Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2263

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2261 and Ga0059261_2262 are separated by 80 nucleotidesGa0059261_2262 and Ga0059261_2263 overlap by 4 nucleotidesGa0059261_2263 and Ga0059261_2264 are separated by 125 nucleotides Ga0059261_2261: Ga0059261_2261 - ATP-dependent DNA helicase RecQ, at 2,363,581 to 2,365,350 _2261 Ga0059261_2262: Ga0059261_2262 - Predicted acetyltransferase, at 2,365,431 to 2,365,721 _2262 Ga0059261_2263: Ga0059261_2263 - ATP phosphoribosyltransferase involved in histidine biosynthesis, at 2,365,718 to 2,366,809 _2263 Ga0059261_2264: Ga0059261_2264 - D-3-phosphoglycerate dehydrogenase, at 2,366,935 to 2,368,512 _2264 Position (kb) 2365 2366 2367Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2364.750 kb on + strand, within Ga0059261_2261at 2364.825 kb on + strand, within Ga0059261_2261at 2364.825 kb on + strand, within Ga0059261_2261at 2364.826 kb on - strand, within Ga0059261_2261at 2364.853 kb on + strand, within Ga0059261_2261at 2364.854 kb on - strand, within Ga0059261_2261at 2364.902 kb on + strand, within Ga0059261_2261at 2364.903 kb on - strand, within Ga0059261_2261at 2365.028 kb on + strand, within Ga0059261_2261at 2365.028 kb on + strand, within Ga0059261_2261at 2365.029 kb on - strand, within Ga0059261_2261at 2365.029 kb on - strand, within Ga0059261_2261at 2365.029 kb on - strand, within Ga0059261_2261at 2365.029 kb on - strand, within Ga0059261_2261at 2365.211 kb on + strandat 2365.211 kb on + strandat 2365.211 kb on + strandat 2365.211 kb on + strandat 2365.211 kb on + strandat 2365.212 kb on - strandat 2365.212 kb on - strandat 2365.212 kb on - strandat 2365.212 kb on - strandat 2365.360 kb on + strandat 2365.360 kb on + strandat 2365.360 kb on + strandat 2365.360 kb on + strandat 2365.360 kb on + strandat 2365.360 kb on + strandat 2365.360 kb on + strandat 2365.361 kb on - strandat 2365.361 kb on - strandat 2365.361 kb on - strandat 2365.361 kb on - strandat 2365.362 kb on + strandat 2365.362 kb on + strandat 2365.362 kb on + strandat 2365.396 kb on + strandat 2365.397 kb on - strandat 2365.397 kb on - strandat 2365.473 kb on + strand, within Ga0059261_2262at 2365.474 kb on - strand, within Ga0059261_2262at 2365.512 kb on + strandat 2365.512 kb on + strand, within Ga0059261_2262at 2365.512 kb on + strand, within Ga0059261_2262at 2365.512 kb on + strand, within Ga0059261_2262at 2365.513 kb on - strand, within Ga0059261_2262at 2365.618 kb on + strand, within Ga0059261_2262at 2365.618 kb on + strand, within Ga0059261_2262at 2365.618 kb on + strand, within Ga0059261_2262at 2365.618 kb on + strand, within Ga0059261_2262at 2365.619 kb on - strand, within Ga0059261_2262at 2365.619 kb on - strand, within Ga0059261_2262at 2365.619 kb on - strand, within Ga0059261_2262at 2365.619 kb on - strand, within Ga0059261_2262at 2365.632 kb on - strand, within Ga0059261_2262at 2365.632 kb on - strand, within Ga0059261_2262at 2365.632 kb on - strand, within Ga0059261_2262at 2365.632 kb on - strand, within Ga0059261_2262at 2365.668 kb on + strand, within Ga0059261_2262at 2365.668 kb on + strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.669 kb on - strand, within Ga0059261_2262at 2365.671 kb on - strand, within Ga0059261_2262at 2365.885 kb on + strand, within Ga0059261_2263at 2365.885 kb on + strand, within Ga0059261_2263at 2365.886 kb on - strand, within Ga0059261_2263at 2365.926 kb on - strand, within Ga0059261_2263at 2365.926 kb on - strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.968 kb on + strand, within Ga0059261_2263at 2365.969 kb on - strand, within Ga0059261_2263at 2365.969 kb on - strand, within Ga0059261_2263at 2366.038 kb on - strand, within Ga0059261_2263at 2366.038 kb on - strand, within Ga0059261_2263at 2366.502 kb on + strand, within Ga0059261_2263at 2366.502 kb on + strand, within Ga0059261_2263at 2366.503 kb on - strand, within Ga0059261_2263at 2366.503 kb on - strand, within Ga0059261_2263at 2366.503 kb on - strand, within Ga0059261_2263at 2366.703 kb on + strandat 2366.703 kb on + strandat 2366.704 kb on - strandat 2366.704 kb on - strandat 2366.704 kb on - strandat 2366.709 kb on + strandat 2366.709 kb on + strandat 2366.709 kb on + strandat 2366.709 kb on + strandat 2366.709 kb on + strandat 2366.709 kb on + strandat 2366.710 kb on - strandat 2366.710 kb on - strandat 2366.710 kb on - strandat 2366.710 kb on - strandat 2366.809 kb on + strandat 2366.809 kb on + strandat 2366.809 kb on + strandat 2366.809 kb on + strandat 2366.809 kb on + strandat 2366.809 kb on + strandat 2366.810 kb on - strandat 2366.810 kb on - strandat 2366.936 kb on + strandat 2366.937 kb on - strandat 2367.031 kb on + strandat 2367.031 kb on + strandat 2367.032 kb on - strandat 2367.032 kb on - strandat 2367.078 kb on + strandat 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.149 kb on + strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.150 kb on - strand, within Ga0059261_2264at 2367.531 kb on + strand, within Ga0059261_2264at 2367.531 kb on + strand, within Ga0059261_2264at 2367.531 kb on + strand, within Ga0059261_2264at 2367.531 kb on + strand, within Ga0059261_2264at 2367.531 kb on + strand, within Ga0059261_2264at 2367.531 kb on + strand, within Ga0059261_2264at 2367.532 kb on - strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.533 kb on + strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strandat 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.534 kb on - strand, within Ga0059261_2264at 2367.611 kb on + strand, within Ga0059261_2264at 2367.611 kb on + strand, within Ga0059261_2264at 2367.612 kb on - strand, within Ga0059261_2264at 2367.612 kb on - strand, within Ga0059261_2264at 2367.612 kb on - strand, within Ga0059261_2264at 2367.612 kb on - strand, within Ga0059261_2264

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,364,750 + Ga0059261_2261 0.66 -0.7
2,364,825 + Ga0059261_2261 0.70 +0.6
2,364,825 + Ga0059261_2261 0.70 -0.8
2,364,826 - Ga0059261_2261 0.70 -0.3
2,364,853 + Ga0059261_2261 0.72 +0.0
2,364,854 - Ga0059261_2261 0.72 -0.7
2,364,902 + Ga0059261_2261 0.75 -0.2
2,364,903 - Ga0059261_2261 0.75 -0.5
2,365,028 + Ga0059261_2261 0.82 -1.1
2,365,028 + Ga0059261_2261 0.82 +0.5
2,365,029 - Ga0059261_2261 0.82 +0.6
2,365,029 - Ga0059261_2261 0.82 -1.6
2,365,029 - Ga0059261_2261 0.82 +0.4
2,365,029 - Ga0059261_2261 0.82 -1.5
2,365,211 + +0.1
2,365,211 + +0.1
2,365,211 + +0.1
2,365,211 + -0.7
2,365,211 + +0.3
2,365,212 - -0.5
2,365,212 - -0.7
2,365,212 - -0.4
2,365,212 - -0.1
2,365,360 + -0.6
2,365,360 + +0.1
2,365,360 + -0.2
2,365,360 + -1.3
2,365,360 + +1.2
2,365,360 + +0.2
2,365,360 + +1.1
2,365,361 - +0.6
2,365,361 - +0.1
2,365,361 - -0.1
2,365,361 - +2.4
2,365,362 + +0.2
2,365,362 + +0.3
2,365,362 + -0.4
2,365,396 + -0.2
2,365,397 - +1.5
2,365,397 - +0.5
2,365,473 + Ga0059261_2262 0.14 -0.6
2,365,474 - Ga0059261_2262 0.15 -1.1
2,365,512 + +1.5
2,365,512 + Ga0059261_2262 0.28 +0.5
2,365,512 + Ga0059261_2262 0.28 -0.8
2,365,512 + Ga0059261_2262 0.28 -0.6
2,365,513 - Ga0059261_2262 0.28 -0.1
2,365,618 + Ga0059261_2262 0.64 +1.7
2,365,618 + Ga0059261_2262 0.64 +0.2
2,365,618 + Ga0059261_2262 0.64 -0.3
2,365,618 + Ga0059261_2262 0.64 +0.3
2,365,619 - Ga0059261_2262 0.65 +0.5
2,365,619 - Ga0059261_2262 0.65 -0.9
2,365,619 - Ga0059261_2262 0.65 +0.9
2,365,619 - Ga0059261_2262 0.65 +0.9
2,365,632 - Ga0059261_2262 0.69 +0.5
2,365,632 - Ga0059261_2262 0.69 -1.5
2,365,632 - Ga0059261_2262 0.69 -0.2
2,365,632 - Ga0059261_2262 0.69 +0.4
2,365,668 + Ga0059261_2262 0.81 -1.2
2,365,668 + Ga0059261_2262 0.81 +0.1
2,365,669 - Ga0059261_2262 0.82 -0.4
2,365,669 - Ga0059261_2262 0.82 -0.1
2,365,669 - Ga0059261_2262 0.82 -1.2
2,365,669 - Ga0059261_2262 0.82 -0.4
2,365,669 - Ga0059261_2262 0.82 -0.1
2,365,669 - Ga0059261_2262 0.82 -0.2
2,365,669 - Ga0059261_2262 0.82 -0.0
2,365,669 - Ga0059261_2262 0.82 -0.1
2,365,669 - Ga0059261_2262 0.82 -0.3
2,365,669 - Ga0059261_2262 0.82 +0.3
2,365,671 - Ga0059261_2262 0.82 -0.3
2,365,885 + Ga0059261_2263 0.15 -2.5
2,365,885 + Ga0059261_2263 0.15 -4.4
2,365,886 - Ga0059261_2263 0.15 -3.3
2,365,926 - Ga0059261_2263 0.19 -2.2
2,365,926 - Ga0059261_2263 0.19 -3.5
2,365,968 + Ga0059261_2263 0.23 -3.0
2,365,968 + Ga0059261_2263 0.23 -1.6
2,365,968 + Ga0059261_2263 0.23 -3.5
2,365,968 + Ga0059261_2263 0.23 -0.9
2,365,968 + Ga0059261_2263 0.23 -2.4
2,365,968 + Ga0059261_2263 0.23 -3.9
2,365,968 + Ga0059261_2263 0.23 -2.4
2,365,968 + Ga0059261_2263 0.23 -2.6
2,365,969 - Ga0059261_2263 0.23 -2.1
2,365,969 - Ga0059261_2263 0.23 -3.8
2,366,038 - Ga0059261_2263 0.29 -3.6
2,366,038 - Ga0059261_2263 0.29 -3.3
2,366,502 + Ga0059261_2263 0.72 -3.1
2,366,502 + Ga0059261_2263 0.72 -2.7
2,366,503 - Ga0059261_2263 0.72 -1.7
2,366,503 - Ga0059261_2263 0.72 -3.8
2,366,503 - Ga0059261_2263 0.72 -1.4
2,366,703 + -4.0
2,366,703 + -1.7
2,366,704 - -0.9
2,366,704 - -4.2
2,366,704 - -2.0
2,366,709 + -4.9
2,366,709 + -1.4
2,366,709 + -4.7
2,366,709 + -1.3
2,366,709 + -3.2
2,366,709 + -4.3
2,366,710 - -4.6
2,366,710 - -4.1
2,366,710 - -2.9
2,366,710 - -3.1
2,366,809 + -2.0
2,366,809 + -0.8
2,366,809 + -1.2
2,366,809 + -2.3
2,366,809 + -2.6
2,366,809 + -0.3
2,366,810 - +0.3
2,366,810 - +0.1
2,366,936 + -1.1
2,366,937 - -0.1
2,367,031 + -1.8
2,367,031 + -0.4
2,367,032 - -2.2
2,367,032 - -1.6
2,367,078 + -0.1
2,367,149 + Ga0059261_2264 0.14 -1.6
2,367,149 + Ga0059261_2264 0.14 -2.8
2,367,149 + Ga0059261_2264 0.14 -0.6
2,367,149 + Ga0059261_2264 0.14 -2.6
2,367,149 + Ga0059261_2264 0.14 -3.3
2,367,149 + Ga0059261_2264 0.14 -2.1
2,367,149 + Ga0059261_2264 0.14 -3.6
2,367,149 + Ga0059261_2264 0.14 -2.9
2,367,149 + Ga0059261_2264 0.14 -2.4
2,367,149 + Ga0059261_2264 0.14 -1.6
2,367,149 + Ga0059261_2264 0.14 -1.5
2,367,149 + Ga0059261_2264 0.14 -3.3
2,367,149 + Ga0059261_2264 0.14 -1.6
2,367,150 - Ga0059261_2264 0.14 -3.4
2,367,150 - Ga0059261_2264 0.14 -3.3
2,367,150 - Ga0059261_2264 0.14 -3.5
2,367,150 - Ga0059261_2264 0.14 -2.4
2,367,150 - Ga0059261_2264 0.14 -1.9
2,367,150 - Ga0059261_2264 0.14 -4.0
2,367,150 - Ga0059261_2264 0.14 -2.4
2,367,150 - Ga0059261_2264 0.14 -2.9
2,367,150 - Ga0059261_2264 0.14 -0.1
2,367,150 - Ga0059261_2264 0.14 -3.1
2,367,150 - Ga0059261_2264 0.14 -2.7
2,367,531 + Ga0059261_2264 0.38 -1.2
2,367,531 + Ga0059261_2264 0.38 -4.3
2,367,531 + Ga0059261_2264 0.38 -4.2
2,367,531 + Ga0059261_2264 0.38 -3.6
2,367,531 + Ga0059261_2264 0.38 -2.1
2,367,531 + Ga0059261_2264 0.38 -1.4
2,367,532 - Ga0059261_2264 0.38 -5.1
2,367,533 + Ga0059261_2264 0.38 -1.5
2,367,533 + Ga0059261_2264 0.38 -2.4
2,367,533 + Ga0059261_2264 0.38 -1.4
2,367,533 + Ga0059261_2264 0.38 -1.5
2,367,533 + Ga0059261_2264 0.38 -2.2
2,367,533 + Ga0059261_2264 0.38 -3.2
2,367,533 + Ga0059261_2264 0.38 -4.2
2,367,533 + Ga0059261_2264 0.38 -3.5
2,367,533 + Ga0059261_2264 0.38 -2.7
2,367,534 - Ga0059261_2264 0.38 -3.4
2,367,534 - Ga0059261_2264 0.38 -1.5
2,367,534 - -0.4
2,367,534 - Ga0059261_2264 0.38 -1.8
2,367,534 - Ga0059261_2264 0.38 -2.6
2,367,534 - Ga0059261_2264 0.38 +0.4
2,367,534 - Ga0059261_2264 0.38 -3.0
2,367,534 - Ga0059261_2264 0.38 -1.8
2,367,534 - Ga0059261_2264 0.38 -5.2
2,367,534 - Ga0059261_2264 0.38 -2.8
2,367,611 + Ga0059261_2264 0.43 -2.2
2,367,611 + Ga0059261_2264 0.43 -0.9
2,367,612 - Ga0059261_2264 0.43 -3.8
2,367,612 - Ga0059261_2264 0.43 -2.5
2,367,612 - Ga0059261_2264 0.43 -4.2
2,367,612 - Ga0059261_2264 0.43 -3.1

Or see this region's nucleotide sequence