Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1042 and Ga0059261_1043 are separated by 30 nucleotides Ga0059261_1043 and Ga0059261_1044 are separated by 52 nucleotides Ga0059261_1044 and Ga0059261_1045 overlap by 1 nucleotides Ga0059261_1045 and Ga0059261_1046 overlap by 4 nucleotides Ga0059261_1046 and Ga0059261_1047 overlap by 4 nucleotides
Ga0059261_1042: Ga0059261_1042 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,077,580 to 1,078,353
_1042
Ga0059261_1043: Ga0059261_1043 - Uncharacterized protein conserved in bacteria, at 1,078,384 to 1,078,953
_1043
Ga0059261_1044: Ga0059261_1044 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 1,079,006 to 1,079,593
_1044
Ga0059261_1045: Ga0059261_1045 - Uncharacterized protein conserved in bacteria, at 1,079,593 to 1,079,877
_1045
Ga0059261_1046: Ga0059261_1046 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,079,874 to 1,080,473
_1046
Ga0059261_1047: Ga0059261_1047 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 1,080,470 to 1,081,198
_1047
Position (kb)
1079
1080 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1078.013 kb on + strand, within Ga0059261_1042 at 1078.013 kb on + strand, within Ga0059261_1042 at 1078.014 kb on - strand, within Ga0059261_1042 at 1078.014 kb on - strand, within Ga0059261_1042 at 1078.014 kb on - strand, within Ga0059261_1042 at 1078.033 kb on + strand, within Ga0059261_1042 at 1078.033 kb on + strand, within Ga0059261_1042 at 1078.033 kb on + strand, within Ga0059261_1042 at 1078.034 kb on - strand, within Ga0059261_1042 at 1078.034 kb on - strand, within Ga0059261_1042 at 1078.034 kb on - strand, within Ga0059261_1042 at 1078.034 kb on - strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.045 kb on + strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.046 kb on - strand, within Ga0059261_1042 at 1078.054 kb on + strand, within Ga0059261_1042 at 1078.054 kb on + strand, within Ga0059261_1042 at 1078.054 kb on + strand, within Ga0059261_1042 at 1078.054 kb on + strand, within Ga0059261_1042 at 1078.054 kb on + strand, within Ga0059261_1042 at 1078.055 kb on - strand, within Ga0059261_1042 at 1078.055 kb on - strand, within Ga0059261_1042 at 1078.055 kb on - strand, within Ga0059261_1042 at 1078.055 kb on - strand, within Ga0059261_1042 at 1078.055 kb on - strand, within Ga0059261_1042 at 1078.055 kb on - strand, within Ga0059261_1042 at 1078.171 kb on + strand, within Ga0059261_1042 at 1078.171 kb on + strand, within Ga0059261_1042 at 1078.171 kb on + strand, within Ga0059261_1042 at 1078.172 kb on - strand, within Ga0059261_1042 at 1078.172 kb on - strand, within Ga0059261_1042 at 1078.201 kb on + strand, within Ga0059261_1042 at 1078.201 kb on + strand, within Ga0059261_1042 at 1078.202 kb on - strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.254 kb on + strand, within Ga0059261_1042 at 1078.255 kb on - strand, within Ga0059261_1042 at 1078.255 kb on - strand, within Ga0059261_1042 at 1078.255 kb on - strand, within Ga0059261_1042 at 1078.255 kb on - strand, within Ga0059261_1042 at 1078.255 kb on - strand, within Ga0059261_1042 at 1078.263 kb on + strand, within Ga0059261_1042 at 1078.264 kb on - strand, within Ga0059261_1042 at 1078.339 kb on + strand at 1078.339 kb on + strand at 1078.340 kb on - strand at 1078.340 kb on - strand at 1078.385 kb on + strand at 1078.386 kb on - strand at 1078.386 kb on - strand at 1078.386 kb on - strand at 1078.739 kb on + strand, within Ga0059261_1043 at 1078.739 kb on + strand, within Ga0059261_1043 at 1078.739 kb on + strand, within Ga0059261_1043 at 1078.739 kb on + strand, within Ga0059261_1043 at 1078.739 kb on + strand, within Ga0059261_1043 at 1078.740 kb on - strand, within Ga0059261_1043 at 1078.882 kb on + strand, within Ga0059261_1043 at 1078.882 kb on + strand, within Ga0059261_1043 at 1078.882 kb on + strand, within Ga0059261_1043 at 1078.883 kb on - strand, within Ga0059261_1043 at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.958 kb on + strand at 1078.959 kb on - strand at 1078.959 kb on - strand at 1078.959 kb on - strand at 1078.959 kb on - strand at 1078.994 kb on + strand at 1078.994 kb on + strand at 1079.084 kb on + strand, within Ga0059261_1044 at 1079.084 kb on + strand, within Ga0059261_1044 at 1079.085 kb on - strand, within Ga0059261_1044 at 1079.085 kb on - strand, within Ga0059261_1044 at 1079.085 kb on - strand, within Ga0059261_1044 at 1079.085 kb on - strand, within Ga0059261_1044 at 1079.085 kb on - strand, within Ga0059261_1044 at 1079.200 kb on + strand, within Ga0059261_1044 at 1079.200 kb on + strand, within Ga0059261_1044 at 1079.200 kb on + strand, within Ga0059261_1044 at 1079.200 kb on + strand, within Ga0059261_1044 at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.201 kb on - strand at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.201 kb on - strand, within Ga0059261_1044 at 1079.212 kb on + strand, within Ga0059261_1044 at 1079.345 kb on + strand, within Ga0059261_1044 at 1079.345 kb on + strand, within Ga0059261_1044 at 1079.345 kb on + strand at 1079.345 kb on + strand, within Ga0059261_1044 at 1079.345 kb on + strand, within Ga0059261_1044 at 1079.346 kb on - strand, within Ga0059261_1044 at 1079.346 kb on - strand, within Ga0059261_1044 at 1079.346 kb on - strand, within Ga0059261_1044 at 1079.468 kb on + strand, within Ga0059261_1044 at 1079.468 kb on + strand, within Ga0059261_1044 at 1079.468 kb on + strand, within Ga0059261_1044 at 1079.468 kb on + strand, within Ga0059261_1044 at 1079.468 kb on + strand, within Ga0059261_1044 at 1079.469 kb on - strand, within Ga0059261_1044 at 1079.469 kb on - strand, within Ga0059261_1044 at 1079.469 kb on - strand, within Ga0059261_1044 at 1079.469 kb on - strand, within Ga0059261_1044 at 1079.469 kb on - strand, within Ga0059261_1044 at 1079.469 kb on - strand, within Ga0059261_1044 at 1079.488 kb on + strand, within Ga0059261_1044 at 1079.488 kb on + strand, within Ga0059261_1044 at 1079.489 kb on - strand, within Ga0059261_1044 at 1079.489 kb on - strand, within Ga0059261_1044 at 1079.489 kb on - strand, within Ga0059261_1044 at 1079.614 kb on + strand at 1079.614 kb on + strand at 1079.614 kb on + strand at 1079.614 kb on + strand at 1079.615 kb on - strand at 1079.615 kb on - strand at 1079.815 kb on + strand, within Ga0059261_1045 at 1079.895 kb on + strand at 1079.896 kb on - strand at 1080.236 kb on + strand, within Ga0059261_1046 at 1080.237 kb on - strand, within Ga0059261_1046 at 1080.297 kb on + strand, within Ga0059261_1046 at 1080.297 kb on + strand, within Ga0059261_1046 at 1080.297 kb on + strand, within Ga0059261_1046 at 1080.297 kb on + strand, within Ga0059261_1046 at 1080.298 kb on - strand, within Ga0059261_1046 at 1080.298 kb on - strand, within Ga0059261_1046 at 1080.318 kb on + strand, within Ga0059261_1046 at 1080.318 kb on + strand, within Ga0059261_1046 at 1080.318 kb on + strand, within Ga0059261_1046 at 1080.318 kb on + strand, within Ga0059261_1046 at 1080.319 kb on - strand, within Ga0059261_1046 at 1080.319 kb on - strand, within Ga0059261_1046 at 1080.319 kb on - strand, within Ga0059261_1046 at 1080.319 kb on - strand, within Ga0059261_1046 at 1080.320 kb on + strand, within Ga0059261_1046 at 1080.320 kb on + strand, within Ga0059261_1046 at 1080.321 kb on - strand, within Ga0059261_1046 at 1080.321 kb on - strand, within Ga0059261_1046 at 1080.321 kb on - strand, within Ga0059261_1046 at 1080.429 kb on + strand at 1080.532 kb on + strand at 1080.532 kb on + strand at 1080.533 kb on - strand at 1080.533 kb on - strand at 1080.533 kb on - strand at 1080.533 kb on - strand at 1080.533 kb on - strand at 1080.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,078,013 + Ga0059261_1042 0.56 +1.4 1,078,013 + Ga0059261_1042 0.56 -0.3 1,078,014 - Ga0059261_1042 0.56 -0.5 1,078,014 - Ga0059261_1042 0.56 -0.6 1,078,014 - Ga0059261_1042 0.56 +0.7 1,078,033 + Ga0059261_1042 0.59 -0.1 1,078,033 + Ga0059261_1042 0.59 +0.5 1,078,033 + Ga0059261_1042 0.59 -0.2 1,078,034 - Ga0059261_1042 0.59 -0.3 1,078,034 - Ga0059261_1042 0.59 -0.8 1,078,034 - Ga0059261_1042 0.59 +0.5 1,078,034 - Ga0059261_1042 0.59 -0.3 1,078,045 + Ga0059261_1042 0.60 -0.3 1,078,045 + Ga0059261_1042 0.60 +0.1 1,078,045 + Ga0059261_1042 0.60 -2.9 1,078,045 + Ga0059261_1042 0.60 -0.1 1,078,045 + Ga0059261_1042 0.60 +0.3 1,078,045 + Ga0059261_1042 0.60 +0.2 1,078,045 + Ga0059261_1042 0.60 +0.3 1,078,045 + Ga0059261_1042 0.60 +0.2 1,078,045 + Ga0059261_1042 0.60 -0.7 1,078,045 + Ga0059261_1042 0.60 +0.1 1,078,045 + Ga0059261_1042 0.60 +0.1 1,078,046 - Ga0059261_1042 0.60 +0.8 1,078,046 - Ga0059261_1042 0.60 +0.2 1,078,046 - Ga0059261_1042 0.60 -0.8 1,078,046 - Ga0059261_1042 0.60 +0.2 1,078,046 - Ga0059261_1042 0.60 +0.3 1,078,046 - Ga0059261_1042 0.60 +0.7 1,078,046 - Ga0059261_1042 0.60 -0.4 1,078,046 - Ga0059261_1042 0.60 -0.3 1,078,046 - Ga0059261_1042 0.60 +0.3 1,078,046 - Ga0059261_1042 0.60 -0.1 1,078,046 - Ga0059261_1042 0.60 -0.2 1,078,046 - Ga0059261_1042 0.60 +0.3 1,078,046 - Ga0059261_1042 0.60 -0.1 1,078,046 - Ga0059261_1042 0.60 +0.3 1,078,046 - Ga0059261_1042 0.60 -0.1 1,078,046 - Ga0059261_1042 0.60 -0.7 1,078,046 - Ga0059261_1042 0.60 -0.0 1,078,054 + Ga0059261_1042 0.61 +0.5 1,078,054 + Ga0059261_1042 0.61 -2.0 1,078,054 + Ga0059261_1042 0.61 -0.7 1,078,054 + Ga0059261_1042 0.61 +0.6 1,078,054 + Ga0059261_1042 0.61 +0.5 1,078,055 - Ga0059261_1042 0.61 -0.9 1,078,055 - Ga0059261_1042 0.61 +0.3 1,078,055 - Ga0059261_1042 0.61 +0.7 1,078,055 - Ga0059261_1042 0.61 +0.4 1,078,055 - Ga0059261_1042 0.61 -0.4 1,078,055 - Ga0059261_1042 0.61 +0.2 1,078,171 + Ga0059261_1042 0.76 +0.1 1,078,171 + Ga0059261_1042 0.76 -0.7 1,078,171 + Ga0059261_1042 0.76 -0.8 1,078,172 - Ga0059261_1042 0.76 +0.2 1,078,172 - Ga0059261_1042 0.76 -0.3 1,078,201 + Ga0059261_1042 0.80 -0.4 1,078,201 + Ga0059261_1042 0.80 +0.5 1,078,202 - Ga0059261_1042 0.80 -0.8 1,078,254 + Ga0059261_1042 0.87 +0.2 1,078,254 + Ga0059261_1042 0.87 +0.4 1,078,254 + Ga0059261_1042 0.87 +0.3 1,078,254 + Ga0059261_1042 0.87 +0.4 1,078,254 + Ga0059261_1042 0.87 -1.1 1,078,254 + Ga0059261_1042 0.87 +0.0 1,078,254 + Ga0059261_1042 0.87 +0.7 1,078,255 - Ga0059261_1042 0.87 -0.7 1,078,255 - Ga0059261_1042 0.87 +0.2 1,078,255 - Ga0059261_1042 0.87 -0.8 1,078,255 - Ga0059261_1042 0.87 -0.3 1,078,255 - Ga0059261_1042 0.87 +0.0 1,078,263 + Ga0059261_1042 0.88 -0.0 1,078,264 - Ga0059261_1042 0.88 -0.4 1,078,339 + +0.3 1,078,339 + -1.7 1,078,340 - -2.7 1,078,340 - -0.2 1,078,385 + +0.5 1,078,386 - -0.1 1,078,386 - -0.2 1,078,386 - -0.6 1,078,739 + Ga0059261_1043 0.62 +0.1 1,078,739 + Ga0059261_1043 0.62 -0.4 1,078,739 + Ga0059261_1043 0.62 -0.1 1,078,739 + Ga0059261_1043 0.62 -0.7 1,078,739 + Ga0059261_1043 0.62 +0.3 1,078,740 - Ga0059261_1043 0.62 -0.3 1,078,882 + Ga0059261_1043 0.87 +0.3 1,078,882 + Ga0059261_1043 0.87 -0.1 1,078,882 + Ga0059261_1043 0.87 -0.1 1,078,883 - Ga0059261_1043 0.88 +0.7 1,078,958 + +0.6 1,078,958 + +1.2 1,078,958 + -0.4 1,078,958 + -0.8 1,078,958 + -0.4 1,078,958 + -0.2 1,078,958 + +0.3 1,078,958 + -0.3 1,078,958 + +0.7 1,078,959 - -0.2 1,078,959 - +0.2 1,078,959 - -0.2 1,078,959 - -1.1 1,078,994 + -0.3 1,078,994 + +0.4 1,079,084 + Ga0059261_1044 0.13 -3.5 1,079,084 + Ga0059261_1044 0.13 -3.2 1,079,085 - Ga0059261_1044 0.13 -3.0 1,079,085 - Ga0059261_1044 0.13 -2.2 1,079,085 - Ga0059261_1044 0.13 -4.4 1,079,085 - Ga0059261_1044 0.13 -4.7 1,079,085 - Ga0059261_1044 0.13 -2.8 1,079,200 + Ga0059261_1044 0.33 -3.1 1,079,200 + Ga0059261_1044 0.33 -2.9 1,079,200 + Ga0059261_1044 0.33 -2.0 1,079,200 + Ga0059261_1044 0.33 -1.8 1,079,201 - Ga0059261_1044 0.33 -3.1 1,079,201 - Ga0059261_1044 0.33 -3.4 1,079,201 - Ga0059261_1044 0.33 -4.2 1,079,201 - Ga0059261_1044 0.33 -2.1 1,079,201 - Ga0059261_1044 0.33 -3.0 1,079,201 - -0.3 1,079,201 - Ga0059261_1044 0.33 -2.6 1,079,201 - Ga0059261_1044 0.33 -2.4 1,079,212 + Ga0059261_1044 0.35 -1.7 1,079,345 + Ga0059261_1044 0.58 -0.6 1,079,345 + Ga0059261_1044 0.58 -2.6 1,079,345 + -0.3 1,079,345 + Ga0059261_1044 0.58 -2.6 1,079,345 + Ga0059261_1044 0.58 -1.8 1,079,346 - Ga0059261_1044 0.58 -1.4 1,079,346 - Ga0059261_1044 0.58 -2.9 1,079,346 - Ga0059261_1044 0.58 -2.1 1,079,468 + Ga0059261_1044 0.79 -1.1 1,079,468 + Ga0059261_1044 0.79 -2.1 1,079,468 + Ga0059261_1044 0.79 -1.4 1,079,468 + Ga0059261_1044 0.79 -2.7 1,079,468 + Ga0059261_1044 0.79 -2.6 1,079,469 - Ga0059261_1044 0.79 -4.8 1,079,469 - Ga0059261_1044 0.79 -4.1 1,079,469 - Ga0059261_1044 0.79 -4.1 1,079,469 - Ga0059261_1044 0.79 -0.8 1,079,469 - Ga0059261_1044 0.79 -1.8 1,079,469 - Ga0059261_1044 0.79 -3.9 1,079,488 + Ga0059261_1044 0.82 -3.4 1,079,488 + Ga0059261_1044 0.82 -2.4 1,079,489 - Ga0059261_1044 0.82 -1.4 1,079,489 - Ga0059261_1044 0.82 -2.3 1,079,489 - Ga0059261_1044 0.82 -2.8 1,079,614 + -1.0 1,079,614 + -1.4 1,079,614 + -0.7 1,079,614 + -0.8 1,079,615 - -4.4 1,079,615 - -2.0 1,079,815 + Ga0059261_1045 0.78 -2.0 1,079,895 + -2.5 1,079,896 - -3.4 1,080,236 + Ga0059261_1046 0.60 -3.2 1,080,237 - Ga0059261_1046 0.60 -2.6 1,080,297 + Ga0059261_1046 0.70 -3.4 1,080,297 + Ga0059261_1046 0.70 -2.5 1,080,297 + Ga0059261_1046 0.70 -1.8 1,080,297 + Ga0059261_1046 0.70 -1.8 1,080,298 - Ga0059261_1046 0.71 -3.8 1,080,298 - Ga0059261_1046 0.71 -3.6 1,080,318 + Ga0059261_1046 0.74 -3.5 1,080,318 + Ga0059261_1046 0.74 -3.7 1,080,318 + Ga0059261_1046 0.74 -3.3 1,080,318 + Ga0059261_1046 0.74 -1.7 1,080,319 - Ga0059261_1046 0.74 -2.7 1,080,319 - Ga0059261_1046 0.74 -1.8 1,080,319 - Ga0059261_1046 0.74 -2.7 1,080,319 - Ga0059261_1046 0.74 -2.1 1,080,320 + Ga0059261_1046 0.74 -0.6 1,080,320 + Ga0059261_1046 0.74 -2.0 1,080,321 - Ga0059261_1046 0.74 -3.9 1,080,321 - Ga0059261_1046 0.74 -3.7 1,080,321 - Ga0059261_1046 0.74 -2.7 1,080,429 + -3.1 1,080,532 + -1.7 1,080,532 + -2.6 1,080,533 - -3.4 1,080,533 - -0.6 1,080,533 - -1.6 1,080,533 - -2.3 1,080,533 - -3.0 1,080,533 - -3.2
Or see this region's nucleotide sequence