Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3196

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3194 and Ga0059261_3195 overlap by 4 nucleotidesGa0059261_3195 and Ga0059261_3196 overlap by 4 nucleotidesGa0059261_3196 and Ga0059261_3197 are separated by 17 nucleotidesGa0059261_3197 and Ga0059261_3198 are separated by 3 nucleotides Ga0059261_3194: Ga0059261_3194 - O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data), at 3,328,739 to 3,329,947 _3194 Ga0059261_3195: Ga0059261_3195 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 3,329,944 to 3,330,342 _3195 Ga0059261_3196: Ga0059261_3196 - Transcriptional regulator, at 3,330,339 to 3,331,133 _3196 Ga0059261_3197: Ga0059261_3197 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,331,151 to 3,331,672 _3197 Ga0059261_3198: Ga0059261_3198 - Beta-lactamase class A, at 3,331,676 to 3,332,962 _3198 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3329.451 kb on - strand, within Ga0059261_3194at 3329.517 kb on + strandat 3329.518 kb on - strand, within Ga0059261_3194at 3329.518 kb on - strand, within Ga0059261_3194at 3329.518 kb on - strand, within Ga0059261_3194at 3329.713 kb on + strand, within Ga0059261_3194at 3329.714 kb on - strand, within Ga0059261_3194at 3329.750 kb on - strand, within Ga0059261_3194at 3329.750 kb on - strand, within Ga0059261_3194at 3329.768 kb on - strand, within Ga0059261_3194at 3329.768 kb on - strand, within Ga0059261_3194at 3330.007 kb on + strand, within Ga0059261_3195at 3330.007 kb on + strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.055 kb on + strand, within Ga0059261_3195at 3330.055 kb on + strand, within Ga0059261_3195at 3330.055 kb on + strand, within Ga0059261_3195at 3330.056 kb on - strand, within Ga0059261_3195at 3330.202 kb on + strand, within Ga0059261_3195at 3330.203 kb on - strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strandat 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.259 kb on + strand, within Ga0059261_3195at 3330.259 kb on + strand, within Ga0059261_3195at 3330.260 kb on - strand, within Ga0059261_3195at 3330.260 kb on - strand, within Ga0059261_3195at 3330.317 kb on + strandat 3330.318 kb on - strandat 3330.863 kb on + strand, within Ga0059261_3196at 3330.864 kb on - strand, within Ga0059261_3196at 3330.864 kb on - strand, within Ga0059261_3196at 3330.864 kb on - strand, within Ga0059261_3196at 3331.250 kb on + strand, within Ga0059261_3197at 3331.251 kb on - strand, within Ga0059261_3197at 3331.415 kb on + strand, within Ga0059261_3197at 3331.415 kb on + strand, within Ga0059261_3197at 3331.415 kb on + strand, within Ga0059261_3197at 3331.415 kb on + strand, within Ga0059261_3197at 3331.415 kb on + strand, within Ga0059261_3197at 3331.415 kb on + strand, within Ga0059261_3197at 3331.416 kb on - strand, within Ga0059261_3197at 3331.416 kb on - strand, within Ga0059261_3197at 3331.416 kb on - strand, within Ga0059261_3197at 3331.416 kb on - strand, within Ga0059261_3197at 3331.416 kb on - strand, within Ga0059261_3197at 3331.448 kb on - strand, within Ga0059261_3197at 3331.634 kb on + strandat 3331.634 kb on + strandat 3331.634 kb on + strandat 3331.634 kb on + strandat 3331.634 kb on + strandat 3331.634 kb on + strandat 3331.634 kb on + strandat 3331.635 kb on - strandat 3331.635 kb on - strandat 3331.635 kb on - strandat 3331.635 kb on - strandat 3331.635 kb on - strandat 3331.635 kb on - strandat 3331.635 kb on - strandat 3331.677 kb on + strandat 3331.677 kb on + strandat 3331.677 kb on + strandat 3331.677 kb on + strandat 3331.677 kb on + strandat 3331.677 kb on + strandat 3331.678 kb on - strandat 3331.678 kb on - strandat 3331.678 kb on - strandat 3331.696 kb on + strandat 3331.696 kb on + strandat 3331.696 kb on + strandat 3331.696 kb on + strandat 3331.696 kb on + strandat 3331.696 kb on + strandat 3331.697 kb on - strandat 3331.697 kb on - strandat 3331.776 kb on + strandat 3331.776 kb on + strandat 3331.776 kb on + strandat 3331.777 kb on - strandat 3331.777 kb on - strandat 3331.777 kb on - strandat 3331.777 kb on - strandat 3331.815 kb on + strand, within Ga0059261_3198at 3331.815 kb on + strand, within Ga0059261_3198at 3331.815 kb on + strand, within Ga0059261_3198at 3331.816 kb on - strand, within Ga0059261_3198at 3331.816 kb on - strand, within Ga0059261_3198at 3331.852 kb on + strand, within Ga0059261_3198at 3331.852 kb on + strand, within Ga0059261_3198at 3331.852 kb on + strand, within Ga0059261_3198at 3331.852 kb on + strand, within Ga0059261_3198at 3331.852 kb on + strand, within Ga0059261_3198at 3331.853 kb on - strand, within Ga0059261_3198at 3331.853 kb on - strand, within Ga0059261_3198at 3331.853 kb on - strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.854 kb on + strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.855 kb on - strand, within Ga0059261_3198at 3331.943 kb on + strand, within Ga0059261_3198at 3331.943 kb on + strand, within Ga0059261_3198

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,329,451 - Ga0059261_3194 0.59 -3.1
3,329,517 + +0.2
3,329,518 - Ga0059261_3194 0.64 -3.1
3,329,518 - Ga0059261_3194 0.64 -0.6
3,329,518 - Ga0059261_3194 0.64 -3.5
3,329,713 + Ga0059261_3194 0.81 -3.7
3,329,714 - Ga0059261_3194 0.81 -3.4
3,329,750 - Ga0059261_3194 0.84 -1.6
3,329,750 - Ga0059261_3194 0.84 -4.7
3,329,768 - Ga0059261_3194 0.85 -1.6
3,329,768 - Ga0059261_3194 0.85 -3.0
3,330,007 + Ga0059261_3195 0.16 -1.8
3,330,007 + Ga0059261_3195 0.16 -0.9
3,330,008 - Ga0059261_3195 0.16 -2.0
3,330,008 - Ga0059261_3195 0.16 -4.0
3,330,008 - Ga0059261_3195 0.16 -3.3
3,330,008 - Ga0059261_3195 0.16 -3.6
3,330,055 + Ga0059261_3195 0.28 +0.4
3,330,055 + Ga0059261_3195 0.28 -1.0
3,330,055 + Ga0059261_3195 0.28 -0.2
3,330,056 - Ga0059261_3195 0.28 -5.1
3,330,202 + Ga0059261_3195 0.65 -1.6
3,330,203 - Ga0059261_3195 0.65 -1.2
3,330,208 + Ga0059261_3195 0.66 -1.8
3,330,208 + +1.8
3,330,208 + Ga0059261_3195 0.66 +0.2
3,330,208 + Ga0059261_3195 0.66 -0.2
3,330,208 + Ga0059261_3195 0.66 -0.5
3,330,208 + Ga0059261_3195 0.66 -0.1
3,330,208 + Ga0059261_3195 0.66 -0.4
3,330,208 + Ga0059261_3195 0.66 +0.2
3,330,208 + Ga0059261_3195 0.66 -0.3
3,330,209 - Ga0059261_3195 0.66 +0.2
3,330,209 - Ga0059261_3195 0.66 -3.5
3,330,209 - Ga0059261_3195 0.66 -3.5
3,330,209 - Ga0059261_3195 0.66 -2.6
3,330,209 - Ga0059261_3195 0.66 -1.7
3,330,209 - Ga0059261_3195 0.66 -3.8
3,330,209 - Ga0059261_3195 0.66 -4.6
3,330,209 - Ga0059261_3195 0.66 -2.8
3,330,209 - Ga0059261_3195 0.66 -1.2
3,330,209 - Ga0059261_3195 0.66 -2.8
3,330,209 - Ga0059261_3195 0.66 -3.7
3,330,209 - Ga0059261_3195 0.66 -3.6
3,330,209 - Ga0059261_3195 0.66 -3.1
3,330,259 + Ga0059261_3195 0.79 -0.8
3,330,259 + Ga0059261_3195 0.79 +0.4
3,330,260 - Ga0059261_3195 0.79 -1.3
3,330,260 - Ga0059261_3195 0.79 -2.1
3,330,317 + +0.1
3,330,318 - -2.7
3,330,863 + Ga0059261_3196 0.66 -2.6
3,330,864 - Ga0059261_3196 0.66 -1.7
3,330,864 - Ga0059261_3196 0.66 -2.1
3,330,864 - Ga0059261_3196 0.66 -2.5
3,331,250 + Ga0059261_3197 0.19 +0.2
3,331,251 - Ga0059261_3197 0.19 +0.5
3,331,415 + Ga0059261_3197 0.51 +0.1
3,331,415 + Ga0059261_3197 0.51 -0.1
3,331,415 + Ga0059261_3197 0.51 -0.0
3,331,415 + Ga0059261_3197 0.51 -0.2
3,331,415 + Ga0059261_3197 0.51 +0.1
3,331,415 + Ga0059261_3197 0.51 -0.0
3,331,416 - Ga0059261_3197 0.51 -1.3
3,331,416 - Ga0059261_3197 0.51 -0.5
3,331,416 - Ga0059261_3197 0.51 +0.2
3,331,416 - Ga0059261_3197 0.51 +0.2
3,331,416 - Ga0059261_3197 0.51 -0.3
3,331,448 - Ga0059261_3197 0.57 -0.4
3,331,634 + +0.6
3,331,634 + -0.1
3,331,634 + -0.4
3,331,634 + -0.1
3,331,634 + +0.3
3,331,634 + +0.8
3,331,634 + -0.1
3,331,635 - +0.2
3,331,635 - -1.9
3,331,635 - -0.3
3,331,635 - -0.6
3,331,635 - +0.2
3,331,635 - -0.3
3,331,635 - -1.2
3,331,677 + -0.3
3,331,677 + -0.9
3,331,677 + -0.8
3,331,677 + -0.3
3,331,677 + +0.3
3,331,677 + -0.2
3,331,678 - -2.1
3,331,678 - +0.7
3,331,678 - -0.3
3,331,696 + +0.8
3,331,696 + -0.1
3,331,696 + +0.8
3,331,696 + -0.4
3,331,696 + +0.1
3,331,696 + -0.1
3,331,697 - -0.0
3,331,697 - -0.3
3,331,776 + +0.3
3,331,776 + +0.6
3,331,776 + +0.4
3,331,777 - -1.2
3,331,777 - +0.4
3,331,777 - -0.4
3,331,777 - -0.2
3,331,815 + Ga0059261_3198 0.11 -0.4
3,331,815 + Ga0059261_3198 0.11 +0.8
3,331,815 + Ga0059261_3198 0.11 +0.1
3,331,816 - Ga0059261_3198 0.11 -0.1
3,331,816 - Ga0059261_3198 0.11 +1.0
3,331,852 + Ga0059261_3198 0.14 -0.1
3,331,852 + Ga0059261_3198 0.14 +0.2
3,331,852 + Ga0059261_3198 0.14 +0.1
3,331,852 + Ga0059261_3198 0.14 +0.3
3,331,852 + Ga0059261_3198 0.14 +0.2
3,331,853 - Ga0059261_3198 0.14 -0.6
3,331,853 - Ga0059261_3198 0.14 +0.9
3,331,853 - Ga0059261_3198 0.14 +0.6
3,331,854 + Ga0059261_3198 0.14 -0.9
3,331,854 + Ga0059261_3198 0.14 +0.0
3,331,854 + Ga0059261_3198 0.14 -0.5
3,331,854 + Ga0059261_3198 0.14 +0.3
3,331,854 + Ga0059261_3198 0.14 -1.1
3,331,854 + Ga0059261_3198 0.14 -1.0
3,331,854 + Ga0059261_3198 0.14 -0.3
3,331,855 - Ga0059261_3198 0.14 +0.4
3,331,855 - Ga0059261_3198 0.14 +0.4
3,331,855 - Ga0059261_3198 0.14 +0.5
3,331,855 - Ga0059261_3198 0.14 -1.3
3,331,855 - Ga0059261_3198 0.14 +0.6
3,331,855 - Ga0059261_3198 0.14 +1.3
3,331,855 - Ga0059261_3198 0.14 +0.0
3,331,855 - Ga0059261_3198 0.14 +0.0
3,331,855 - Ga0059261_3198 0.14 -0.3
3,331,855 - Ga0059261_3198 0.14 -1.0
3,331,943 + Ga0059261_3198 0.21 -0.8
3,331,943 + Ga0059261_3198 0.21 +0.2

Or see this region's nucleotide sequence