Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1638

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1637 and Ga0059261_1638 are separated by 81 nucleotidesGa0059261_1638 and Ga0059261_1639 are separated by 35 nucleotides Ga0059261_1637: Ga0059261_1637 - Chitinase, at 1,719,672 to 1,720,730 _1637 Ga0059261_1638: Ga0059261_1638 - transcriptional regulator, GntR family, at 1,720,812 to 1,721,549 _1638 Ga0059261_1639: Ga0059261_1639 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 1,721,585 to 1,723,069 _1639 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1720.133 kb on - strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.179 kb on + strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.180 kb on - strand, within Ga0059261_1637at 1720.254 kb on + strand, within Ga0059261_1637at 1720.255 kb on - strand, within Ga0059261_1637at 1720.255 kb on - strand, within Ga0059261_1637at 1720.255 kb on - strand, within Ga0059261_1637at 1720.255 kb on - strand, within Ga0059261_1637at 1720.255 kb on - strand, within Ga0059261_1637at 1720.255 kb on - strand, within Ga0059261_1637at 1720.290 kb on + strand, within Ga0059261_1637at 1720.290 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.317 kb on + strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.318 kb on - strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.449 kb on + strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.450 kb on - strand, within Ga0059261_1637at 1720.456 kb on - strand, within Ga0059261_1637at 1720.488 kb on + strand, within Ga0059261_1637at 1720.489 kb on - strand, within Ga0059261_1637at 1720.489 kb on - strand, within Ga0059261_1637at 1720.524 kb on - strandat 1720.563 kb on + strand, within Ga0059261_1637at 1720.563 kb on + strand, within Ga0059261_1637at 1720.563 kb on + strand, within Ga0059261_1637at 1720.563 kb on + strand, within Ga0059261_1637at 1720.563 kb on + strand, within Ga0059261_1637at 1720.563 kb on + strand, within Ga0059261_1637at 1720.563 kb on + strand, within Ga0059261_1637at 1720.564 kb on - strand, within Ga0059261_1637at 1720.564 kb on - strand, within Ga0059261_1637at 1720.564 kb on - strand, within Ga0059261_1637at 1720.564 kb on - strand, within Ga0059261_1637at 1720.564 kb on - strand, within Ga0059261_1637at 1720.771 kb on + strandat 1720.771 kb on + strandat 1720.771 kb on + strandat 1720.772 kb on - strandat 1720.772 kb on - strandat 1720.772 kb on - strandat 1720.775 kb on - strandat 1720.775 kb on - strandat 1720.775 kb on - strandat 1720.866 kb on + strandat 1720.866 kb on + strandat 1720.866 kb on + strandat 1720.866 kb on + strandat 1720.867 kb on - strandat 1720.867 kb on - strandat 1721.217 kb on + strand, within Ga0059261_1638at 1721.217 kb on + strand, within Ga0059261_1638at 1721.217 kb on + strand, within Ga0059261_1638at 1721.218 kb on - strand, within Ga0059261_1638at 1721.218 kb on - strand, within Ga0059261_1638at 1721.218 kb on - strand, within Ga0059261_1638at 1721.218 kb on - strand, within Ga0059261_1638at 1721.218 kb on - strand, within Ga0059261_1638at 1721.239 kb on - strand, within Ga0059261_1638at 1721.239 kb on - strand, within Ga0059261_1638at 1721.249 kb on + strand, within Ga0059261_1638at 1721.249 kb on + strand, within Ga0059261_1638at 1721.250 kb on - strand, within Ga0059261_1638at 1721.250 kb on - strand, within Ga0059261_1638at 1721.250 kb on - strand, within Ga0059261_1638at 1721.250 kb on - strand, within Ga0059261_1638at 1721.268 kb on + strand, within Ga0059261_1638at 1721.268 kb on + strand, within Ga0059261_1638at 1721.269 kb on - strand, within Ga0059261_1638at 1721.286 kb on + strand, within Ga0059261_1638at 1721.286 kb on + strand, within Ga0059261_1638at 1721.287 kb on - strand, within Ga0059261_1638at 1721.393 kb on + strand, within Ga0059261_1638at 1721.502 kb on + strandat 1721.502 kb on + strandat 1721.502 kb on + strandat 1721.502 kb on + strandat 1721.502 kb on + strandat 1721.502 kb on + strandat 1721.502 kb on + strandat 1721.503 kb on - strandat 1721.503 kb on - strandat 1721.503 kb on - strandat 1721.503 kb on - strandat 1721.505 kb on + strandat 1721.520 kb on + strandat 1721.520 kb on + strandat 1721.520 kb on + strandat 1721.521 kb on - strandat 1721.521 kb on - strandat 1721.521 kb on - strandat 1721.521 kb on - strandat 1721.521 kb on - strandat 1721.521 kb on - strandat 1721.521 kb on - strandat 1721.587 kb on - strandat 1721.729 kb on + strandat 1721.729 kb on + strandat 1721.730 kb on - strandat 1721.730 kb on - strandat 1721.730 kb on - strandat 1721.730 kb on - strandat 1721.730 kb on - strandat 1721.903 kb on + strand, within Ga0059261_1639at 1721.904 kb on + strand, within Ga0059261_1639at 1721.904 kb on + strand, within Ga0059261_1639at 1721.905 kb on - strand, within Ga0059261_1639at 1721.905 kb on - strand, within Ga0059261_1639at 1721.905 kb on - strand, within Ga0059261_1639at 1721.905 kb on - strand, within Ga0059261_1639at 1722.228 kb on + strand, within Ga0059261_1639at 1722.228 kb on + strand, within Ga0059261_1639at 1722.228 kb on + strand, within Ga0059261_1639at 1722.229 kb on - strand, within Ga0059261_1639at 1722.229 kb on - strand, within Ga0059261_1639at 1722.234 kb on + strand, within Ga0059261_1639at 1722.234 kb on + strand, within Ga0059261_1639at 1722.234 kb on + strand, within Ga0059261_1639at 1722.234 kb on + strand, within Ga0059261_1639at 1722.234 kb on + strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.235 kb on - strand, within Ga0059261_1639at 1722.440 kb on - strand, within Ga0059261_1639at 1722.490 kb on + strand, within Ga0059261_1639at 1722.490 kb on + strand, within Ga0059261_1639at 1722.490 kb on + strand, within Ga0059261_1639at 1722.490 kb on + strand, within Ga0059261_1639at 1722.492 kb on + strand, within Ga0059261_1639at 1722.492 kb on + strand, within Ga0059261_1639at 1722.492 kb on + strand, within Ga0059261_1639at 1722.493 kb on - strand, within Ga0059261_1639at 1722.493 kb on - strand, within Ga0059261_1639at 1722.493 kb on - strand, within Ga0059261_1639at 1722.493 kb on - strand, within Ga0059261_1639

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,720,133 - Ga0059261_1637 0.44 +0.1
1,720,179 + Ga0059261_1637 0.48 -0.5
1,720,179 + Ga0059261_1637 0.48 -1.0
1,720,179 + Ga0059261_1637 0.48 +0.0
1,720,179 + Ga0059261_1637 0.48 +0.5
1,720,179 + Ga0059261_1637 0.48 -0.9
1,720,179 + Ga0059261_1637 0.48 -0.0
1,720,179 + Ga0059261_1637 0.48 -1.3
1,720,180 - Ga0059261_1637 0.48 -0.1
1,720,180 - Ga0059261_1637 0.48 +1.3
1,720,180 - Ga0059261_1637 0.48 -0.1
1,720,180 - Ga0059261_1637 0.48 +0.1
1,720,180 - Ga0059261_1637 0.48 -0.6
1,720,180 - Ga0059261_1637 0.48 +0.4
1,720,180 - Ga0059261_1637 0.48 +0.4
1,720,180 - Ga0059261_1637 0.48 -1.3
1,720,180 - Ga0059261_1637 0.48 -0.1
1,720,180 - Ga0059261_1637 0.48 +0.5
1,720,180 - Ga0059261_1637 0.48 +1.8
1,720,254 + Ga0059261_1637 0.55 -0.3
1,720,255 - Ga0059261_1637 0.55 -0.0
1,720,255 - Ga0059261_1637 0.55 +0.7
1,720,255 - Ga0059261_1637 0.55 +1.6
1,720,255 - Ga0059261_1637 0.55 -1.9
1,720,255 - Ga0059261_1637 0.55 +0.2
1,720,255 - Ga0059261_1637 0.55 -0.3
1,720,290 + Ga0059261_1637 0.58 +0.3
1,720,290 + Ga0059261_1637 0.58 -0.7
1,720,317 + Ga0059261_1637 0.61 -0.3
1,720,317 + Ga0059261_1637 0.61 -0.2
1,720,317 + Ga0059261_1637 0.61 +0.2
1,720,317 + Ga0059261_1637 0.61 +0.0
1,720,317 + Ga0059261_1637 0.61 -0.4
1,720,317 + Ga0059261_1637 0.61 +0.4
1,720,317 + Ga0059261_1637 0.61 +0.5
1,720,318 - Ga0059261_1637 0.61 +0.5
1,720,318 - Ga0059261_1637 0.61 -0.2
1,720,318 - Ga0059261_1637 0.61 -0.5
1,720,318 - Ga0059261_1637 0.61 +1.1
1,720,318 - Ga0059261_1637 0.61 -0.1
1,720,318 - Ga0059261_1637 0.61 -0.0
1,720,318 - Ga0059261_1637 0.61 +0.3
1,720,318 - Ga0059261_1637 0.61 -0.4
1,720,449 + Ga0059261_1637 0.73 -0.1
1,720,449 + Ga0059261_1637 0.73 -0.7
1,720,449 + Ga0059261_1637 0.73 -0.1
1,720,449 + Ga0059261_1637 0.73 +0.4
1,720,449 + Ga0059261_1637 0.73 -0.4
1,720,449 + Ga0059261_1637 0.73 -0.3
1,720,449 + Ga0059261_1637 0.73 -0.1
1,720,449 + Ga0059261_1637 0.73 +0.3
1,720,449 + Ga0059261_1637 0.73 +0.4
1,720,449 + Ga0059261_1637 0.73 +0.5
1,720,449 + Ga0059261_1637 0.73 -0.0
1,720,449 + Ga0059261_1637 0.73 -0.2
1,720,449 + Ga0059261_1637 0.73 +0.2
1,720,450 - Ga0059261_1637 0.73 -0.6
1,720,450 - Ga0059261_1637 0.73 -0.8
1,720,450 - Ga0059261_1637 0.73 +0.4
1,720,450 - Ga0059261_1637 0.73 +0.2
1,720,450 - Ga0059261_1637 0.73 -0.2
1,720,450 - Ga0059261_1637 0.73 -0.3
1,720,450 - Ga0059261_1637 0.73 -0.3
1,720,456 - Ga0059261_1637 0.74 -0.3
1,720,488 + Ga0059261_1637 0.77 -1.2
1,720,489 - Ga0059261_1637 0.77 +0.6
1,720,489 - Ga0059261_1637 0.77 -0.6
1,720,524 - +2.8
1,720,563 + Ga0059261_1637 0.84 -0.4
1,720,563 + Ga0059261_1637 0.84 -1.3
1,720,563 + Ga0059261_1637 0.84 +0.1
1,720,563 + Ga0059261_1637 0.84 +0.1
1,720,563 + Ga0059261_1637 0.84 -1.5
1,720,563 + Ga0059261_1637 0.84 +1.2
1,720,563 + Ga0059261_1637 0.84 +1.0
1,720,564 - Ga0059261_1637 0.84 -0.6
1,720,564 - Ga0059261_1637 0.84 -0.4
1,720,564 - Ga0059261_1637 0.84 -0.1
1,720,564 - Ga0059261_1637 0.84 +0.6
1,720,564 - Ga0059261_1637 0.84 -0.3
1,720,771 + +0.0
1,720,771 + -0.2
1,720,771 + -0.2
1,720,772 - -1.3
1,720,772 - -0.5
1,720,772 - -1.5
1,720,775 - +0.4
1,720,775 - +0.5
1,720,775 - -1.1
1,720,866 + -1.9
1,720,866 + -3.1
1,720,866 + -1.0
1,720,866 + -0.3
1,720,867 - -1.7
1,720,867 - -1.5
1,721,217 + Ga0059261_1638 0.55 -1.3
1,721,217 + Ga0059261_1638 0.55 -0.6
1,721,217 + Ga0059261_1638 0.55 -0.3
1,721,218 - Ga0059261_1638 0.55 -0.0
1,721,218 - Ga0059261_1638 0.55 +0.4
1,721,218 - Ga0059261_1638 0.55 -2.1
1,721,218 - Ga0059261_1638 0.55 -2.2
1,721,218 - Ga0059261_1638 0.55 -0.8
1,721,239 - Ga0059261_1638 0.58 -0.9
1,721,239 - Ga0059261_1638 0.58 -0.2
1,721,249 + Ga0059261_1638 0.59 -2.2
1,721,249 + Ga0059261_1638 0.59 -1.5
1,721,250 - Ga0059261_1638 0.59 +0.1
1,721,250 - Ga0059261_1638 0.59 -1.6
1,721,250 - Ga0059261_1638 0.59 -0.9
1,721,250 - Ga0059261_1638 0.59 -1.1
1,721,268 + Ga0059261_1638 0.62 +0.8
1,721,268 + Ga0059261_1638 0.62 +0.4
1,721,269 - Ga0059261_1638 0.62 -3.0
1,721,286 + Ga0059261_1638 0.64 -2.0
1,721,286 + Ga0059261_1638 0.64 -1.5
1,721,287 - Ga0059261_1638 0.64 -2.0
1,721,393 + Ga0059261_1638 0.79 -1.8
1,721,502 + -0.8
1,721,502 + -0.1
1,721,502 + -0.2
1,721,502 + -1.5
1,721,502 + -1.4
1,721,502 + -1.0
1,721,502 + -0.5
1,721,503 - -1.1
1,721,503 - -0.8
1,721,503 - -2.0
1,721,503 - -0.7
1,721,505 + -1.8
1,721,520 + -1.1
1,721,520 + -1.4
1,721,520 + -0.4
1,721,521 - -0.6
1,721,521 - +0.0
1,721,521 - -1.9
1,721,521 - -1.3
1,721,521 - -0.4
1,721,521 - -0.5
1,721,521 - -1.5
1,721,587 - -0.3
1,721,729 + -0.4
1,721,729 + -0.9
1,721,730 - +0.2
1,721,730 - +1.1
1,721,730 - -0.6
1,721,730 - -0.8
1,721,730 - +0.4
1,721,903 + Ga0059261_1639 0.21 -0.1
1,721,904 + Ga0059261_1639 0.21 -1.0
1,721,904 + Ga0059261_1639 0.21 -0.3
1,721,905 - Ga0059261_1639 0.22 -0.2
1,721,905 - Ga0059261_1639 0.22 -1.0
1,721,905 - Ga0059261_1639 0.22 -1.3
1,721,905 - Ga0059261_1639 0.22 -0.4
1,722,228 + Ga0059261_1639 0.43 -0.4
1,722,228 + Ga0059261_1639 0.43 -0.1
1,722,228 + Ga0059261_1639 0.43 -0.2
1,722,229 - Ga0059261_1639 0.43 +1.0
1,722,229 - Ga0059261_1639 0.43 +0.0
1,722,234 + Ga0059261_1639 0.44 +0.2
1,722,234 + Ga0059261_1639 0.44 -0.8
1,722,234 + Ga0059261_1639 0.44 -0.1
1,722,234 + Ga0059261_1639 0.44 -0.3
1,722,234 + Ga0059261_1639 0.44 -0.2
1,722,235 - Ga0059261_1639 0.44 +0.1
1,722,235 - Ga0059261_1639 0.44 +0.6
1,722,235 - Ga0059261_1639 0.44 -0.4
1,722,235 - Ga0059261_1639 0.44 +0.6
1,722,235 - Ga0059261_1639 0.44 -0.6
1,722,235 - Ga0059261_1639 0.44 +0.6
1,722,235 - Ga0059261_1639 0.44 -0.1
1,722,235 - Ga0059261_1639 0.44 -0.8
1,722,235 - Ga0059261_1639 0.44 -0.5
1,722,235 - Ga0059261_1639 0.44 -0.4
1,722,235 - Ga0059261_1639 0.44 -0.0
1,722,440 - Ga0059261_1639 0.58 +2.2
1,722,490 + Ga0059261_1639 0.61 -0.1
1,722,490 + Ga0059261_1639 0.61 +0.0
1,722,490 + Ga0059261_1639 0.61 +1.0
1,722,490 + Ga0059261_1639 0.61 +1.1
1,722,492 + Ga0059261_1639 0.61 +0.8
1,722,492 + Ga0059261_1639 0.61 -0.5
1,722,492 + Ga0059261_1639 0.61 -0.1
1,722,493 - Ga0059261_1639 0.61 -0.2
1,722,493 - Ga0059261_1639 0.61 -0.2
1,722,493 - Ga0059261_1639 0.61 +1.8
1,722,493 - Ga0059261_1639 0.61 -0.2

Or see this region's nucleotide sequence