Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1605

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1604 and Ga0059261_1605 overlap by 4 nucleotidesGa0059261_1605 and Ga0059261_1606 are separated by 36 nucleotidesGa0059261_1606 and Ga0059261_1607 overlap by 4 nucleotides Ga0059261_1604: Ga0059261_1604 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 1,681,453 to 1,682,793 _1604 Ga0059261_1605: Ga0059261_1605 - transcriptional regulator, TetR family, at 1,682,790 to 1,683,422 _1605 Ga0059261_1606: Ga0059261_1606 - Domain of unknown function (DUF4281), at 1,683,459 to 1,683,902 _1606 Ga0059261_1607: Ga0059261_1607 - hypothetical protein, at 1,683,899 to 1,684,723 _1607 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1681.798 kb on + strandat 1681.798 kb on + strandat 1681.798 kb on + strand, within Ga0059261_1604at 1681.798 kb on + strand, within Ga0059261_1604at 1681.798 kb on + strand, within Ga0059261_1604at 1681.799 kb on - strand, within Ga0059261_1604at 1681.855 kb on - strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.960 kb on + strand, within Ga0059261_1604at 1681.961 kb on - strand, within Ga0059261_1604at 1681.961 kb on - strand, within Ga0059261_1604at 1681.961 kb on - strand, within Ga0059261_1604at 1681.961 kb on - strand, within Ga0059261_1604at 1681.961 kb on - strand, within Ga0059261_1604at 1681.961 kb on - strand, within Ga0059261_1604at 1681.975 kb on + strand, within Ga0059261_1604at 1681.975 kb on + strand, within Ga0059261_1604at 1681.975 kb on + strand, within Ga0059261_1604at 1681.975 kb on + strand, within Ga0059261_1604at 1681.976 kb on - strand, within Ga0059261_1604at 1681.976 kb on - strand, within Ga0059261_1604at 1682.167 kb on + strand, within Ga0059261_1604at 1682.168 kb on - strand, within Ga0059261_1604at 1682.277 kb on + strand, within Ga0059261_1604at 1682.278 kb on - strand, within Ga0059261_1604at 1682.318 kb on - strand, within Ga0059261_1604at 1682.318 kb on - strand, within Ga0059261_1604at 1682.449 kb on + strand, within Ga0059261_1604at 1682.449 kb on + strand, within Ga0059261_1604at 1682.473 kb on + strand, within Ga0059261_1604at 1682.474 kb on - strand, within Ga0059261_1604at 1682.474 kb on - strand, within Ga0059261_1604at 1682.474 kb on - strand, within Ga0059261_1604at 1682.791 kb on + strandat 1682.791 kb on + strandat 1682.791 kb on + strandat 1682.792 kb on - strandat 1682.792 kb on - strandat 1682.941 kb on - strand, within Ga0059261_1605at 1682.941 kb on - strand, within Ga0059261_1605at 1683.026 kb on - strand, within Ga0059261_1605at 1683.026 kb on - strand, within Ga0059261_1605at 1683.106 kb on + strand, within Ga0059261_1605at 1683.106 kb on + strand, within Ga0059261_1605at 1683.106 kb on + strand, within Ga0059261_1605at 1683.106 kb on + strand, within Ga0059261_1605at 1683.106 kb on + strand, within Ga0059261_1605at 1683.106 kb on + strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.107 kb on - strand, within Ga0059261_1605at 1683.367 kb on + strandat 1683.367 kb on + strandat 1683.367 kb on + strandat 1683.367 kb on + strandat 1683.367 kb on + strandat 1683.367 kb on + strandat 1683.367 kb on + strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.368 kb on - strandat 1683.422 kb on + strandat 1683.559 kb on - strand, within Ga0059261_1606at 1683.610 kb on - strand, within Ga0059261_1606at 1683.610 kb on - strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.726 kb on + strand, within Ga0059261_1606at 1683.727 kb on - strand, within Ga0059261_1606at 1683.727 kb on - strand, within Ga0059261_1606at 1683.727 kb on - strand, within Ga0059261_1606at 1683.855 kb on + strand, within Ga0059261_1606at 1683.855 kb on + strand, within Ga0059261_1606at 1683.855 kb on + strand, within Ga0059261_1606at 1683.855 kb on + strand, within Ga0059261_1606at 1683.855 kb on + strand, within Ga0059261_1606at 1683.856 kb on - strand, within Ga0059261_1606at 1683.973 kb on + strandat 1683.973 kb on + strandat 1683.980 kb on + strandat 1684.011 kb on + strand, within Ga0059261_1607at 1684.011 kb on + strand, within Ga0059261_1607at 1684.012 kb on - strand, within Ga0059261_1607at 1684.012 kb on - strand, within Ga0059261_1607at 1684.063 kb on + strand, within Ga0059261_1607at 1684.063 kb on + strand, within Ga0059261_1607at 1684.063 kb on + strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.064 kb on - strand, within Ga0059261_1607at 1684.136 kb on + strand, within Ga0059261_1607at 1684.136 kb on + strand, within Ga0059261_1607at 1684.136 kb on + strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.137 kb on - strand, within Ga0059261_1607at 1684.220 kb on + strand, within Ga0059261_1607at 1684.220 kb on + strand, within Ga0059261_1607at 1684.220 kb on + strand, within Ga0059261_1607at 1684.220 kb on + strand, within Ga0059261_1607at 1684.221 kb on - strandat 1684.221 kb on - strand, within Ga0059261_1607at 1684.221 kb on - strand, within Ga0059261_1607at 1684.221 kb on - strand, within Ga0059261_1607at 1684.221 kb on - strand, within Ga0059261_1607at 1684.221 kb on - strand, within Ga0059261_1607at 1684.221 kb on - strand, within Ga0059261_1607at 1684.221 kb on - strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.292 kb on + strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.293 kb on - strand, within Ga0059261_1607at 1684.339 kb on - strand, within Ga0059261_1607

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,681,798 + -0.2
1,681,798 + +0.2
1,681,798 + Ga0059261_1604 0.26 +0.9
1,681,798 + Ga0059261_1604 0.26 +0.0
1,681,798 + Ga0059261_1604 0.26 +0.3
1,681,799 - Ga0059261_1604 0.26 +0.4
1,681,855 - Ga0059261_1604 0.30 +0.3
1,681,960 + Ga0059261_1604 0.38 +0.6
1,681,960 + Ga0059261_1604 0.38 +0.7
1,681,960 + Ga0059261_1604 0.38 +0.0
1,681,960 + Ga0059261_1604 0.38 -0.8
1,681,960 + Ga0059261_1604 0.38 +0.1
1,681,960 + Ga0059261_1604 0.38 +0.4
1,681,960 + Ga0059261_1604 0.38 +0.3
1,681,960 + Ga0059261_1604 0.38 +0.7
1,681,961 - Ga0059261_1604 0.38 +0.3
1,681,961 - Ga0059261_1604 0.38 -0.4
1,681,961 - Ga0059261_1604 0.38 +1.4
1,681,961 - Ga0059261_1604 0.38 -1.0
1,681,961 - Ga0059261_1604 0.38 -0.3
1,681,961 - Ga0059261_1604 0.38 +0.1
1,681,975 + Ga0059261_1604 0.39 -1.4
1,681,975 + Ga0059261_1604 0.39 -0.6
1,681,975 + Ga0059261_1604 0.39 +0.1
1,681,975 + Ga0059261_1604 0.39 +0.2
1,681,976 - Ga0059261_1604 0.39 +0.8
1,681,976 - Ga0059261_1604 0.39 +1.2
1,682,167 + Ga0059261_1604 0.53 -0.4
1,682,168 - Ga0059261_1604 0.53 +0.6
1,682,277 + Ga0059261_1604 0.61 +1.1
1,682,278 - Ga0059261_1604 0.62 -0.3
1,682,318 - Ga0059261_1604 0.65 -0.7
1,682,318 - Ga0059261_1604 0.65 +1.6
1,682,449 + Ga0059261_1604 0.74 -1.8
1,682,449 + Ga0059261_1604 0.74 -0.4
1,682,473 + Ga0059261_1604 0.76 -0.5
1,682,474 - Ga0059261_1604 0.76 -1.0
1,682,474 - Ga0059261_1604 0.76 -1.1
1,682,474 - Ga0059261_1604 0.76 +0.6
1,682,791 + -0.7
1,682,791 + +0.3
1,682,791 + +0.2
1,682,792 - -1.8
1,682,792 - +0.1
1,682,941 - Ga0059261_1605 0.24 -0.9
1,682,941 - Ga0059261_1605 0.24 -1.2
1,683,026 - Ga0059261_1605 0.37 -0.2
1,683,026 - Ga0059261_1605 0.37 -1.8
1,683,106 + Ga0059261_1605 0.50 -1.4
1,683,106 + Ga0059261_1605 0.50 -2.1
1,683,106 + Ga0059261_1605 0.50 -3.5
1,683,106 + Ga0059261_1605 0.50 -1.3
1,683,106 + Ga0059261_1605 0.50 -1.9
1,683,106 + Ga0059261_1605 0.50 -2.7
1,683,107 - Ga0059261_1605 0.50 -0.6
1,683,107 - Ga0059261_1605 0.50 -4.8
1,683,107 - Ga0059261_1605 0.50 -0.6
1,683,107 - Ga0059261_1605 0.50 -2.7
1,683,107 - Ga0059261_1605 0.50 -2.5
1,683,107 - Ga0059261_1605 0.50 -3.1
1,683,107 - Ga0059261_1605 0.50 -1.3
1,683,107 - Ga0059261_1605 0.50 -2.6
1,683,367 + -2.0
1,683,367 + -1.8
1,683,367 + -1.1
1,683,367 + -2.2
1,683,367 + -2.5
1,683,367 + -1.2
1,683,367 + -3.1
1,683,368 - +0.0
1,683,368 - +0.1
1,683,368 - -0.8
1,683,368 - +0.0
1,683,368 - +1.0
1,683,368 - -0.3
1,683,368 - -1.6
1,683,368 - -0.4
1,683,422 + +0.5
1,683,559 - Ga0059261_1606 0.23 +1.2
1,683,610 - Ga0059261_1606 0.34 +0.7
1,683,610 - Ga0059261_1606 0.34 +0.3
1,683,726 + Ga0059261_1606 0.60 -0.5
1,683,726 + Ga0059261_1606 0.60 -1.1
1,683,726 + Ga0059261_1606 0.60 +0.2
1,683,726 + Ga0059261_1606 0.60 +0.3
1,683,726 + Ga0059261_1606 0.60 -0.6
1,683,726 + Ga0059261_1606 0.60 +0.7
1,683,726 + Ga0059261_1606 0.60 -1.8
1,683,726 + Ga0059261_1606 0.60 -0.0
1,683,726 + Ga0059261_1606 0.60 +0.4
1,683,727 - Ga0059261_1606 0.60 +0.1
1,683,727 - Ga0059261_1606 0.60 -0.0
1,683,727 - Ga0059261_1606 0.60 +0.7
1,683,855 + Ga0059261_1606 0.89 +0.2
1,683,855 + Ga0059261_1606 0.89 -1.0
1,683,855 + Ga0059261_1606 0.89 -0.7
1,683,855 + Ga0059261_1606 0.89 -0.2
1,683,855 + Ga0059261_1606 0.89 +1.2
1,683,856 - Ga0059261_1606 0.89 +0.4
1,683,973 + +0.2
1,683,973 + +0.5
1,683,980 + +0.2
1,684,011 + Ga0059261_1607 0.14 +0.5
1,684,011 + Ga0059261_1607 0.14 +0.3
1,684,012 - Ga0059261_1607 0.14 +0.7
1,684,012 - Ga0059261_1607 0.14 +0.1
1,684,063 + Ga0059261_1607 0.20 +0.2
1,684,063 + Ga0059261_1607 0.20 -1.0
1,684,063 + Ga0059261_1607 0.20 +0.5
1,684,064 - Ga0059261_1607 0.20 -0.1
1,684,064 - Ga0059261_1607 0.20 +0.2
1,684,064 - Ga0059261_1607 0.20 -0.1
1,684,064 - Ga0059261_1607 0.20 -0.3
1,684,064 - Ga0059261_1607 0.20 +0.4
1,684,064 - Ga0059261_1607 0.20 -0.1
1,684,064 - Ga0059261_1607 0.20 +0.4
1,684,136 + Ga0059261_1607 0.29 -0.3
1,684,136 + Ga0059261_1607 0.29 +0.1
1,684,136 + Ga0059261_1607 0.29 +0.0
1,684,137 - Ga0059261_1607 0.29 +0.2
1,684,137 - Ga0059261_1607 0.29 +0.4
1,684,137 - Ga0059261_1607 0.29 -0.1
1,684,137 - Ga0059261_1607 0.29 -0.7
1,684,137 - Ga0059261_1607 0.29 -0.2
1,684,137 - Ga0059261_1607 0.29 +1.1
1,684,137 - Ga0059261_1607 0.29 -0.0
1,684,137 - Ga0059261_1607 0.29 +0.1
1,684,220 + Ga0059261_1607 0.39 +0.2
1,684,220 + Ga0059261_1607 0.39 +0.0
1,684,220 + Ga0059261_1607 0.39 +0.6
1,684,220 + Ga0059261_1607 0.39 +0.5
1,684,221 - +0.8
1,684,221 - Ga0059261_1607 0.39 -0.4
1,684,221 - Ga0059261_1607 0.39 -0.5
1,684,221 - Ga0059261_1607 0.39 -0.2
1,684,221 - Ga0059261_1607 0.39 -0.8
1,684,221 - Ga0059261_1607 0.39 -0.1
1,684,221 - Ga0059261_1607 0.39 +0.2
1,684,221 - Ga0059261_1607 0.39 +0.2
1,684,292 + Ga0059261_1607 0.48 +0.0
1,684,292 + Ga0059261_1607 0.48 +0.4
1,684,292 + Ga0059261_1607 0.48 +0.1
1,684,292 + Ga0059261_1607 0.48 -0.5
1,684,292 + Ga0059261_1607 0.48 -0.2
1,684,292 + Ga0059261_1607 0.48 -0.4
1,684,292 + Ga0059261_1607 0.48 +0.3
1,684,292 + Ga0059261_1607 0.48 -0.4
1,684,292 + Ga0059261_1607 0.48 +1.3
1,684,293 - Ga0059261_1607 0.48 +1.0
1,684,293 - Ga0059261_1607 0.48 +0.3
1,684,293 - Ga0059261_1607 0.48 -0.8
1,684,293 - Ga0059261_1607 0.48 -1.5
1,684,293 - Ga0059261_1607 0.48 -0.2
1,684,293 - Ga0059261_1607 0.48 +0.7
1,684,293 - Ga0059261_1607 0.48 -0.4
1,684,293 - Ga0059261_1607 0.48 +0.5
1,684,293 - Ga0059261_1607 0.48 -0.5
1,684,293 - Ga0059261_1607 0.48 -0.7
1,684,339 - Ga0059261_1607 0.53 +0.2

Or see this region's nucleotide sequence