Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2323 and Ga0059261_2324 are separated by 98 nucleotides Ga0059261_2324 and Ga0059261_2325 are separated by 1 nucleotides Ga0059261_2325 and Ga0059261_2326 are separated by 3 nucleotides Ga0059261_2326 and Ga0059261_2327 overlap by 1 nucleotides
Ga0059261_2323: Ga0059261_2323 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 2,434,304 to 2,435,284
_2323
Ga0059261_2324: Ga0059261_2324 - integration host factor, alpha subunit, at 2,435,383 to 2,435,682
_2324
Ga0059261_2325: Ga0059261_2325 - MerR HTH family regulatory protein, at 2,435,684 to 2,436,034
_2325
Ga0059261_2326: Ga0059261_2326 - Phosphohistidine phosphatase SixA, at 2,436,038 to 2,436,580
_2326
Ga0059261_2327: Ga0059261_2327 - Rad3-related DNA helicases, at 2,436,580 to 2,439,297
_2327
Position (kb)
2436
2437 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2435.314 kb on + strand at 2435.320 kb on - strand at 2435.320 kb on - strand at 2435.350 kb on + strand at 2435.350 kb on + strand at 2435.350 kb on + strand at 2435.351 kb on - strand at 2435.351 kb on - strand at 2435.351 kb on - strand at 2435.351 kb on - strand at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.493 kb on + strand, within Ga0059261_2324 at 2435.494 kb on - strand, within Ga0059261_2324 at 2435.494 kb on - strand, within Ga0059261_2324 at 2435.494 kb on - strand, within Ga0059261_2324 at 2435.494 kb on - strand, within Ga0059261_2324 at 2435.790 kb on - strand, within Ga0059261_2325 at 2435.790 kb on - strand, within Ga0059261_2325 at 2435.846 kb on + strand, within Ga0059261_2325 at 2435.846 kb on + strand, within Ga0059261_2325 at 2435.847 kb on - strand, within Ga0059261_2325 at 2435.847 kb on - strand, within Ga0059261_2325 at 2435.847 kb on - strand, within Ga0059261_2325 at 2435.850 kb on - strand, within Ga0059261_2325 at 2435.875 kb on - strand, within Ga0059261_2325 at 2435.909 kb on + strand, within Ga0059261_2325 at 2435.909 kb on + strand, within Ga0059261_2325 at 2435.909 kb on + strand, within Ga0059261_2325 at 2435.910 kb on - strand, within Ga0059261_2325 at 2435.910 kb on - strand, within Ga0059261_2325 at 2436.194 kb on + strand, within Ga0059261_2326 at 2436.240 kb on - strand at 2436.254 kb on - strand, within Ga0059261_2326 at 2436.304 kb on + strand, within Ga0059261_2326 at 2436.333 kb on + strand, within Ga0059261_2326 at 2436.334 kb on - strand, within Ga0059261_2326 at 2436.334 kb on - strand, within Ga0059261_2326 at 2436.334 kb on - strand, within Ga0059261_2326 at 2436.334 kb on - strand, within Ga0059261_2326 at 2436.373 kb on - strand, within Ga0059261_2326 at 2436.411 kb on - strand, within Ga0059261_2326 at 2436.462 kb on + strand, within Ga0059261_2326 at 2436.463 kb on - strand, within Ga0059261_2326 at 2436.463 kb on - strand, within Ga0059261_2326 at 2436.682 kb on + strand at 2436.823 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.824 kb on + strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.825 kb on - strand at 2436.886 kb on + strand, within Ga0059261_2327 at 2436.886 kb on + strand, within Ga0059261_2327 at 2436.990 kb on + strand, within Ga0059261_2327 at 2436.990 kb on + strand, within Ga0059261_2327 at 2436.991 kb on - strand, within Ga0059261_2327 at 2436.991 kb on - strand, within Ga0059261_2327 at 2437.034 kb on + strand, within Ga0059261_2327 at 2437.154 kb on + strand, within Ga0059261_2327 at 2437.154 kb on + strand, within Ga0059261_2327 at 2437.154 kb on + strand, within Ga0059261_2327 at 2437.155 kb on - strand, within Ga0059261_2327 at 2437.226 kb on + strand, within Ga0059261_2327 at 2437.226 kb on + strand, within Ga0059261_2327 at 2437.226 kb on + strand, within Ga0059261_2327 at 2437.226 kb on + strand, within Ga0059261_2327 at 2437.227 kb on - strand, within Ga0059261_2327 at 2437.520 kb on - strand, within Ga0059261_2327
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,435,314 + -0.5 2,435,320 - -0.7 2,435,320 - -0.1 2,435,350 + -1.1 2,435,350 + +0.3 2,435,350 + -0.7 2,435,351 - -0.8 2,435,351 - -1.7 2,435,351 - -1.1 2,435,351 - +0.3 2,435,493 + Ga0059261_2324 0.37 -1.1 2,435,493 + Ga0059261_2324 0.37 -0.5 2,435,493 + Ga0059261_2324 0.37 -0.4 2,435,493 + Ga0059261_2324 0.37 -1.5 2,435,493 + Ga0059261_2324 0.37 -0.5 2,435,493 + Ga0059261_2324 0.37 -0.9 2,435,493 + Ga0059261_2324 0.37 -0.6 2,435,493 + Ga0059261_2324 0.37 +0.3 2,435,493 + Ga0059261_2324 0.37 -1.7 2,435,493 + Ga0059261_2324 0.37 -0.5 2,435,493 + Ga0059261_2324 0.37 -1.0 2,435,494 - Ga0059261_2324 0.37 +0.9 2,435,494 - Ga0059261_2324 0.37 -1.4 2,435,494 - Ga0059261_2324 0.37 -1.7 2,435,494 - Ga0059261_2324 0.37 -1.1 2,435,790 - Ga0059261_2325 0.30 -0.2 2,435,790 - Ga0059261_2325 0.30 +0.8 2,435,846 + Ga0059261_2325 0.46 +0.1 2,435,846 + Ga0059261_2325 0.46 +0.5 2,435,847 - Ga0059261_2325 0.46 +0.1 2,435,847 - Ga0059261_2325 0.46 -1.0 2,435,847 - Ga0059261_2325 0.46 -0.4 2,435,850 - Ga0059261_2325 0.47 -0.4 2,435,875 - Ga0059261_2325 0.54 +3.5 2,435,909 + Ga0059261_2325 0.64 +1.2 2,435,909 + Ga0059261_2325 0.64 +0.8 2,435,909 + Ga0059261_2325 0.64 -0.6 2,435,910 - Ga0059261_2325 0.64 -0.4 2,435,910 - Ga0059261_2325 0.64 -0.3 2,436,194 + Ga0059261_2326 0.29 -1.4 2,436,240 - +0.3 2,436,254 - Ga0059261_2326 0.40 -1.5 2,436,304 + Ga0059261_2326 0.49 -2.0 2,436,333 + Ga0059261_2326 0.54 -3.1 2,436,334 - Ga0059261_2326 0.55 -4.2 2,436,334 - Ga0059261_2326 0.55 -3.5 2,436,334 - Ga0059261_2326 0.55 -2.8 2,436,334 - Ga0059261_2326 0.55 -2.7 2,436,373 - Ga0059261_2326 0.62 -2.3 2,436,411 - Ga0059261_2326 0.69 -3.6 2,436,462 + Ga0059261_2326 0.78 -3.6 2,436,463 - Ga0059261_2326 0.78 -1.5 2,436,463 - Ga0059261_2326 0.78 -2.4 2,436,682 + -1.1 2,436,823 + +0.3 2,436,824 + -1.0 2,436,824 + -0.2 2,436,824 + +0.7 2,436,824 + -0.7 2,436,824 + -1.2 2,436,824 + -0.1 2,436,824 + -0.9 2,436,824 + -1.1 2,436,825 - +0.1 2,436,825 - +0.3 2,436,825 - -0.7 2,436,825 - +0.1 2,436,825 - +0.4 2,436,825 - +0.1 2,436,825 - +0.1 2,436,825 - -0.7 2,436,825 - +1.3 2,436,825 - +0.8 2,436,825 - -0.9 2,436,825 - +0.2 2,436,825 - -0.6 2,436,825 - -0.3 2,436,886 + Ga0059261_2327 0.11 -0.7 2,436,886 + Ga0059261_2327 0.11 -0.2 2,436,990 + Ga0059261_2327 0.15 -0.2 2,436,990 + Ga0059261_2327 0.15 -1.5 2,436,991 - Ga0059261_2327 0.15 -1.0 2,436,991 - Ga0059261_2327 0.15 +1.3 2,437,034 + Ga0059261_2327 0.17 -0.1 2,437,154 + Ga0059261_2327 0.21 -0.1 2,437,154 + Ga0059261_2327 0.21 +0.1 2,437,154 + Ga0059261_2327 0.21 +0.6 2,437,155 - Ga0059261_2327 0.21 +0.9 2,437,226 + Ga0059261_2327 0.24 -0.1 2,437,226 + Ga0059261_2327 0.24 +1.5 2,437,226 + Ga0059261_2327 0.24 -0.4 2,437,226 + Ga0059261_2327 0.24 -0.1 2,437,227 - Ga0059261_2327 0.24 -0.1 2,437,520 - Ga0059261_2327 0.35 +0.3
Or see this region's nucleotide sequence