Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1044

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1042 and Ga0059261_1043 are separated by 30 nucleotidesGa0059261_1043 and Ga0059261_1044 are separated by 52 nucleotidesGa0059261_1044 and Ga0059261_1045 overlap by 1 nucleotidesGa0059261_1045 and Ga0059261_1046 overlap by 4 nucleotidesGa0059261_1046 and Ga0059261_1047 overlap by 4 nucleotides Ga0059261_1042: Ga0059261_1042 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,077,580 to 1,078,353 _1042 Ga0059261_1043: Ga0059261_1043 - Uncharacterized protein conserved in bacteria, at 1,078,384 to 1,078,953 _1043 Ga0059261_1044: Ga0059261_1044 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 1,079,006 to 1,079,593 _1044 Ga0059261_1045: Ga0059261_1045 - Uncharacterized protein conserved in bacteria, at 1,079,593 to 1,079,877 _1045 Ga0059261_1046: Ga0059261_1046 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,079,874 to 1,080,473 _1046 Ga0059261_1047: Ga0059261_1047 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 1,080,470 to 1,081,198 _1047 Position (kb) 1079 1080Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1078.013 kb on + strand, within Ga0059261_1042at 1078.013 kb on + strand, within Ga0059261_1042at 1078.014 kb on - strand, within Ga0059261_1042at 1078.014 kb on - strand, within Ga0059261_1042at 1078.014 kb on - strand, within Ga0059261_1042at 1078.033 kb on + strand, within Ga0059261_1042at 1078.033 kb on + strand, within Ga0059261_1042at 1078.033 kb on + strand, within Ga0059261_1042at 1078.034 kb on - strand, within Ga0059261_1042at 1078.034 kb on - strand, within Ga0059261_1042at 1078.034 kb on - strand, within Ga0059261_1042at 1078.034 kb on - strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.045 kb on + strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.046 kb on - strand, within Ga0059261_1042at 1078.054 kb on + strand, within Ga0059261_1042at 1078.054 kb on + strand, within Ga0059261_1042at 1078.054 kb on + strand, within Ga0059261_1042at 1078.054 kb on + strand, within Ga0059261_1042at 1078.054 kb on + strand, within Ga0059261_1042at 1078.055 kb on - strand, within Ga0059261_1042at 1078.055 kb on - strand, within Ga0059261_1042at 1078.055 kb on - strand, within Ga0059261_1042at 1078.055 kb on - strand, within Ga0059261_1042at 1078.055 kb on - strand, within Ga0059261_1042at 1078.055 kb on - strand, within Ga0059261_1042at 1078.171 kb on + strand, within Ga0059261_1042at 1078.171 kb on + strand, within Ga0059261_1042at 1078.171 kb on + strand, within Ga0059261_1042at 1078.172 kb on - strand, within Ga0059261_1042at 1078.172 kb on - strand, within Ga0059261_1042at 1078.201 kb on + strand, within Ga0059261_1042at 1078.201 kb on + strand, within Ga0059261_1042at 1078.202 kb on - strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.254 kb on + strand, within Ga0059261_1042at 1078.255 kb on - strand, within Ga0059261_1042at 1078.255 kb on - strand, within Ga0059261_1042at 1078.255 kb on - strand, within Ga0059261_1042at 1078.255 kb on - strand, within Ga0059261_1042at 1078.255 kb on - strand, within Ga0059261_1042at 1078.263 kb on + strand, within Ga0059261_1042at 1078.264 kb on - strand, within Ga0059261_1042at 1078.339 kb on + strandat 1078.339 kb on + strandat 1078.340 kb on - strandat 1078.340 kb on - strandat 1078.385 kb on + strandat 1078.386 kb on - strandat 1078.386 kb on - strandat 1078.386 kb on - strandat 1078.739 kb on + strand, within Ga0059261_1043at 1078.739 kb on + strand, within Ga0059261_1043at 1078.739 kb on + strand, within Ga0059261_1043at 1078.739 kb on + strand, within Ga0059261_1043at 1078.739 kb on + strand, within Ga0059261_1043at 1078.740 kb on - strand, within Ga0059261_1043at 1078.882 kb on + strand, within Ga0059261_1043at 1078.882 kb on + strand, within Ga0059261_1043at 1078.882 kb on + strand, within Ga0059261_1043at 1078.883 kb on - strand, within Ga0059261_1043at 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.958 kb on + strandat 1078.959 kb on - strandat 1078.959 kb on - strandat 1078.959 kb on - strandat 1078.959 kb on - strandat 1078.994 kb on + strandat 1078.994 kb on + strandat 1079.084 kb on + strand, within Ga0059261_1044at 1079.084 kb on + strand, within Ga0059261_1044at 1079.085 kb on - strand, within Ga0059261_1044at 1079.085 kb on - strand, within Ga0059261_1044at 1079.085 kb on - strand, within Ga0059261_1044at 1079.085 kb on - strand, within Ga0059261_1044at 1079.085 kb on - strand, within Ga0059261_1044at 1079.200 kb on + strand, within Ga0059261_1044at 1079.200 kb on + strand, within Ga0059261_1044at 1079.200 kb on + strand, within Ga0059261_1044at 1079.200 kb on + strand, within Ga0059261_1044at 1079.201 kb on - strand, within Ga0059261_1044at 1079.201 kb on - strand, within Ga0059261_1044at 1079.201 kb on - strand, within Ga0059261_1044at 1079.201 kb on - strand, within Ga0059261_1044at 1079.201 kb on - strand, within Ga0059261_1044at 1079.201 kb on - strandat 1079.201 kb on - strand, within Ga0059261_1044at 1079.201 kb on - strand, within Ga0059261_1044at 1079.212 kb on + strand, within Ga0059261_1044at 1079.345 kb on + strand, within Ga0059261_1044at 1079.345 kb on + strand, within Ga0059261_1044at 1079.345 kb on + strandat 1079.345 kb on + strand, within Ga0059261_1044at 1079.345 kb on + strand, within Ga0059261_1044at 1079.346 kb on - strand, within Ga0059261_1044at 1079.346 kb on - strand, within Ga0059261_1044at 1079.346 kb on - strand, within Ga0059261_1044at 1079.468 kb on + strand, within Ga0059261_1044at 1079.468 kb on + strand, within Ga0059261_1044at 1079.468 kb on + strand, within Ga0059261_1044at 1079.468 kb on + strand, within Ga0059261_1044at 1079.468 kb on + strand, within Ga0059261_1044at 1079.469 kb on - strand, within Ga0059261_1044at 1079.469 kb on - strand, within Ga0059261_1044at 1079.469 kb on - strand, within Ga0059261_1044at 1079.469 kb on - strand, within Ga0059261_1044at 1079.469 kb on - strand, within Ga0059261_1044at 1079.469 kb on - strand, within Ga0059261_1044at 1079.488 kb on + strand, within Ga0059261_1044at 1079.488 kb on + strand, within Ga0059261_1044at 1079.489 kb on - strand, within Ga0059261_1044at 1079.489 kb on - strand, within Ga0059261_1044at 1079.489 kb on - strand, within Ga0059261_1044at 1079.614 kb on + strandat 1079.614 kb on + strandat 1079.614 kb on + strandat 1079.614 kb on + strandat 1079.615 kb on - strandat 1079.615 kb on - strandat 1079.815 kb on + strand, within Ga0059261_1045at 1079.895 kb on + strandat 1079.896 kb on - strandat 1080.236 kb on + strand, within Ga0059261_1046at 1080.237 kb on - strand, within Ga0059261_1046at 1080.297 kb on + strand, within Ga0059261_1046at 1080.297 kb on + strand, within Ga0059261_1046at 1080.297 kb on + strand, within Ga0059261_1046at 1080.297 kb on + strand, within Ga0059261_1046at 1080.298 kb on - strand, within Ga0059261_1046at 1080.298 kb on - strand, within Ga0059261_1046at 1080.318 kb on + strand, within Ga0059261_1046at 1080.318 kb on + strand, within Ga0059261_1046at 1080.318 kb on + strand, within Ga0059261_1046at 1080.318 kb on + strand, within Ga0059261_1046at 1080.319 kb on - strand, within Ga0059261_1046at 1080.319 kb on - strand, within Ga0059261_1046at 1080.319 kb on - strand, within Ga0059261_1046at 1080.319 kb on - strand, within Ga0059261_1046at 1080.320 kb on + strand, within Ga0059261_1046at 1080.320 kb on + strand, within Ga0059261_1046at 1080.321 kb on - strand, within Ga0059261_1046at 1080.321 kb on - strand, within Ga0059261_1046at 1080.321 kb on - strand, within Ga0059261_1046at 1080.429 kb on + strandat 1080.532 kb on + strandat 1080.532 kb on + strandat 1080.533 kb on - strandat 1080.533 kb on - strandat 1080.533 kb on - strandat 1080.533 kb on - strandat 1080.533 kb on - strandat 1080.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,078,013 + Ga0059261_1042 0.56 +1.4
1,078,013 + Ga0059261_1042 0.56 -0.3
1,078,014 - Ga0059261_1042 0.56 -0.5
1,078,014 - Ga0059261_1042 0.56 -0.6
1,078,014 - Ga0059261_1042 0.56 +0.7
1,078,033 + Ga0059261_1042 0.59 -0.1
1,078,033 + Ga0059261_1042 0.59 +0.5
1,078,033 + Ga0059261_1042 0.59 -0.2
1,078,034 - Ga0059261_1042 0.59 -0.3
1,078,034 - Ga0059261_1042 0.59 -0.8
1,078,034 - Ga0059261_1042 0.59 +0.5
1,078,034 - Ga0059261_1042 0.59 -0.3
1,078,045 + Ga0059261_1042 0.60 -0.3
1,078,045 + Ga0059261_1042 0.60 +0.1
1,078,045 + Ga0059261_1042 0.60 -2.9
1,078,045 + Ga0059261_1042 0.60 -0.1
1,078,045 + Ga0059261_1042 0.60 +0.3
1,078,045 + Ga0059261_1042 0.60 +0.2
1,078,045 + Ga0059261_1042 0.60 +0.3
1,078,045 + Ga0059261_1042 0.60 +0.2
1,078,045 + Ga0059261_1042 0.60 -0.7
1,078,045 + Ga0059261_1042 0.60 +0.1
1,078,045 + Ga0059261_1042 0.60 +0.1
1,078,046 - Ga0059261_1042 0.60 +0.8
1,078,046 - Ga0059261_1042 0.60 +0.2
1,078,046 - Ga0059261_1042 0.60 -0.8
1,078,046 - Ga0059261_1042 0.60 +0.2
1,078,046 - Ga0059261_1042 0.60 +0.3
1,078,046 - Ga0059261_1042 0.60 +0.7
1,078,046 - Ga0059261_1042 0.60 -0.4
1,078,046 - Ga0059261_1042 0.60 -0.3
1,078,046 - Ga0059261_1042 0.60 +0.3
1,078,046 - Ga0059261_1042 0.60 -0.1
1,078,046 - Ga0059261_1042 0.60 -0.2
1,078,046 - Ga0059261_1042 0.60 +0.3
1,078,046 - Ga0059261_1042 0.60 -0.1
1,078,046 - Ga0059261_1042 0.60 +0.3
1,078,046 - Ga0059261_1042 0.60 -0.1
1,078,046 - Ga0059261_1042 0.60 -0.7
1,078,046 - Ga0059261_1042 0.60 -0.0
1,078,054 + Ga0059261_1042 0.61 +0.5
1,078,054 + Ga0059261_1042 0.61 -2.0
1,078,054 + Ga0059261_1042 0.61 -0.7
1,078,054 + Ga0059261_1042 0.61 +0.6
1,078,054 + Ga0059261_1042 0.61 +0.5
1,078,055 - Ga0059261_1042 0.61 -0.9
1,078,055 - Ga0059261_1042 0.61 +0.3
1,078,055 - Ga0059261_1042 0.61 +0.7
1,078,055 - Ga0059261_1042 0.61 +0.4
1,078,055 - Ga0059261_1042 0.61 -0.4
1,078,055 - Ga0059261_1042 0.61 +0.2
1,078,171 + Ga0059261_1042 0.76 +0.1
1,078,171 + Ga0059261_1042 0.76 -0.7
1,078,171 + Ga0059261_1042 0.76 -0.8
1,078,172 - Ga0059261_1042 0.76 +0.2
1,078,172 - Ga0059261_1042 0.76 -0.3
1,078,201 + Ga0059261_1042 0.80 -0.4
1,078,201 + Ga0059261_1042 0.80 +0.5
1,078,202 - Ga0059261_1042 0.80 -0.8
1,078,254 + Ga0059261_1042 0.87 +0.2
1,078,254 + Ga0059261_1042 0.87 +0.4
1,078,254 + Ga0059261_1042 0.87 +0.3
1,078,254 + Ga0059261_1042 0.87 +0.4
1,078,254 + Ga0059261_1042 0.87 -1.1
1,078,254 + Ga0059261_1042 0.87 +0.0
1,078,254 + Ga0059261_1042 0.87 +0.7
1,078,255 - Ga0059261_1042 0.87 -0.7
1,078,255 - Ga0059261_1042 0.87 +0.2
1,078,255 - Ga0059261_1042 0.87 -0.8
1,078,255 - Ga0059261_1042 0.87 -0.3
1,078,255 - Ga0059261_1042 0.87 +0.0
1,078,263 + Ga0059261_1042 0.88 -0.0
1,078,264 - Ga0059261_1042 0.88 -0.4
1,078,339 + +0.3
1,078,339 + -1.7
1,078,340 - -2.7
1,078,340 - -0.2
1,078,385 + +0.5
1,078,386 - -0.1
1,078,386 - -0.2
1,078,386 - -0.6
1,078,739 + Ga0059261_1043 0.62 +0.1
1,078,739 + Ga0059261_1043 0.62 -0.4
1,078,739 + Ga0059261_1043 0.62 -0.1
1,078,739 + Ga0059261_1043 0.62 -0.7
1,078,739 + Ga0059261_1043 0.62 +0.3
1,078,740 - Ga0059261_1043 0.62 -0.3
1,078,882 + Ga0059261_1043 0.87 +0.3
1,078,882 + Ga0059261_1043 0.87 -0.1
1,078,882 + Ga0059261_1043 0.87 -0.1
1,078,883 - Ga0059261_1043 0.88 +0.7
1,078,958 + +0.6
1,078,958 + +1.2
1,078,958 + -0.4
1,078,958 + -0.8
1,078,958 + -0.4
1,078,958 + -0.2
1,078,958 + +0.3
1,078,958 + -0.3
1,078,958 + +0.7
1,078,959 - -0.2
1,078,959 - +0.2
1,078,959 - -0.2
1,078,959 - -1.1
1,078,994 + -0.3
1,078,994 + +0.4
1,079,084 + Ga0059261_1044 0.13 -3.5
1,079,084 + Ga0059261_1044 0.13 -3.2
1,079,085 - Ga0059261_1044 0.13 -3.0
1,079,085 - Ga0059261_1044 0.13 -2.2
1,079,085 - Ga0059261_1044 0.13 -4.4
1,079,085 - Ga0059261_1044 0.13 -4.7
1,079,085 - Ga0059261_1044 0.13 -2.8
1,079,200 + Ga0059261_1044 0.33 -3.1
1,079,200 + Ga0059261_1044 0.33 -2.9
1,079,200 + Ga0059261_1044 0.33 -2.0
1,079,200 + Ga0059261_1044 0.33 -1.8
1,079,201 - Ga0059261_1044 0.33 -3.1
1,079,201 - Ga0059261_1044 0.33 -3.4
1,079,201 - Ga0059261_1044 0.33 -4.2
1,079,201 - Ga0059261_1044 0.33 -2.1
1,079,201 - Ga0059261_1044 0.33 -3.0
1,079,201 - -0.3
1,079,201 - Ga0059261_1044 0.33 -2.6
1,079,201 - Ga0059261_1044 0.33 -2.4
1,079,212 + Ga0059261_1044 0.35 -1.7
1,079,345 + Ga0059261_1044 0.58 -0.6
1,079,345 + Ga0059261_1044 0.58 -2.6
1,079,345 + -0.3
1,079,345 + Ga0059261_1044 0.58 -2.6
1,079,345 + Ga0059261_1044 0.58 -1.8
1,079,346 - Ga0059261_1044 0.58 -1.4
1,079,346 - Ga0059261_1044 0.58 -2.9
1,079,346 - Ga0059261_1044 0.58 -2.1
1,079,468 + Ga0059261_1044 0.79 -1.1
1,079,468 + Ga0059261_1044 0.79 -2.1
1,079,468 + Ga0059261_1044 0.79 -1.4
1,079,468 + Ga0059261_1044 0.79 -2.7
1,079,468 + Ga0059261_1044 0.79 -2.6
1,079,469 - Ga0059261_1044 0.79 -4.8
1,079,469 - Ga0059261_1044 0.79 -4.1
1,079,469 - Ga0059261_1044 0.79 -4.1
1,079,469 - Ga0059261_1044 0.79 -0.8
1,079,469 - Ga0059261_1044 0.79 -1.8
1,079,469 - Ga0059261_1044 0.79 -3.9
1,079,488 + Ga0059261_1044 0.82 -3.4
1,079,488 + Ga0059261_1044 0.82 -2.4
1,079,489 - Ga0059261_1044 0.82 -1.4
1,079,489 - Ga0059261_1044 0.82 -2.3
1,079,489 - Ga0059261_1044 0.82 -2.8
1,079,614 + -1.0
1,079,614 + -1.4
1,079,614 + -0.7
1,079,614 + -0.8
1,079,615 - -4.4
1,079,615 - -2.0
1,079,815 + Ga0059261_1045 0.78 -2.0
1,079,895 + -2.5
1,079,896 - -3.4
1,080,236 + Ga0059261_1046 0.60 -3.2
1,080,237 - Ga0059261_1046 0.60 -2.6
1,080,297 + Ga0059261_1046 0.70 -3.4
1,080,297 + Ga0059261_1046 0.70 -2.5
1,080,297 + Ga0059261_1046 0.70 -1.8
1,080,297 + Ga0059261_1046 0.70 -1.8
1,080,298 - Ga0059261_1046 0.71 -3.8
1,080,298 - Ga0059261_1046 0.71 -3.6
1,080,318 + Ga0059261_1046 0.74 -3.5
1,080,318 + Ga0059261_1046 0.74 -3.7
1,080,318 + Ga0059261_1046 0.74 -3.3
1,080,318 + Ga0059261_1046 0.74 -1.7
1,080,319 - Ga0059261_1046 0.74 -2.7
1,080,319 - Ga0059261_1046 0.74 -1.8
1,080,319 - Ga0059261_1046 0.74 -2.7
1,080,319 - Ga0059261_1046 0.74 -2.1
1,080,320 + Ga0059261_1046 0.74 -0.6
1,080,320 + Ga0059261_1046 0.74 -2.0
1,080,321 - Ga0059261_1046 0.74 -3.9
1,080,321 - Ga0059261_1046 0.74 -3.7
1,080,321 - Ga0059261_1046 0.74 -2.7
1,080,429 + -3.1
1,080,532 + -1.7
1,080,532 + -2.6
1,080,533 - -3.4
1,080,533 - -0.6
1,080,533 - -1.6
1,080,533 - -2.3
1,080,533 - -3.0
1,080,533 - -3.2

Or see this region's nucleotide sequence