Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1498

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1496 and Ga0059261_1497 overlap by 4 nucleotidesGa0059261_1497 and Ga0059261_1498 are separated by 1 nucleotidesGa0059261_1498 and Ga0059261_1499 overlap by 8 nucleotidesGa0059261_1499 and Ga0059261_1500 overlap by 8 nucleotides Ga0059261_1496: Ga0059261_1496 - uroporphyrin-III C-methyltransferase, at 1,581,075 to 1,581,872 _1496 Ga0059261_1497: Ga0059261_1497 - required for sulfate utilization, putative electron source for sulfite reductase CysI (from data), at 1,581,869 to 1,582,165 _1497 Ga0059261_1498: Ga0059261_1498 - Sulfite reductase, beta subunit (hemoprotein), at 1,582,167 to 1,583,798 _1498 Ga0059261_1499: Ga0059261_1499 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 1,583,791 to 1,584,219 _1499 Ga0059261_1500: Ga0059261_1500 - phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8), at 1,584,212 to 1,584,979 _1500 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.072 kb on + strand, within Ga0059261_1497at 1582.072 kb on + strand, within Ga0059261_1497at 1582.072 kb on + strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.176 kb on + strandat 1582.176 kb on + strandat 1582.176 kb on + strandat 1582.176 kb on + strandat 1582.185 kb on + strandat 1582.186 kb on - strandat 1582.186 kb on - strandat 1582.186 kb on - strandat 1582.302 kb on + strandat 1582.303 kb on - strandat 1582.303 kb on - strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.321 kb on - strandat 1582.321 kb on - strandat 1582.321 kb on - strandat 1582.321 kb on - strandat 1582.398 kb on + strand, within Ga0059261_1498at 1582.398 kb on + strand, within Ga0059261_1498at 1582.399 kb on - strand, within Ga0059261_1498at 1582.399 kb on - strand, within Ga0059261_1498at 1582.411 kb on - strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.444 kb on - strand, within Ga0059261_1498at 1582.444 kb on - strand, within Ga0059261_1498at 1582.444 kb on - strand, within Ga0059261_1498at 1582.445 kb on + strand, within Ga0059261_1498at 1582.445 kb on + strand, within Ga0059261_1498at 1582.446 kb on - strand, within Ga0059261_1498at 1582.446 kb on - strandat 1582.558 kb on - strand, within Ga0059261_1498at 1582.647 kb on + strand, within Ga0059261_1498at 1582.648 kb on - strand, within Ga0059261_1498at 1582.648 kb on - strand, within Ga0059261_1498at 1582.648 kb on - strandat 1582.767 kb on + strand, within Ga0059261_1498at 1582.767 kb on + strand, within Ga0059261_1498at 1582.768 kb on - strand, within Ga0059261_1498at 1582.848 kb on + strand, within Ga0059261_1498at 1582.848 kb on + strandat 1582.848 kb on + strand, within Ga0059261_1498at 1582.848 kb on + strand, within Ga0059261_1498at 1582.849 kb on - strand, within Ga0059261_1498at 1582.849 kb on - strand, within Ga0059261_1498at 1582.850 kb on + strandat 1582.850 kb on + strand, within Ga0059261_1498at 1582.872 kb on + strand, within Ga0059261_1498at 1582.872 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.950 kb on + strand, within Ga0059261_1498at 1582.950 kb on + strand, within Ga0059261_1498at 1582.951 kb on - strand, within Ga0059261_1498at 1583.148 kb on + strand, within Ga0059261_1498at 1583.316 kb on + strand, within Ga0059261_1498at 1583.406 kb on + strand, within Ga0059261_1498at 1583.406 kb on + strand, within Ga0059261_1498at 1583.406 kb on + strand, within Ga0059261_1498at 1583.579 kb on + strand, within Ga0059261_1498at 1583.580 kb on - strand, within Ga0059261_1498at 1583.595 kb on + strand, within Ga0059261_1498at 1583.595 kb on + strandat 1583.596 kb on - strand, within Ga0059261_1498at 1583.709 kb on + strandat 1583.748 kb on - strandat 1583.748 kb on - strandat 1583.751 kb on + strandat 1583.752 kb on - strandat 1583.752 kb on - strandat 1583.752 kb on - strandat 1583.752 kb on - strandat 1583.790 kb on + strandat 1583.790 kb on + strandat 1583.790 kb on + strandat 1583.790 kb on + strandat 1583.791 kb on - strandat 1584.023 kb on - strand, within Ga0059261_1499at 1584.154 kb on + strand, within Ga0059261_1499at 1584.154 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.167 kb on - strand, within Ga0059261_1499at 1584.167 kb on - strand, within Ga0059261_1499at 1584.587 kb on + strand, within Ga0059261_1500at 1584.587 kb on + strand, within Ga0059261_1500at 1584.587 kb on + strand, within Ga0059261_1500at 1584.587 kb on + strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.785 kb on + strand, within Ga0059261_1500at 1584.786 kb on - strand, within Ga0059261_1500at 1584.786 kb on - strandat 1584.786 kb on - strand, within Ga0059261_1500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
1,581,597 + Ga0059261_1496 0.65 -0.5
1,581,597 + Ga0059261_1496 0.65 -3.1
1,581,597 + Ga0059261_1496 0.65 -1.8
1,581,597 + Ga0059261_1496 0.65 -1.1
1,581,597 + Ga0059261_1496 0.65 -3.7
1,581,598 - Ga0059261_1496 0.66 -2.3
1,581,598 - Ga0059261_1496 0.66 -0.8
1,581,598 - Ga0059261_1496 0.66 -2.7
1,581,598 - Ga0059261_1496 0.66 +0.2
1,581,598 - Ga0059261_1496 0.66 -2.8
1,582,025 + Ga0059261_1497 0.53 -1.9
1,582,025 + Ga0059261_1497 0.53 -1.0
1,582,025 + Ga0059261_1497 0.53 -2.8
1,582,025 + Ga0059261_1497 0.53 -2.1
1,582,025 + Ga0059261_1497 0.53 -2.4
1,582,026 - Ga0059261_1497 0.53 -0.3
1,582,026 - Ga0059261_1497 0.53 -1.6
1,582,026 - Ga0059261_1497 0.53 -1.7
1,582,026 - Ga0059261_1497 0.53 -1.8
1,582,072 + Ga0059261_1497 0.68 -2.3
1,582,072 + Ga0059261_1497 0.68 -3.5
1,582,072 + Ga0059261_1497 0.68 -2.8
1,582,073 - Ga0059261_1497 0.69 -1.9
1,582,073 - Ga0059261_1497 0.69 -0.5
1,582,073 - Ga0059261_1497 0.69 -1.7
1,582,073 - Ga0059261_1497 0.69 -2.8
1,582,073 - Ga0059261_1497 0.69 -2.5
1,582,176 + -1.5
1,582,176 + -0.2
1,582,176 + -2.6
1,582,176 + -2.0
1,582,185 + -2.5
1,582,186 - -2.9
1,582,186 - -2.3
1,582,186 - -2.9
1,582,302 + -1.6
1,582,303 - -2.1
1,582,303 - +2.2
1,582,320 + -1.7
1,582,320 + +0.2
1,582,320 + -3.9
1,582,320 + -1.8
1,582,320 + -2.7
1,582,320 + +0.6
1,582,320 + -1.2
1,582,320 + -1.4
1,582,320 + -1.0
1,582,320 + -2.0
1,582,321 - -0.8
1,582,321 - -1.2
1,582,321 - -1.1
1,582,321 - -0.8
1,582,398 + Ga0059261_1498 0.14 -2.4
1,582,398 + Ga0059261_1498 0.14 -1.4
1,582,399 - Ga0059261_1498 0.14 -2.3
1,582,399 - Ga0059261_1498 0.14 -2.6
1,582,411 - Ga0059261_1498 0.15 -1.9
1,582,443 + Ga0059261_1498 0.17 -2.5
1,582,443 + Ga0059261_1498 0.17 -1.2
1,582,443 + Ga0059261_1498 0.17 -1.2
1,582,443 + Ga0059261_1498 0.17 -2.5
1,582,444 - Ga0059261_1498 0.17 -3.5
1,582,444 - Ga0059261_1498 0.17 -1.4
1,582,444 - Ga0059261_1498 0.17 -1.9
1,582,445 + Ga0059261_1498 0.17 -4.9
1,582,445 + Ga0059261_1498 0.17 -2.2
1,582,446 - Ga0059261_1498 0.17 -2.3
1,582,446 - -1.4
1,582,558 - Ga0059261_1498 0.24 -2.6
1,582,647 + Ga0059261_1498 0.29 -1.3
1,582,648 - Ga0059261_1498 0.29 -1.0
1,582,648 - Ga0059261_1498 0.29 -1.4
1,582,648 - -0.2
1,582,767 + Ga0059261_1498 0.37 -3.1
1,582,767 + Ga0059261_1498 0.37 -2.4
1,582,768 - Ga0059261_1498 0.37 -0.8
1,582,848 + Ga0059261_1498 0.42 -2.9
1,582,848 + -0.2
1,582,848 + Ga0059261_1498 0.42 -0.5
1,582,848 + Ga0059261_1498 0.42 -2.2
1,582,849 - Ga0059261_1498 0.42 -2.0
1,582,849 - Ga0059261_1498 0.42 -0.5
1,582,850 + -0.8
1,582,850 + Ga0059261_1498 0.42 -0.8
1,582,872 + Ga0059261_1498 0.43 -3.5
1,582,872 + Ga0059261_1498 0.43 -3.3
1,582,898 + Ga0059261_1498 0.45 -1.4
1,582,898 + Ga0059261_1498 0.45 -2.7
1,582,898 + Ga0059261_1498 0.45 -2.8
1,582,898 + Ga0059261_1498 0.45 -2.4
1,582,899 - Ga0059261_1498 0.45 -1.6
1,582,899 - Ga0059261_1498 0.45 -1.7
1,582,899 - Ga0059261_1498 0.45 -2.0
1,582,899 - Ga0059261_1498 0.45 -4.2
1,582,899 - Ga0059261_1498 0.45 -2.0
1,582,902 + Ga0059261_1498 0.45 -3.2
1,582,902 + Ga0059261_1498 0.45 -1.4
1,582,902 + Ga0059261_1498 0.45 -2.0
1,582,902 + Ga0059261_1498 0.45 -2.8
1,582,902 + Ga0059261_1498 0.45 -2.8
1,582,902 + Ga0059261_1498 0.45 -1.4
1,582,902 + Ga0059261_1498 0.45 -0.2
1,582,902 + Ga0059261_1498 0.45 -1.5
1,582,902 + Ga0059261_1498 0.45 -1.5
1,582,903 - Ga0059261_1498 0.45 +0.2
1,582,903 - Ga0059261_1498 0.45 -2.6
1,582,903 - Ga0059261_1498 0.45 -1.4
1,582,903 - Ga0059261_1498 0.45 +0.0
1,582,950 + Ga0059261_1498 0.48 -2.6
1,582,950 + Ga0059261_1498 0.48 -2.4
1,582,951 - Ga0059261_1498 0.48 -0.5
1,583,148 + Ga0059261_1498 0.60 -2.7
1,583,316 + Ga0059261_1498 0.70 -1.5
1,583,406 + Ga0059261_1498 0.76 -2.9
1,583,406 + Ga0059261_1498 0.76 -3.9
1,583,406 + Ga0059261_1498 0.76 -1.8
1,583,579 + Ga0059261_1498 0.87 -1.5
1,583,580 - Ga0059261_1498 0.87 -2.9
1,583,595 + Ga0059261_1498 0.88 -3.9
1,583,595 + +0.2
1,583,596 - Ga0059261_1498 0.88 -1.8
1,583,709 + -2.4
1,583,748 - -1.8
1,583,748 - -0.5
1,583,751 + -2.9
1,583,752 - -1.6
1,583,752 - -2.9
1,583,752 - +0.2
1,583,752 - -0.8
1,583,790 + -0.4
1,583,790 + -1.2
1,583,790 + -2.8
1,583,790 + -4.0
1,583,791 - -1.8
1,584,023 - Ga0059261_1499 0.54 -2.1
1,584,154 + Ga0059261_1499 0.85 -1.5
1,584,154 + Ga0059261_1499 0.85 -0.8
1,584,166 + Ga0059261_1499 0.87 -3.5
1,584,166 + Ga0059261_1499 0.87 -1.0
1,584,166 + Ga0059261_1499 0.87 -4.0
1,584,166 + Ga0059261_1499 0.87 -2.5
1,584,166 + Ga0059261_1499 0.87 -2.5
1,584,166 + Ga0059261_1499 0.87 -1.4
1,584,167 - Ga0059261_1499 0.88 -2.2
1,584,167 - Ga0059261_1499 0.88 -1.7
1,584,587 + Ga0059261_1500 0.49 -1.2
1,584,587 + Ga0059261_1500 0.49 -1.2
1,584,587 + Ga0059261_1500 0.49 -0.8
1,584,587 + Ga0059261_1500 0.49 -2.2
1,584,588 - Ga0059261_1500 0.49 -2.6
1,584,588 - Ga0059261_1500 0.49 -0.5
1,584,588 - Ga0059261_1500 0.49 -2.8
1,584,588 - Ga0059261_1500 0.49 -2.4
1,584,785 + Ga0059261_1500 0.75 -3.1
1,584,786 - Ga0059261_1500 0.75 -1.6
1,584,786 - +1.2
1,584,786 - Ga0059261_1500 0.75 -2.6

Or see this region's nucleotide sequence