Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0992

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0991 and Ga0059261_0992 overlap by 4 nucleotidesGa0059261_0992 and Ga0059261_0993 overlap by 4 nucleotides Ga0059261_0991: Ga0059261_0991 - Methionine synthase I (cobalamin-dependent), methyltransferase domain, at 1,028,212 to 1,029,258 _0991 Ga0059261_0992: Ga0059261_0992 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 1,029,255 to 1,030,172 _0992 Ga0059261_0993: Ga0059261_0993 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,030,169 to 1,031,128 _0993 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1028.319 kb on + strand, within Ga0059261_0991at 1028.319 kb on + strand, within Ga0059261_0991at 1028.320 kb on - strand, within Ga0059261_0991at 1028.320 kb on - strand, within Ga0059261_0991at 1028.320 kb on - strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.421 kb on - strand, within Ga0059261_0991at 1028.456 kb on + strand, within Ga0059261_0991at 1028.456 kb on + strand, within Ga0059261_0991at 1028.592 kb on + strand, within Ga0059261_0991at 1028.783 kb on + strand, within Ga0059261_0991at 1028.783 kb on + strand, within Ga0059261_0991at 1028.784 kb on - strand, within Ga0059261_0991at 1029.056 kb on + strand, within Ga0059261_0991at 1029.056 kb on + strand, within Ga0059261_0991at 1029.057 kb on - strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.153 kb on - strand, within Ga0059261_0991at 1029.153 kb on - strand, within Ga0059261_0991at 1029.316 kb on + strandat 1029.316 kb on + strandat 1029.317 kb on - strandat 1029.317 kb on - strandat 1029.343 kb on + strandat 1029.343 kb on + strandat 1029.344 kb on - strandat 1029.344 kb on - strandat 1029.344 kb on - strandat 1029.373 kb on + strand, within Ga0059261_0992at 1029.374 kb on - strand, within Ga0059261_0992at 1029.374 kb on - strand, within Ga0059261_0992at 1029.781 kb on + strand, within Ga0059261_0992at 1029.781 kb on + strand, within Ga0059261_0992at 1029.781 kb on + strandat 1029.781 kb on + strand, within Ga0059261_0992at 1029.868 kb on + strand, within Ga0059261_0992at 1029.869 kb on - strand, within Ga0059261_0992at 1029.869 kb on - strand, within Ga0059261_0992at 1029.957 kb on - strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.510 kb on - strand, within Ga0059261_0993at 1030.688 kb on - strand, within Ga0059261_0993at 1031.134 kb on + strandat 1031.140 kb on + strandat 1031.141 kb on - strandat 1031.141 kb on - strandat 1031.141 kb on - strandat 1031.142 kb on + strandat 1031.142 kb on + strandat 1031.142 kb on + strandat 1031.143 kb on - strandat 1031.143 kb on - strandat 1031.143 kb on - strandat 1031.149 kb on - strandat 1031.154 kb on + strandat 1031.154 kb on + strandat 1031.154 kb on + strandat 1031.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,028,319 + Ga0059261_0991 0.10 -1.8
1,028,319 + Ga0059261_0991 0.10 -2.6
1,028,320 - Ga0059261_0991 0.10 -1.3
1,028,320 - Ga0059261_0991 0.10 -1.7
1,028,320 - Ga0059261_0991 0.10 -3.6
1,028,420 + Ga0059261_0991 0.20 -1.3
1,028,420 + Ga0059261_0991 0.20 -2.7
1,028,420 + Ga0059261_0991 0.20 -3.0
1,028,420 + Ga0059261_0991 0.20 -3.3
1,028,420 + Ga0059261_0991 0.20 -3.1
1,028,420 + Ga0059261_0991 0.20 -1.3
1,028,421 - Ga0059261_0991 0.20 -1.3
1,028,456 + Ga0059261_0991 0.23 -3.9
1,028,456 + Ga0059261_0991 0.23 -1.7
1,028,592 + Ga0059261_0991 0.36 -1.6
1,028,783 + Ga0059261_0991 0.55 -2.5
1,028,783 + Ga0059261_0991 0.55 -1.3
1,028,784 - Ga0059261_0991 0.55 -1.9
1,029,056 + Ga0059261_0991 0.81 -4.1
1,029,056 + Ga0059261_0991 0.81 -1.4
1,029,057 - Ga0059261_0991 0.81 -1.9
1,029,152 + Ga0059261_0991 0.90 -1.6
1,029,152 + Ga0059261_0991 0.90 -3.8
1,029,152 + Ga0059261_0991 0.90 -1.8
1,029,152 + Ga0059261_0991 0.90 -3.7
1,029,152 + Ga0059261_0991 0.90 -3.1
1,029,153 - Ga0059261_0991 0.90 -2.0
1,029,153 - Ga0059261_0991 0.90 -1.1
1,029,316 + -1.1
1,029,316 + -2.3
1,029,317 - -2.3
1,029,317 - -3.5
1,029,343 + -1.5
1,029,343 + -3.2
1,029,344 - -2.8
1,029,344 - -0.8
1,029,344 - -4.1
1,029,373 + Ga0059261_0992 0.13 -4.0
1,029,374 - Ga0059261_0992 0.13 -3.4
1,029,374 - Ga0059261_0992 0.13 -0.7
1,029,781 + Ga0059261_0992 0.57 -3.5
1,029,781 + Ga0059261_0992 0.57 -3.2
1,029,781 + +0.2
1,029,781 + Ga0059261_0992 0.57 -4.1
1,029,868 + Ga0059261_0992 0.67 -3.2
1,029,869 - Ga0059261_0992 0.67 -3.8
1,029,869 - Ga0059261_0992 0.67 -1.4
1,029,957 - Ga0059261_0992 0.76 -3.3
1,030,006 + Ga0059261_0992 0.82 +0.2
1,030,006 + Ga0059261_0992 0.82 -3.2
1,030,006 + Ga0059261_0992 0.82 -3.8
1,030,510 - Ga0059261_0993 0.36 +0.4
1,030,688 - Ga0059261_0993 0.54 -0.1
1,031,134 + -1.3
1,031,140 + -0.9
1,031,141 - -1.3
1,031,141 - +0.4
1,031,141 - +0.1
1,031,142 + -0.8
1,031,142 + -0.5
1,031,142 + -1.2
1,031,143 - -0.2
1,031,143 - +0.2
1,031,143 - -0.1
1,031,149 - -0.5
1,031,154 + -1.7
1,031,154 + -0.4
1,031,154 + +0.3
1,031,155 - -0.1

Or see this region's nucleotide sequence