Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04700

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04695 and MMP_RS04700 are separated by 80 nucleotidesMMP_RS04700 and MMP_RS04705 are separated by 14 nucleotidesMMP_RS04705 and MMP_RS04710 are separated by 29 nucleotides MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303 _RS04695 MMP_RS04700: MMP_RS04700 - hypothetical protein, at 899,384 to 899,962 _RS04700 MMP_RS04705: MMP_RS04705 - ribonuclease Z, at 899,977 to 900,903 _RS04705 MMP_RS04710: MMP_RS04710 - hypothetical protein, at 900,933 to 901,325 _RS04710 Position (kb) 899 900Strain fitness (log2 ratio) -2 -1 0 1at 898.679 kb on - strand, within MMP_RS04695at 898.998 kb on - strand, within MMP_RS04695at 898.999 kb on + strand, within MMP_RS04695at 898.999 kb on + strand, within MMP_RS04695at 899.028 kb on - strand, within MMP_RS04695at 899.029 kb on + strand, within MMP_RS04695at 899.066 kb on + strand, within MMP_RS04695at 899.067 kb on - strand, within MMP_RS04695at 899.068 kb on + strand, within MMP_RS04695at 899.068 kb on + strand, within MMP_RS04695at 899.085 kb on + strand, within MMP_RS04695at 899.236 kb on + strandat 899.245 kb on + strandat 899.276 kb on - strandat 899.355 kb on - strandat 899.355 kb on - strandat 899.366 kb on - strandat 899.366 kb on - strandat 899.366 kb on - strandat 899.366 kb on - strandat 899.367 kb on + strandat 899.367 kb on + strandat 899.368 kb on - strandat 899.368 kb on - strandat 899.368 kb on - strandat 899.369 kb on + strandat 899.375 kb on - strandat 899.376 kb on + strandat 899.376 kb on + strandat 899.376 kb on + strandat 899.385 kb on - strandat 899.385 kb on - strandat 899.385 kb on - strandat 899.386 kb on + strandat 899.386 kb on + strandat 899.418 kb on + strandat 899.418 kb on + strandat 899.420 kb on - strandat 899.558 kb on - strand, within MMP_RS04700at 899.559 kb on + strand, within MMP_RS04700at 899.564 kb on - strand, within MMP_RS04700at 899.565 kb on + strand, within MMP_RS04700at 899.571 kb on - strand, within MMP_RS04700at 899.576 kb on - strand, within MMP_RS04700at 899.581 kb on - strand, within MMP_RS04700at 899.582 kb on + strand, within MMP_RS04700at 899.693 kb on + strand, within MMP_RS04700at 899.778 kb on - strand, within MMP_RS04700at 899.779 kb on + strand, within MMP_RS04700at 899.799 kb on + strand, within MMP_RS04700at 899.799 kb on + strand, within MMP_RS04700at 899.804 kb on - strand, within MMP_RS04700at 899.805 kb on + strand, within MMP_RS04700at 899.820 kb on + strand, within MMP_RS04700at 899.824 kb on - strand, within MMP_RS04700at 899.825 kb on + strand, within MMP_RS04700at 899.865 kb on + strand, within MMP_RS04700at 899.865 kb on + strand, within MMP_RS04700at 899.912 kb on - strandat 899.913 kb on + strandat 899.917 kb on - strandat 899.917 kb on - strandat 899.918 kb on + strandat 899.918 kb on + strandat 900.074 kb on + strandat 900.265 kb on - strandat 900.298 kb on - strandat 900.299 kb on + strandat 900.299 kb on + strandat 900.299 kb on + strandat 900.299 kb on + strandat 900.299 kb on + strandat 900.299 kb on + strandat 900.323 kb on + strandat 900.464 kb on - strandat 900.465 kb on + strandat 900.501 kb on - strandat 900.913 kb on - strandat 900.914 kb on + strandat 900.914 kb on + strandat 900.914 kb on + strandat 900.916 kb on + strandat 900.939 kb on - strandat 900.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
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898,679 - MMP_RS04695 0.38 -0.1
898,998 - MMP_RS04695 0.70 -0.4
898,999 + MMP_RS04695 0.70 -0.1
898,999 + MMP_RS04695 0.70 -0.6
899,028 - MMP_RS04695 0.73 -0.3
899,029 + MMP_RS04695 0.73 +0.1
899,066 + MMP_RS04695 0.76 -0.0
899,067 - MMP_RS04695 0.76 -0.2
899,068 + MMP_RS04695 0.77 -0.1
899,068 + MMP_RS04695 0.77 +0.8
899,085 + MMP_RS04695 0.78 +0.1
899,236 + +0.4
899,245 + +0.7
899,276 - -0.4
899,355 - +0.4
899,355 - -0.2
899,366 - -0.0
899,366 - -0.0
899,366 - -0.2
899,366 - +0.1
899,367 + -0.3
899,367 + -0.1
899,368 - +0.5
899,368 - -0.2
899,368 - +0.2
899,369 + +0.3
899,375 - +0.2
899,376 + +0.1
899,376 + +0.7
899,376 + -0.5
899,385 - -0.1
899,385 - +0.1
899,385 - -0.1
899,386 + -0.6
899,386 + +0.2
899,418 + +0.1
899,418 + -0.8
899,420 - +1.2
899,558 - MMP_RS04700 0.30 -0.0
899,559 + MMP_RS04700 0.30 +0.1
899,564 - MMP_RS04700 0.31 -0.3
899,565 + MMP_RS04700 0.31 +0.1
899,571 - MMP_RS04700 0.32 +0.3
899,576 - MMP_RS04700 0.33 -0.3
899,581 - MMP_RS04700 0.34 +0.2
899,582 + MMP_RS04700 0.34 +0.1
899,693 + MMP_RS04700 0.53 -0.5
899,778 - MMP_RS04700 0.68 +0.6
899,779 + MMP_RS04700 0.68 +0.8
899,799 + MMP_RS04700 0.72 -0.2
899,799 + MMP_RS04700 0.72 -0.1
899,804 - MMP_RS04700 0.73 -0.0
899,805 + MMP_RS04700 0.73 -0.0
899,820 + MMP_RS04700 0.75 +0.1
899,824 - MMP_RS04700 0.76 +0.0
899,825 + MMP_RS04700 0.76 +0.3
899,865 + MMP_RS04700 0.83 -2.6
899,865 + MMP_RS04700 0.83 -0.2
899,912 - +0.7
899,913 + +0.5
899,917 - +0.4
899,917 - -0.5
899,918 + +0.4
899,918 + -0.0
900,074 + -1.4
900,265 - -1.1
900,298 - -1.8
900,299 + -1.0
900,299 + -2.0
900,299 + -1.3
900,299 + -1.5
900,299 + -1.9
900,299 + -1.6
900,323 + -1.9
900,464 - -1.8
900,465 + -0.7
900,501 - -1.6
900,913 - -0.2
900,914 + -1.4
900,914 + -1.4
900,914 + -1.2
900,916 + -2.3
900,939 - -0.3
900,940 + -1.3

Or see this region's nucleotide sequence