +0.5 3,669,192 - PFLU_RS16145 0.57 +0.6 3,669,218 + PFLU_RS16145 0.62 -0.4 3,669,219 - PFLU_RS16145 0.62 +0.5 3,669,219 - PFLU_RS16145 0.62 +0.8 3,669,219 - PFLU_RS16145 0.62 +0.2 3,669,304 + PFLU_RS16145 0.76 -1.2 3,669,304 + PFLU_RS16145 0.76 +1.2 3,669,304 + PFLU_RS16145 0.76 +0.7 3,669,304 + PFLU_RS16145 0.76 -0.7 3,669,304 + PFLU_RS16145 0.76 -0.4 3,669,304 + PFLU_RS16145 0.76 -0.8 3,669,305 - PFLU_RS16145 0.76 +0.4 3,669,305 - PFLU_RS16145 0.76 +1.0 3,669,305 - PFLU_RS16145 0.76 +0.6 3,669,305 - PFLU_RS16145 0.76 +0.8 3,669,384 + PFLU_RS16145 0.90 -1.2 3,669,384 + PFLU_RS16145 0.90 +1.8 3,669,384 + PFLU_RS16145 0.90 +1.7 3,669,385 - PFLU_RS16145 0.90 +0.1 3,669,385 - PFLU_RS16145 0.90 +0.5 3,669,390 + +1.1 3,669,435 - -0.4 3,669,435 - +0.4 3,669,435 - +0.1 3,669,512 + +0.8 3,669,513 - +0.0 3,669,513 - -1.0 3,669,513 - +0.2 3,669,513 - +0.4 3,669,513 - +1.8 3,669,559 + PFLU_RS16150 0.16 -0.2 3,669,559 + PFLU_RS16150 0.16 +0.5 3,669,560 - PFLU_RS16150 0.17 +0.3 3,669,590 + PFLU_RS16150 0.21 +0.4 3,669,590 + PFLU_RS16150 0.21 -0.5 3,669,590 + PFLU_RS16150 0.21 +1.0 3,669,590 + PFLU_RS16150 0.21 +0.8 3,669,590 + PFLU_RS16150 0.21 +0.6 3,669,590 + PFLU_RS16150 0.21 -0.0 3,669,590 + PFLU_RS16150 0.21 -0.5 3,669,590 + PFLU_RS16150 0.21 +0.7 3,669,590 + PFLU_RS16150 0.21 +0.2 3,669,590 + PFLU_RS16150 0.21 +0.2 3,669,590 + PFLU_RS16150 0.21 +1.3 3,669,591 - PFLU_RS16150 0.21 +0.2 3,669,591 - PFLU_RS16150 0.21 -0.0 3,669,591 - PFLU_RS16150 0.21 -0.4 3,669,591 - PFLU_RS16150 0.21 +1.6 3,669,591 - PFLU_RS16150 0.21 -2.8 3,669,591 - PFLU_RS16150 0.21 -0.9 3,669,591 - PFLU_RS16150 0.21 -0.8 3,669,591 - PFLU_RS16150 0.21 +0.1 3,669,591 - PFLU_RS16150 0.21 -0.2 3,669,591 - PFLU_RS16150 0.21 +1.8 3,669,591 - PFLU_RS16150 0.21 -0.3 3,669,591 - PFLU_RS16150 0.21 +0.2 3,669,591 - PFLU_RS16150 0.21 -1.2 3,669,591 - PFLU_RS16150 0.21 -2.0 3,669,591 - PFLU_RS16150 0.21 -0.8 3,669,591 - PFLU_RS16150 0.21 +0.4 3,669,591 - PFLU_RS16150 0.21 -0.8 3,669,591 - PFLU_RS16150 0.21 +0.2 3,669,594 + PFLU_RS16150 0.21 -2.1 3,669,594 + PFLU_RS16150 0.21 +0.4 3,669,594 + PFLU_RS16150 0.21 -1.6 3,669,594 + PFLU_RS16150 0.21 -0.4 3,669,595 - PFLU_RS16150 0.22 +1.9 3,669,595 - PFLU_RS16150 0.22 -0.2 3,669,643 - PFLU_RS16150 0.28 +1.3 3,669,643 - PFLU_RS16150 0.28 +0.5 3,669,676 + PFLU_RS16150 0.33 +0.0 3,669,676 + PFLU_RS16150 0.33 -0.5 3,669,676 + PFLU_RS16150 0.33 +1.0 3,669,676 + PFLU_RS16150 0.33 +1.1 3,669,676 + PFLU_RS16150 0.33 -0.0 3,669,676 + PFLU_RS16150 0.33 +1.8 3,669,677 - PFLU_RS16150 0.33 +0.6 3,669,677 - PFLU_RS16150 0.33 +2.4 3,669,677 - PFLU_RS16150 0.33 -1.5 3,669,748 + PFLU_RS16150 0.43 +0.3 3,669,748 + PFLU_RS16150 0.43 -2.4 3,669,748 + PFLU_RS16150 0.43 -1.2 3,669,749 - PFLU_RS16150 0.44 +0.2 3,669,749 - PFLU_RS16150 0.44 -0.8 3,669,749 - PFLU_RS16150 0.44 +0.8 3,669,749 - PFLU_RS16150 0.44 +0.6 3,669,796 + PFLU_RS16150 0.50 +0.1 3,669,796 + PFLU_RS16150 0.50 +0.2 3,669,797 - PFLU_RS16150 0.51 -1.2 3,669,805 + PFLU_RS16150 0.52 -2.0 3,669,805 + PFLU_RS16150 0.52 -1.3 3,669,805 + PFLU_RS16150 0.52 +2.3 3,669,807 + PFLU_RS16150 0.52 -1.6 3,669,807 + PFLU_RS16150 0.52 -1.1 3,669,808 - PFLU_RS16150 0.52 +0.8 3,669,979 + PFLU_RS16150 0.77 +1.1 3,669,979 + PFLU_RS16150 0.77 +1.2 3,669,979 + PFLU_RS16150 0.77 -2.2 3,669,979 + PFLU_RS16150 0.77 -0.6 3,669,980 - PFLU_RS16150 0.77 -0.9 3,669,980 - PFLU_RS16150 0.77 -1.4 3,670,086 + +0.5 3,670,086 + +0.3 3,670,087 - +1.0 3,670,196 + -1.2 3,670,196 + +1.1 3,670,196 + -0.4 3,670,196 + -0.8 3,670,197 - -0.1 3,670,197 - +0.3 3,670,197 - -0.2 3,670,197 - -0.1 3,670,262 + PFLU_RS16155 0.11 -0.3 3,670,287 + PFLU_RS16155 0.14 +0.8 3,670,364 + PFLU_RS16155 0.23 +0.5 3,670,364 + PFLU_RS16155 0.23 +0.6 3,670,364 + PFLU_RS16155 0.23 +0.3 3,670,364 + PFLU_RS16155 0.23 +0.4 3,670,365 - PFLU_RS16155 0.23 +0.8 3,670,365 - PFLU_RS16155 0.23 -0.5 3,670,608 - PFLU_RS16155 0.53 -1.5 3,670,608 - PFLU_RS16155 0.53 -0.0 3,670,691 + PFLU_RS16155 0.64 -0.2 3,670,705 + PFLU_RS16155 0.65 -0.1 3,670,705 + PFLU_RS16155 0.65 +0.1 3,670,705 + PFLU_RS16155 0.65 -0.3 3,670,727 + PFLU_RS16155 0.68 -1.8 3,670,810 + PFLU_RS16155 0.78 -0.2 3,670,811 - PFLU_RS16155 0.78 -0.5 3,670,811 - PFLU_RS16155 0.78 -0.5 3,670,811 - PFLU_RS16155 0.78 +0.6 3,670,811 - PFLU_RS16155 0.78 +1.4 3,670,811 - PFLU_RS16155 0.78 +0.8 3,671,013 + +0.6 3,671,013 + -0.9 3,671,013 + -0.5 3,671,013 + -0.8 3,671,013 + -0.3 3,671,013 + -0.4 3,671,013 + +0.0 3,671,013 + -1.5 3,671,013 + +0.1 3,671,013 + +0.1 3,671,013 + -1.2 3,671,014 - -2.5 3,671,014 - -0.9 3,671,014 - -0.4 3,671,014 - -2.5 3,671,017 - -1.5 3,671,036 - +0.6 3,671,047 + -0.1 3,671,060 + -0.3 3,671,070 - -0.5 3,671,070 - -2.2 3,671,136 + PFLU_RS16160 0.14 +0.4 3,671,137 - PFLU_RS16160 0.14 -1.5 3,671,137 - PFLU_RS16160 0.14 +0.4 3,671,193 + PFLU_RS16160 0.20 -0.8 3,671,193 + PFLU_RS16160 0.20 -0.4 3,671,193 + PFLU_RS16160 0.20 +0.5 3,671,202 + PFLU_RS16160 0.21 +0.6 3,671,202 + PFLU_RS16160 0.21 -0.6 3,671,203 - PFLU_RS16160 0.21 +0.6 3,671,460 + PFLU_RS16160 0.50 -0.2 3,671,460 + PFLU_RS16160 0.50 -2.2 3,671,461 - PFLU_RS16160 0.50 -1.5 3,671,461 - PFLU_RS16160 0.50 -0.3 3,671,461 - PFLU_RS16160 0.50 +0.1 3,671,490 + PFLU_RS16160 0.53 +1.0 3,671,490 + PFLU_RS16160 0.53 +0.8 3,671,566 + PFLU_RS16160 0.62 -1.1 3,671,566 + PFLU_RS16160 0.62 -0.5 3,671,566 + PFLU_RS16160 0.62 +0.4 3,671,566 + PFLU_RS16160 0.62 +0.2 3,671,567 - PFLU_RS16160 0.62 +0.6 3,671,605 + PFLU_RS16160 0.66 +1.0 3,671,763 + PFLU_RS16160 0.84 +0.2 3,671,763 + PFLU_RS16160 0.84 +0.8 3,671,763 + PFLU_RS16160 0.84 +1.1 3,671,763 + PFLU_RS16160 0.84 -0.8 3,671,763 + PFLU_RS16160 0.84 +1.3 3,671,763 + PFLU_RS16160 0.84 -0.4 3,671,763 + PFLU_RS16160 0.84 -0.2 3,671,763 + PFLU_RS16160 0.84 -0.6 3,671,764 - PFLU_RS16160 0.84 -0.8 3,671,764 - PFLU_RS16160 0.84 +1.8 3,671,764 - PFLU_RS16160 0.84 -2.0 3,671,764 - PFLU_RS16160 0.84 -0.2 3,671,764 - PFLU_RS16160 0.84 -0.1 3,671,911 - -1.5 3,671,927 + +0.8 3,671,927 + +0.1 3,671,928 - -1.7 3,671,928 - +0.8 3,671,928 - +4.0
Or see this region's nucleotide sequence