Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3792

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3790 and Ga0059261_3791 are separated by 97 nucleotidesGa0059261_3791 and Ga0059261_3792 overlap by 4 nucleotidesGa0059261_3792 and Ga0059261_3793 are separated by 108 nucleotides Ga0059261_3790: Ga0059261_3790 - Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component, at 3,891,677 to 3,893,143 _3790 Ga0059261_3791: Ga0059261_3791 - hypothetical protein, at 3,893,241 to 3,893,564 _3791 Ga0059261_3792: Ga0059261_3792 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,893,561 to 3,894,349 _3792 Ga0059261_3793: Ga0059261_3793 - Acyl-CoA dehydrogenases, at 3,894,458 to 3,895,603 _3793 Position (kb) 3893 3894 3895Strain fitness (log2 ratio) -2 -1 0 1at 3893.322 kb on + strand, within Ga0059261_3791at 3893.322 kb on + strand, within Ga0059261_3791at 3893.322 kb on + strand, within Ga0059261_3791at 3893.323 kb on - strand, within Ga0059261_3791at 3893.323 kb on - strand, within Ga0059261_3791at 3893.323 kb on - strand, within Ga0059261_3791at 3893.323 kb on - strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.397 kb on + strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.398 kb on - strand, within Ga0059261_3791at 3893.410 kb on - strand, within Ga0059261_3791at 3893.451 kb on + strand, within Ga0059261_3791at 3893.452 kb on - strand, within Ga0059261_3791at 3893.452 kb on - strand, within Ga0059261_3791at 3893.454 kb on + strand, within Ga0059261_3791at 3893.455 kb on - strand, within Ga0059261_3791at 3893.455 kb on - strand, within Ga0059261_3791at 3893.455 kb on - strand, within Ga0059261_3791at 3893.455 kb on - strand, within Ga0059261_3791at 3893.517 kb on + strand, within Ga0059261_3791at 3893.517 kb on + strand, within Ga0059261_3791at 3893.545 kb on + strandat 3893.562 kb on + strandat 3893.563 kb on - strandat 3893.573 kb on - strandat 3893.634 kb on + strandat 3893.634 kb on + strandat 3893.634 kb on + strandat 3893.634 kb on + strandat 3893.635 kb on - strandat 3893.635 kb on - strandat 3893.635 kb on - strandat 3893.809 kb on + strand, within Ga0059261_3792at 3893.809 kb on + strand, within Ga0059261_3792at 3893.838 kb on + strand, within Ga0059261_3792at 3893.838 kb on + strand, within Ga0059261_3792at 3893.839 kb on - strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strandat 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.865 kb on + strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.866 kb on - strand, within Ga0059261_3792at 3893.869 kb on + strand, within Ga0059261_3792at 3893.869 kb on + strand, within Ga0059261_3792at 3893.869 kb on + strand, within Ga0059261_3792at 3893.869 kb on + strandat 3893.870 kb on - strand, within Ga0059261_3792at 3893.870 kb on - strand, within Ga0059261_3792at 3893.870 kb on - strand, within Ga0059261_3792at 3893.871 kb on + strand, within Ga0059261_3792at 3893.871 kb on + strand, within Ga0059261_3792at 3893.871 kb on + strand, within Ga0059261_3792at 3893.871 kb on + strand, within Ga0059261_3792at 3893.871 kb on + strand, within Ga0059261_3792at 3893.871 kb on + strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3893.872 kb on - strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.232 kb on + strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.233 kb on - strand, within Ga0059261_3792at 3894.234 kb on + strand, within Ga0059261_3792at 3894.234 kb on + strand, within Ga0059261_3792at 3894.234 kb on + strand, within Ga0059261_3792at 3894.234 kb on + strand, within Ga0059261_3792at 3894.234 kb on + strand, within Ga0059261_3792at 3894.234 kb on + strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.235 kb on - strand, within Ga0059261_3792at 3894.377 kb on + strandat 3894.377 kb on + strandat 3894.377 kb on + strandat 3894.378 kb on - strandat 3894.378 kb on - strandat 3894.459 kb on + strandat 3894.459 kb on + strandat 3894.460 kb on - strandat 3894.460 kb on - strandat 3894.522 kb on + strandat 3894.522 kb on + strandat 3894.522 kb on + strandat 3894.523 kb on - strandat 3894.523 kb on - strandat 3894.523 kb on - strandat 3894.523 kb on - strandat 3894.523 kb on - strandat 3894.549 kb on + strandat 3894.567 kb on + strandat 3894.568 kb on - strandat 3894.568 kb on - strandat 3894.577 kb on + strand, within Ga0059261_3793at 3894.578 kb on - strand, within Ga0059261_3793at 3894.579 kb on + strand, within Ga0059261_3793at 3894.579 kb on + strand, within Ga0059261_3793at 3894.579 kb on + strand, within Ga0059261_3793at 3894.580 kb on - strand, within Ga0059261_3793at 3894.580 kb on - strand, within Ga0059261_3793at 3894.580 kb on - strand, within Ga0059261_3793at 3894.816 kb on + strand, within Ga0059261_3793at 3894.816 kb on + strand, within Ga0059261_3793at 3894.816 kb on + strand, within Ga0059261_3793at 3894.817 kb on - strand, within Ga0059261_3793at 3894.817 kb on - strand, within Ga0059261_3793at 3894.871 kb on + strand, within Ga0059261_3793at 3894.871 kb on + strand, within Ga0059261_3793at 3894.871 kb on + strand, within Ga0059261_3793at 3895.049 kb on + strand, within Ga0059261_3793at 3895.135 kb on + strand, within Ga0059261_3793at 3895.136 kb on - strand, within Ga0059261_3793at 3895.136 kb on - strand, within Ga0059261_3793at 3895.164 kb on + strand, within Ga0059261_3793at 3895.165 kb on - strand, within Ga0059261_3793at 3895.165 kb on - strand, within Ga0059261_3793at 3895.165 kb on - strand, within Ga0059261_3793

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,893,322 + Ga0059261_3791 0.25 +0.1
3,893,322 + Ga0059261_3791 0.25 -0.6
3,893,322 + Ga0059261_3791 0.25 -1.3
3,893,323 - Ga0059261_3791 0.25 +0.8
3,893,323 - Ga0059261_3791 0.25 -0.3
3,893,323 - Ga0059261_3791 0.25 +0.1
3,893,323 - Ga0059261_3791 0.25 +0.5
3,893,397 + Ga0059261_3791 0.48 -0.0
3,893,397 + Ga0059261_3791 0.48 -0.1
3,893,397 + Ga0059261_3791 0.48 -0.2
3,893,397 + Ga0059261_3791 0.48 -0.7
3,893,397 + Ga0059261_3791 0.48 +0.2
3,893,397 + Ga0059261_3791 0.48 -0.1
3,893,397 + Ga0059261_3791 0.48 -1.2
3,893,397 + Ga0059261_3791 0.48 +0.4
3,893,398 - Ga0059261_3791 0.48 +0.2
3,893,398 - Ga0059261_3791 0.48 +0.3
3,893,398 - Ga0059261_3791 0.48 -1.0
3,893,398 - Ga0059261_3791 0.48 +0.4
3,893,398 - Ga0059261_3791 0.48 -0.0
3,893,398 - Ga0059261_3791 0.48 -0.4
3,893,398 - Ga0059261_3791 0.48 -0.1
3,893,398 - Ga0059261_3791 0.48 -0.4
3,893,398 - Ga0059261_3791 0.48 +0.7
3,893,410 - Ga0059261_3791 0.52 +0.7
3,893,451 + Ga0059261_3791 0.65 +0.1
3,893,452 - Ga0059261_3791 0.65 +0.7
3,893,452 - Ga0059261_3791 0.65 -1.1
3,893,454 + Ga0059261_3791 0.66 +0.3
3,893,455 - Ga0059261_3791 0.66 -0.3
3,893,455 - Ga0059261_3791 0.66 -1.2
3,893,455 - Ga0059261_3791 0.66 -0.6
3,893,455 - Ga0059261_3791 0.66 -0.3
3,893,517 + Ga0059261_3791 0.85 +0.2
3,893,517 + Ga0059261_3791 0.85 -0.6
3,893,545 + +0.3
3,893,562 + +0.4
3,893,563 - +1.5
3,893,573 - -0.1
3,893,634 + -0.6
3,893,634 + +1.4
3,893,634 + -0.5
3,893,634 + +0.1
3,893,635 - -2.5
3,893,635 - +0.2
3,893,635 - -0.1
3,893,809 + Ga0059261_3792 0.31 -0.4
3,893,809 + Ga0059261_3792 0.31 -0.1
3,893,838 + Ga0059261_3792 0.35 -0.6
3,893,838 + Ga0059261_3792 0.35 -0.9
3,893,839 - Ga0059261_3792 0.35 -1.1
3,893,865 + Ga0059261_3792 0.39 +0.1
3,893,865 + Ga0059261_3792 0.39 -0.1
3,893,865 + Ga0059261_3792 0.39 -0.4
3,893,865 + Ga0059261_3792 0.39 -0.7
3,893,865 + Ga0059261_3792 0.39 +0.3
3,893,865 + +0.9
3,893,865 + Ga0059261_3792 0.39 +0.7
3,893,865 + Ga0059261_3792 0.39 +0.7
3,893,865 + Ga0059261_3792 0.39 -0.0
3,893,866 - Ga0059261_3792 0.39 -0.6
3,893,866 - Ga0059261_3792 0.39 -0.4
3,893,866 - Ga0059261_3792 0.39 -1.0
3,893,866 - Ga0059261_3792 0.39 -0.4
3,893,866 - Ga0059261_3792 0.39 +0.6
3,893,866 - Ga0059261_3792 0.39 +0.3
3,893,866 - Ga0059261_3792 0.39 +0.3
3,893,866 - Ga0059261_3792 0.39 -2.0
3,893,869 + Ga0059261_3792 0.39 +0.6
3,893,869 + Ga0059261_3792 0.39 +0.8
3,893,869 + Ga0059261_3792 0.39 -0.2
3,893,869 + +0.7
3,893,870 - Ga0059261_3792 0.39 -0.1
3,893,870 - Ga0059261_3792 0.39 +1.4
3,893,870 - Ga0059261_3792 0.39 -0.2
3,893,871 + Ga0059261_3792 0.39 +0.9
3,893,871 + Ga0059261_3792 0.39 -0.7
3,893,871 + Ga0059261_3792 0.39 +0.3
3,893,871 + Ga0059261_3792 0.39 +0.7
3,893,871 + Ga0059261_3792 0.39 +0.1
3,893,871 + Ga0059261_3792 0.39 -0.2
3,893,872 - Ga0059261_3792 0.39 +1.3
3,893,872 - Ga0059261_3792 0.39 -0.2
3,893,872 - Ga0059261_3792 0.39 +0.4
3,893,872 - Ga0059261_3792 0.39 +0.8
3,893,872 - Ga0059261_3792 0.39 +0.6
3,893,872 - Ga0059261_3792 0.39 -0.1
3,893,872 - Ga0059261_3792 0.39 -0.6
3,893,872 - Ga0059261_3792 0.39 +0.4
3,893,872 - Ga0059261_3792 0.39 -0.8
3,894,232 + Ga0059261_3792 0.85 +1.1
3,894,232 + Ga0059261_3792 0.85 +0.2
3,894,232 + Ga0059261_3792 0.85 +1.3
3,894,232 + Ga0059261_3792 0.85 +0.2
3,894,232 + Ga0059261_3792 0.85 -0.1
3,894,232 + Ga0059261_3792 0.85 -0.5
3,894,232 + Ga0059261_3792 0.85 +0.1
3,894,232 + Ga0059261_3792 0.85 -1.1
3,894,233 - Ga0059261_3792 0.85 +1.0
3,894,233 - Ga0059261_3792 0.85 +0.1
3,894,233 - Ga0059261_3792 0.85 -1.0
3,894,233 - Ga0059261_3792 0.85 +0.7
3,894,233 - Ga0059261_3792 0.85 -0.2
3,894,233 - Ga0059261_3792 0.85 +1.7
3,894,233 - Ga0059261_3792 0.85 -0.4
3,894,233 - Ga0059261_3792 0.85 +0.4
3,894,234 + Ga0059261_3792 0.85 +0.6
3,894,234 + Ga0059261_3792 0.85 -0.1
3,894,234 + Ga0059261_3792 0.85 -0.8
3,894,234 + Ga0059261_3792 0.85 -0.5
3,894,234 + Ga0059261_3792 0.85 +0.7
3,894,234 + Ga0059261_3792 0.85 -1.2
3,894,235 - Ga0059261_3792 0.85 -2.0
3,894,235 - Ga0059261_3792 0.85 -0.5
3,894,235 - Ga0059261_3792 0.85 -0.1
3,894,235 - Ga0059261_3792 0.85 -0.2
3,894,235 - Ga0059261_3792 0.85 -1.5
3,894,235 - Ga0059261_3792 0.85 +0.4
3,894,235 - Ga0059261_3792 0.85 +0.1
3,894,235 - Ga0059261_3792 0.85 +0.1
3,894,235 - Ga0059261_3792 0.85 +0.9
3,894,235 - Ga0059261_3792 0.85 -0.5
3,894,235 - Ga0059261_3792 0.85 +0.2
3,894,235 - Ga0059261_3792 0.85 +0.8
3,894,377 + -0.2
3,894,377 + -0.1
3,894,377 + -0.7
3,894,378 - -0.2
3,894,378 - +0.5
3,894,459 + -0.2
3,894,459 + -0.3
3,894,460 - +0.1
3,894,460 - -0.5
3,894,522 + +0.2
3,894,522 + -0.3
3,894,522 + +0.4
3,894,523 - +0.5
3,894,523 - +0.4
3,894,523 - +0.0
3,894,523 - -0.5
3,894,523 - -0.6
3,894,549 + +0.6
3,894,567 + -0.4
3,894,568 - +0.3
3,894,568 - +0.1
3,894,577 + Ga0059261_3793 0.10 -0.2
3,894,578 - Ga0059261_3793 0.10 +1.1
3,894,579 + Ga0059261_3793 0.11 +0.1
3,894,579 + Ga0059261_3793 0.11 -0.7
3,894,579 + Ga0059261_3793 0.11 -1.2
3,894,580 - Ga0059261_3793 0.11 -0.2
3,894,580 - Ga0059261_3793 0.11 -0.2
3,894,580 - Ga0059261_3793 0.11 +0.8
3,894,816 + Ga0059261_3793 0.31 +1.4
3,894,816 + Ga0059261_3793 0.31 +0.3
3,894,816 + Ga0059261_3793 0.31 -0.3
3,894,817 - Ga0059261_3793 0.31 -0.2
3,894,817 - Ga0059261_3793 0.31 +0.0
3,894,871 + Ga0059261_3793 0.36 +1.0
3,894,871 + Ga0059261_3793 0.36 -0.7
3,894,871 + Ga0059261_3793 0.36 +0.3
3,895,049 + Ga0059261_3793 0.52 +0.1
3,895,135 + Ga0059261_3793 0.59 -0.0
3,895,136 - Ga0059261_3793 0.59 -0.2
3,895,136 - Ga0059261_3793 0.59 +0.9
3,895,164 + Ga0059261_3793 0.62 -0.0
3,895,165 - Ga0059261_3793 0.62 -1.9
3,895,165 - Ga0059261_3793 0.62 +0.6
3,895,165 - Ga0059261_3793 0.62 +0.7

Or see this region's nucleotide sequence