Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0991

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0990 and Ga0059261_0991 are separated by 131 nucleotidesGa0059261_0991 and Ga0059261_0992 overlap by 4 nucleotidesGa0059261_0992 and Ga0059261_0993 overlap by 4 nucleotides Ga0059261_0990: Ga0059261_0990 - methionine synthase (B12-dependent) (EC 2.1.1.13), at 1,025,483 to 1,028,080 _0990 Ga0059261_0991: Ga0059261_0991 - Methionine synthase I (cobalamin-dependent), methyltransferase domain, at 1,028,212 to 1,029,258 _0991 Ga0059261_0992: Ga0059261_0992 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 1,029,255 to 1,030,172 _0992 Ga0059261_0993: Ga0059261_0993 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,030,169 to 1,031,128 _0993 Position (kb) 1028 1029 1030Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1027.314 kb on + strand, within Ga0059261_0990at 1027.314 kb on + strand, within Ga0059261_0990at 1027.314 kb on + strand, within Ga0059261_0990at 1027.314 kb on + strand, within Ga0059261_0990at 1027.315 kb on - strand, within Ga0059261_0990at 1027.315 kb on - strand, within Ga0059261_0990at 1027.315 kb on - strand, within Ga0059261_0990at 1027.315 kb on - strand, within Ga0059261_0990at 1027.315 kb on - strand, within Ga0059261_0990at 1027.374 kb on + strand, within Ga0059261_0990at 1027.375 kb on - strand, within Ga0059261_0990at 1027.375 kb on - strand, within Ga0059261_0990at 1027.375 kb on - strand, within Ga0059261_0990at 1027.375 kb on - strand, within Ga0059261_0990at 1027.456 kb on + strand, within Ga0059261_0990at 1027.456 kb on + strand, within Ga0059261_0990at 1027.456 kb on + strand, within Ga0059261_0990at 1027.457 kb on - strand, within Ga0059261_0990at 1027.457 kb on - strand, within Ga0059261_0990at 1027.457 kb on - strand, within Ga0059261_0990at 1027.457 kb on - strand, within Ga0059261_0990at 1027.515 kb on + strand, within Ga0059261_0990at 1027.515 kb on + strand, within Ga0059261_0990at 1027.515 kb on + strand, within Ga0059261_0990at 1027.516 kb on - strand, within Ga0059261_0990at 1027.516 kb on - strand, within Ga0059261_0990at 1027.516 kb on - strand, within Ga0059261_0990at 1027.516 kb on - strand, within Ga0059261_0990at 1027.516 kb on - strand, within Ga0059261_0990at 1027.612 kb on - strand, within Ga0059261_0990at 1027.612 kb on - strand, within Ga0059261_0990at 1027.649 kb on - strand, within Ga0059261_0990at 1027.649 kb on - strand, within Ga0059261_0990at 1027.698 kb on + strand, within Ga0059261_0990at 1027.698 kb on + strand, within Ga0059261_0990at 1027.699 kb on - strand, within Ga0059261_0990at 1027.699 kb on - strand, within Ga0059261_0990at 1027.699 kb on - strand, within Ga0059261_0990at 1027.984 kb on + strandat 1027.984 kb on + strandat 1027.984 kb on + strandat 1027.984 kb on + strandat 1027.985 kb on - strandat 1027.985 kb on - strandat 1027.985 kb on - strandat 1027.985 kb on - strandat 1027.986 kb on + strandat 1027.986 kb on + strandat 1028.039 kb on - strandat 1028.319 kb on + strand, within Ga0059261_0991at 1028.319 kb on + strand, within Ga0059261_0991at 1028.320 kb on - strand, within Ga0059261_0991at 1028.320 kb on - strand, within Ga0059261_0991at 1028.320 kb on - strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.420 kb on + strand, within Ga0059261_0991at 1028.421 kb on - strand, within Ga0059261_0991at 1028.456 kb on + strand, within Ga0059261_0991at 1028.456 kb on + strand, within Ga0059261_0991at 1028.592 kb on + strand, within Ga0059261_0991at 1028.783 kb on + strand, within Ga0059261_0991at 1028.783 kb on + strand, within Ga0059261_0991at 1028.784 kb on - strand, within Ga0059261_0991at 1029.056 kb on + strand, within Ga0059261_0991at 1029.056 kb on + strand, within Ga0059261_0991at 1029.057 kb on - strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.152 kb on + strand, within Ga0059261_0991at 1029.153 kb on - strand, within Ga0059261_0991at 1029.153 kb on - strand, within Ga0059261_0991at 1029.316 kb on + strandat 1029.316 kb on + strandat 1029.317 kb on - strandat 1029.317 kb on - strandat 1029.343 kb on + strandat 1029.343 kb on + strandat 1029.344 kb on - strandat 1029.344 kb on - strandat 1029.344 kb on - strandat 1029.373 kb on + strand, within Ga0059261_0992at 1029.374 kb on - strand, within Ga0059261_0992at 1029.374 kb on - strand, within Ga0059261_0992at 1029.781 kb on + strand, within Ga0059261_0992at 1029.781 kb on + strand, within Ga0059261_0992at 1029.781 kb on + strandat 1029.781 kb on + strand, within Ga0059261_0992at 1029.868 kb on + strand, within Ga0059261_0992at 1029.869 kb on - strand, within Ga0059261_0992at 1029.869 kb on - strand, within Ga0059261_0992at 1029.957 kb on - strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,027,314 + Ga0059261_0990 0.70 -1.8
1,027,314 + Ga0059261_0990 0.70 -3.7
1,027,314 + Ga0059261_0990 0.70 -1.3
1,027,314 + Ga0059261_0990 0.70 -3.8
1,027,315 - Ga0059261_0990 0.71 -1.3
1,027,315 - Ga0059261_0990 0.71 -3.1
1,027,315 - Ga0059261_0990 0.71 +0.5
1,027,315 - Ga0059261_0990 0.71 -2.3
1,027,315 - Ga0059261_0990 0.71 -4.8
1,027,374 + Ga0059261_0990 0.73 -3.5
1,027,375 - Ga0059261_0990 0.73 -2.1
1,027,375 - Ga0059261_0990 0.73 -1.3
1,027,375 - Ga0059261_0990 0.73 -2.6
1,027,375 - Ga0059261_0990 0.73 -0.3
1,027,456 + Ga0059261_0990 0.76 -3.7
1,027,456 + Ga0059261_0990 0.76 -0.8
1,027,456 + Ga0059261_0990 0.76 -2.4
1,027,457 - Ga0059261_0990 0.76 -2.5
1,027,457 - Ga0059261_0990 0.76 -3.5
1,027,457 - Ga0059261_0990 0.76 -2.6
1,027,457 - Ga0059261_0990 0.76 -0.6
1,027,515 + Ga0059261_0990 0.78 -2.3
1,027,515 + Ga0059261_0990 0.78 -3.3
1,027,515 + Ga0059261_0990 0.78 -0.4
1,027,516 - Ga0059261_0990 0.78 -4.1
1,027,516 - Ga0059261_0990 0.78 -1.5
1,027,516 - Ga0059261_0990 0.78 -2.9
1,027,516 - Ga0059261_0990 0.78 -0.8
1,027,516 - Ga0059261_0990 0.78 -2.1
1,027,612 - Ga0059261_0990 0.82 -2.7
1,027,612 - Ga0059261_0990 0.82 -3.3
1,027,649 - Ga0059261_0990 0.83 -2.7
1,027,649 - Ga0059261_0990 0.83 -3.9
1,027,698 + Ga0059261_0990 0.85 -1.3
1,027,698 + Ga0059261_0990 0.85 -0.8
1,027,699 - Ga0059261_0990 0.85 +0.1
1,027,699 - Ga0059261_0990 0.85 -1.7
1,027,699 - Ga0059261_0990 0.85 -4.1
1,027,984 + -2.8
1,027,984 + -4.5
1,027,984 + -4.0
1,027,984 + -3.0
1,027,985 - -2.1
1,027,985 - -2.5
1,027,985 - +0.2
1,027,985 - -1.9
1,027,986 + -0.6
1,027,986 + -1.7
1,028,039 - -3.1
1,028,319 + Ga0059261_0991 0.10 -1.8
1,028,319 + Ga0059261_0991 0.10 -2.6
1,028,320 - Ga0059261_0991 0.10 -1.3
1,028,320 - Ga0059261_0991 0.10 -1.7
1,028,320 - Ga0059261_0991 0.10 -3.6
1,028,420 + Ga0059261_0991 0.20 -1.3
1,028,420 + Ga0059261_0991 0.20 -2.7
1,028,420 + Ga0059261_0991 0.20 -3.0
1,028,420 + Ga0059261_0991 0.20 -3.3
1,028,420 + Ga0059261_0991 0.20 -3.1
1,028,420 + Ga0059261_0991 0.20 -1.3
1,028,421 - Ga0059261_0991 0.20 -1.3
1,028,456 + Ga0059261_0991 0.23 -3.9
1,028,456 + Ga0059261_0991 0.23 -1.7
1,028,592 + Ga0059261_0991 0.36 -1.6
1,028,783 + Ga0059261_0991 0.55 -2.5
1,028,783 + Ga0059261_0991 0.55 -1.3
1,028,784 - Ga0059261_0991 0.55 -1.9
1,029,056 + Ga0059261_0991 0.81 -4.1
1,029,056 + Ga0059261_0991 0.81 -1.4
1,029,057 - Ga0059261_0991 0.81 -1.9
1,029,152 + Ga0059261_0991 0.90 -1.6
1,029,152 + Ga0059261_0991 0.90 -3.8
1,029,152 + Ga0059261_0991 0.90 -1.8
1,029,152 + Ga0059261_0991 0.90 -3.7
1,029,152 + Ga0059261_0991 0.90 -3.1
1,029,153 - Ga0059261_0991 0.90 -2.0
1,029,153 - Ga0059261_0991 0.90 -1.1
1,029,316 + -1.1
1,029,316 + -2.3
1,029,317 - -2.3
1,029,317 - -3.5
1,029,343 + -1.5
1,029,343 + -3.2
1,029,344 - -2.8
1,029,344 - -0.8
1,029,344 - -4.1
1,029,373 + Ga0059261_0992 0.13 -4.0
1,029,374 - Ga0059261_0992 0.13 -3.4
1,029,374 - Ga0059261_0992 0.13 -0.7
1,029,781 + Ga0059261_0992 0.57 -3.5
1,029,781 + Ga0059261_0992 0.57 -3.2
1,029,781 + +0.2
1,029,781 + Ga0059261_0992 0.57 -4.1
1,029,868 + Ga0059261_0992 0.67 -3.2
1,029,869 - Ga0059261_0992 0.67 -3.8
1,029,869 - Ga0059261_0992 0.67 -1.4
1,029,957 - Ga0059261_0992 0.76 -3.3
1,030,006 + Ga0059261_0992 0.82 +0.2
1,030,006 + Ga0059261_0992 0.82 -3.2
1,030,006 + Ga0059261_0992 0.82 -3.8

Or see this region's nucleotide sequence