Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0929 and Ga0059261_0930 overlap by 4 nucleotides Ga0059261_0930 and Ga0059261_0931 overlap by 4 nucleotides Ga0059261_0931 and Ga0059261_0932 are separated by 80 nucleotides
Ga0059261_0929: Ga0059261_0929 - anthranilate phosphoribosyltransferase, at 960,921 to 961,916
_0929
Ga0059261_0930: Ga0059261_0930 - indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 961,913 to 962,695
_0930
Ga0059261_0931: Ga0059261_0931 - molybdenum cofactor biosynthesis protein MoaC, at 962,692 to 963,168
_0931
Ga0059261_0932: Ga0059261_0932 - PilZ domain, at 963,249 to 964,196
_0932
Position (kb) 961
962
963 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 961.300 kb on + strand, within Ga0059261_0929 at 961.300 kb on + strand, within Ga0059261_0929 at 961.509 kb on + strand, within Ga0059261_0929 at 961.509 kb on + strand, within Ga0059261_0929 at 961.509 kb on + strand, within Ga0059261_0929 at 961.510 kb on - strand at 961.521 kb on + strand, within Ga0059261_0929 at 961.521 kb on + strand, within Ga0059261_0929 at 961.521 kb on + strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.918 kb on + strand at 961.918 kb on + strand at 961.918 kb on + strand at 961.919 kb on - strand at 962.153 kb on + strand, within Ga0059261_0930 at 962.153 kb on + strand, within Ga0059261_0930 at 962.153 kb on + strand, within Ga0059261_0930 at 962.154 kb on - strand, within Ga0059261_0930 at 962.222 kb on + strand, within Ga0059261_0930 at 962.223 kb on - strand, within Ga0059261_0930 at 962.223 kb on - strand, within Ga0059261_0930 at 962.223 kb on - strand, within Ga0059261_0930 at 962.223 kb on - strand at 962.522 kb on + strand, within Ga0059261_0930 at 962.522 kb on + strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.555 kb on - strand, within Ga0059261_0930 at 963.065 kb on - strand, within Ga0059261_0931 at 963.087 kb on + strand, within Ga0059261_0931 at 963.088 kb on - strand, within Ga0059261_0931 at 963.108 kb on + strand, within Ga0059261_0931 at 963.166 kb on + strand at 963.166 kb on + strand at 963.167 kb on - strand at 963.167 kb on - strand at 963.295 kb on + strand at 963.295 kb on + strand at 963.296 kb on - strand at 963.541 kb on + strand, within Ga0059261_0932 at 963.541 kb on + strand, within Ga0059261_0932 at 963.541 kb on + strand, within Ga0059261_0932 at 963.541 kb on + strand, within Ga0059261_0932
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 961,300 + Ga0059261_0929 0.38 -2.7 961,300 + Ga0059261_0929 0.38 -2.8 961,509 + Ga0059261_0929 0.59 -2.3 961,509 + Ga0059261_0929 0.59 -1.7 961,509 + Ga0059261_0929 0.59 -3.2 961,510 - +0.2 961,521 + Ga0059261_0929 0.60 -2.0 961,521 + Ga0059261_0929 0.60 -4.5 961,521 + Ga0059261_0929 0.60 -2.6 961,522 - Ga0059261_0929 0.60 -2.6 961,522 - Ga0059261_0929 0.60 -2.3 961,522 - Ga0059261_0929 0.60 -3.4 961,522 - Ga0059261_0929 0.60 -1.4 961,918 + -1.1 961,918 + -1.4 961,918 + -1.6 961,919 - -2.6 962,153 + Ga0059261_0930 0.31 -1.3 962,153 + Ga0059261_0930 0.31 -2.6 962,153 + Ga0059261_0930 0.31 -0.3 962,154 - Ga0059261_0930 0.31 -2.2 962,222 + Ga0059261_0930 0.39 -1.7 962,223 - Ga0059261_0930 0.40 -5.3 962,223 - Ga0059261_0930 0.40 -1.4 962,223 - Ga0059261_0930 0.40 -2.8 962,223 - -1.3 962,522 + Ga0059261_0930 0.78 -3.3 962,522 + Ga0059261_0930 0.78 -0.4 962,523 - Ga0059261_0930 0.78 -1.8 962,523 - Ga0059261_0930 0.78 -4.1 962,523 - Ga0059261_0930 0.78 -3.3 962,523 - Ga0059261_0930 0.78 -3.8 962,523 - Ga0059261_0930 0.78 -3.8 962,554 + Ga0059261_0930 0.82 -3.4 962,554 + Ga0059261_0930 0.82 -2.7 962,554 + Ga0059261_0930 0.82 -1.0 962,554 + Ga0059261_0930 0.82 -0.8 962,554 + Ga0059261_0930 0.82 -3.0 962,554 + Ga0059261_0930 0.82 -2.1 962,554 + Ga0059261_0930 0.82 -3.3 962,555 - Ga0059261_0930 0.82 -2.0 963,065 - Ga0059261_0931 0.78 -0.7 963,087 + Ga0059261_0931 0.83 +0.4 963,088 - Ga0059261_0931 0.83 +0.9 963,108 + Ga0059261_0931 0.87 +0.5 963,166 + +0.0 963,166 + +0.8 963,167 - +0.1 963,167 - -0.4 963,295 + +0.1 963,295 + -0.5 963,296 - -0.1 963,541 + Ga0059261_0932 0.31 -0.3 963,541 + Ga0059261_0932 0.31 +0.4 963,541 + Ga0059261_0932 0.31 -0.2 963,541 + Ga0059261_0932 0.31 +0.8
Or see this region's nucleotide sequence