Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3194 and Ga0059261_3195 overlap by 4 nucleotides Ga0059261_3195 and Ga0059261_3196 overlap by 4 nucleotides Ga0059261_3196 and Ga0059261_3197 are separated by 17 nucleotides Ga0059261_3197 and Ga0059261_3198 are separated by 3 nucleotides
Ga0059261_3194: Ga0059261_3194 - O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) , at 3,328,739 to 3,329,947
_3194
Ga0059261_3195: Ga0059261_3195 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 3,329,944 to 3,330,342
_3195
Ga0059261_3196: Ga0059261_3196 - Transcriptional regulator, at 3,330,339 to 3,331,133
_3196
Ga0059261_3197: Ga0059261_3197 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,331,151 to 3,331,672
_3197
Ga0059261_3198: Ga0059261_3198 - Beta-lactamase class A, at 3,331,676 to 3,332,962
_3198
Position (kb)
3330
3331
3332 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3329.451 kb on - strand, within Ga0059261_3194 at 3329.517 kb on + strand at 3329.518 kb on - strand, within Ga0059261_3194 at 3329.518 kb on - strand, within Ga0059261_3194 at 3329.518 kb on - strand, within Ga0059261_3194 at 3329.713 kb on + strand, within Ga0059261_3194 at 3329.714 kb on - strand, within Ga0059261_3194 at 3329.750 kb on - strand, within Ga0059261_3194 at 3329.750 kb on - strand, within Ga0059261_3194 at 3329.768 kb on - strand, within Ga0059261_3194 at 3329.768 kb on - strand, within Ga0059261_3194 at 3330.007 kb on + strand, within Ga0059261_3195 at 3330.007 kb on + strand, within Ga0059261_3195 at 3330.008 kb on - strand, within Ga0059261_3195 at 3330.008 kb on - strand, within Ga0059261_3195 at 3330.008 kb on - strand, within Ga0059261_3195 at 3330.008 kb on - strand, within Ga0059261_3195 at 3330.055 kb on + strand, within Ga0059261_3195 at 3330.055 kb on + strand, within Ga0059261_3195 at 3330.055 kb on + strand, within Ga0059261_3195 at 3330.056 kb on - strand, within Ga0059261_3195 at 3330.202 kb on + strand, within Ga0059261_3195 at 3330.203 kb on - strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.208 kb on + strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.209 kb on - strand, within Ga0059261_3195 at 3330.259 kb on + strand, within Ga0059261_3195 at 3330.259 kb on + strand, within Ga0059261_3195 at 3330.260 kb on - strand, within Ga0059261_3195 at 3330.260 kb on - strand, within Ga0059261_3195 at 3330.317 kb on + strand at 3330.318 kb on - strand at 3330.863 kb on + strand, within Ga0059261_3196 at 3330.864 kb on - strand, within Ga0059261_3196 at 3330.864 kb on - strand, within Ga0059261_3196 at 3330.864 kb on - strand, within Ga0059261_3196 at 3331.250 kb on + strand, within Ga0059261_3197 at 3331.251 kb on - strand, within Ga0059261_3197 at 3331.415 kb on + strand, within Ga0059261_3197 at 3331.415 kb on + strand, within Ga0059261_3197 at 3331.415 kb on + strand, within Ga0059261_3197 at 3331.415 kb on + strand, within Ga0059261_3197 at 3331.415 kb on + strand, within Ga0059261_3197 at 3331.415 kb on + strand, within Ga0059261_3197 at 3331.416 kb on - strand, within Ga0059261_3197 at 3331.416 kb on - strand, within Ga0059261_3197 at 3331.416 kb on - strand, within Ga0059261_3197 at 3331.416 kb on - strand, within Ga0059261_3197 at 3331.416 kb on - strand, within Ga0059261_3197 at 3331.448 kb on - strand, within Ga0059261_3197 at 3331.634 kb on + strand at 3331.634 kb on + strand at 3331.634 kb on + strand at 3331.634 kb on + strand at 3331.634 kb on + strand at 3331.634 kb on + strand at 3331.634 kb on + strand at 3331.635 kb on - strand at 3331.635 kb on - strand at 3331.635 kb on - strand at 3331.635 kb on - strand at 3331.635 kb on - strand at 3331.635 kb on - strand at 3331.635 kb on - strand at 3331.677 kb on + strand at 3331.677 kb on + strand at 3331.677 kb on + strand at 3331.677 kb on + strand at 3331.677 kb on + strand at 3331.677 kb on + strand at 3331.678 kb on - strand at 3331.678 kb on - strand at 3331.678 kb on - strand at 3331.696 kb on + strand at 3331.696 kb on + strand at 3331.696 kb on + strand at 3331.696 kb on + strand at 3331.696 kb on + strand at 3331.696 kb on + strand at 3331.697 kb on - strand at 3331.697 kb on - strand at 3331.776 kb on + strand at 3331.776 kb on + strand at 3331.776 kb on + strand at 3331.777 kb on - strand at 3331.777 kb on - strand at 3331.777 kb on - strand at 3331.777 kb on - strand at 3331.815 kb on + strand, within Ga0059261_3198 at 3331.815 kb on + strand, within Ga0059261_3198 at 3331.815 kb on + strand, within Ga0059261_3198 at 3331.816 kb on - strand, within Ga0059261_3198 at 3331.816 kb on - strand, within Ga0059261_3198 at 3331.852 kb on + strand, within Ga0059261_3198 at 3331.852 kb on + strand, within Ga0059261_3198 at 3331.852 kb on + strand, within Ga0059261_3198 at 3331.852 kb on + strand, within Ga0059261_3198 at 3331.852 kb on + strand, within Ga0059261_3198 at 3331.853 kb on - strand, within Ga0059261_3198 at 3331.853 kb on - strand, within Ga0059261_3198 at 3331.853 kb on - strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.854 kb on + strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.855 kb on - strand, within Ga0059261_3198 at 3331.943 kb on + strand, within Ga0059261_3198 at 3331.943 kb on + strand, within Ga0059261_3198
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,329,451 - Ga0059261_3194 0.59 -3.1 3,329,517 + +0.2 3,329,518 - Ga0059261_3194 0.64 -3.1 3,329,518 - Ga0059261_3194 0.64 -0.6 3,329,518 - Ga0059261_3194 0.64 -3.5 3,329,713 + Ga0059261_3194 0.81 -3.7 3,329,714 - Ga0059261_3194 0.81 -3.4 3,329,750 - Ga0059261_3194 0.84 -1.6 3,329,750 - Ga0059261_3194 0.84 -4.7 3,329,768 - Ga0059261_3194 0.85 -1.6 3,329,768 - Ga0059261_3194 0.85 -3.0 3,330,007 + Ga0059261_3195 0.16 -1.8 3,330,007 + Ga0059261_3195 0.16 -0.9 3,330,008 - Ga0059261_3195 0.16 -2.0 3,330,008 - Ga0059261_3195 0.16 -4.0 3,330,008 - Ga0059261_3195 0.16 -3.3 3,330,008 - Ga0059261_3195 0.16 -3.6 3,330,055 + Ga0059261_3195 0.28 +0.4 3,330,055 + Ga0059261_3195 0.28 -1.0 3,330,055 + Ga0059261_3195 0.28 -0.2 3,330,056 - Ga0059261_3195 0.28 -5.1 3,330,202 + Ga0059261_3195 0.65 -1.6 3,330,203 - Ga0059261_3195 0.65 -1.2 3,330,208 + Ga0059261_3195 0.66 -1.8 3,330,208 + +1.8 3,330,208 + Ga0059261_3195 0.66 +0.2 3,330,208 + Ga0059261_3195 0.66 -0.2 3,330,208 + Ga0059261_3195 0.66 -0.5 3,330,208 + Ga0059261_3195 0.66 -0.1 3,330,208 + Ga0059261_3195 0.66 -0.4 3,330,208 + Ga0059261_3195 0.66 +0.2 3,330,208 + Ga0059261_3195 0.66 -0.3 3,330,209 - Ga0059261_3195 0.66 +0.2 3,330,209 - Ga0059261_3195 0.66 -3.5 3,330,209 - Ga0059261_3195 0.66 -3.5 3,330,209 - Ga0059261_3195 0.66 -2.6 3,330,209 - Ga0059261_3195 0.66 -1.7 3,330,209 - Ga0059261_3195 0.66 -3.8 3,330,209 - Ga0059261_3195 0.66 -4.6 3,330,209 - Ga0059261_3195 0.66 -2.8 3,330,209 - Ga0059261_3195 0.66 -1.2 3,330,209 - Ga0059261_3195 0.66 -2.8 3,330,209 - Ga0059261_3195 0.66 -3.7 3,330,209 - Ga0059261_3195 0.66 -3.6 3,330,209 - Ga0059261_3195 0.66 -3.1 3,330,259 + Ga0059261_3195 0.79 -0.8 3,330,259 + Ga0059261_3195 0.79 +0.4 3,330,260 - Ga0059261_3195 0.79 -1.3 3,330,260 - Ga0059261_3195 0.79 -2.1 3,330,317 + +0.1 3,330,318 - -2.7 3,330,863 + Ga0059261_3196 0.66 -2.6 3,330,864 - Ga0059261_3196 0.66 -1.7 3,330,864 - Ga0059261_3196 0.66 -2.1 3,330,864 - Ga0059261_3196 0.66 -2.5 3,331,250 + Ga0059261_3197 0.19 +0.2 3,331,251 - Ga0059261_3197 0.19 +0.5 3,331,415 + Ga0059261_3197 0.51 +0.1 3,331,415 + Ga0059261_3197 0.51 -0.1 3,331,415 + Ga0059261_3197 0.51 -0.0 3,331,415 + Ga0059261_3197 0.51 -0.2 3,331,415 + Ga0059261_3197 0.51 +0.1 3,331,415 + Ga0059261_3197 0.51 -0.0 3,331,416 - Ga0059261_3197 0.51 -1.3 3,331,416 - Ga0059261_3197 0.51 -0.5 3,331,416 - Ga0059261_3197 0.51 +0.2 3,331,416 - Ga0059261_3197 0.51 +0.2 3,331,416 - Ga0059261_3197 0.51 -0.3 3,331,448 - Ga0059261_3197 0.57 -0.4 3,331,634 + +0.6 3,331,634 + -0.1 3,331,634 + -0.4 3,331,634 + -0.1 3,331,634 + +0.3 3,331,634 + +0.8 3,331,634 + -0.1 3,331,635 - +0.2 3,331,635 - -1.9 3,331,635 - -0.3 3,331,635 - -0.6 3,331,635 - +0.2 3,331,635 - -0.3 3,331,635 - -1.2 3,331,677 + -0.3 3,331,677 + -0.9 3,331,677 + -0.8 3,331,677 + -0.3 3,331,677 + +0.3 3,331,677 + -0.2 3,331,678 - -2.1 3,331,678 - +0.7 3,331,678 - -0.3 3,331,696 + +0.8 3,331,696 + -0.1 3,331,696 + +0.8 3,331,696 + -0.4 3,331,696 + +0.1 3,331,696 + -0.1 3,331,697 - -0.0 3,331,697 - -0.3 3,331,776 + +0.3 3,331,776 + +0.6 3,331,776 + +0.4 3,331,777 - -1.2 3,331,777 - +0.4 3,331,777 - -0.4 3,331,777 - -0.2 3,331,815 + Ga0059261_3198 0.11 -0.4 3,331,815 + Ga0059261_3198 0.11 +0.8 3,331,815 + Ga0059261_3198 0.11 +0.1 3,331,816 - Ga0059261_3198 0.11 -0.1 3,331,816 - Ga0059261_3198 0.11 +1.0 3,331,852 + Ga0059261_3198 0.14 -0.1 3,331,852 + Ga0059261_3198 0.14 +0.2 3,331,852 + Ga0059261_3198 0.14 +0.1 3,331,852 + Ga0059261_3198 0.14 +0.3 3,331,852 + Ga0059261_3198 0.14 +0.2 3,331,853 - Ga0059261_3198 0.14 -0.6 3,331,853 - Ga0059261_3198 0.14 +0.9 3,331,853 - Ga0059261_3198 0.14 +0.6 3,331,854 + Ga0059261_3198 0.14 -0.9 3,331,854 + Ga0059261_3198 0.14 +0.0 3,331,854 + Ga0059261_3198 0.14 -0.5 3,331,854 + Ga0059261_3198 0.14 +0.3 3,331,854 + Ga0059261_3198 0.14 -1.1 3,331,854 + Ga0059261_3198 0.14 -1.0 3,331,854 + Ga0059261_3198 0.14 -0.3 3,331,855 - Ga0059261_3198 0.14 +0.4 3,331,855 - Ga0059261_3198 0.14 +0.4 3,331,855 - Ga0059261_3198 0.14 +0.5 3,331,855 - Ga0059261_3198 0.14 -1.3 3,331,855 - Ga0059261_3198 0.14 +0.6 3,331,855 - Ga0059261_3198 0.14 +1.3 3,331,855 - Ga0059261_3198 0.14 +0.0 3,331,855 - Ga0059261_3198 0.14 +0.0 3,331,855 - Ga0059261_3198 0.14 -0.3 3,331,855 - Ga0059261_3198 0.14 -1.0 3,331,943 + Ga0059261_3198 0.21 -0.8 3,331,943 + Ga0059261_3198 0.21 +0.2
Or see this region's nucleotide sequence