Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0929

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0926 and Ga0059261_0927 are separated by 94 nucleotidesGa0059261_0927 and Ga0059261_0928 are separated by 64 nucleotidesGa0059261_0928 and Ga0059261_0929 are separated by 131 nucleotidesGa0059261_0929 and Ga0059261_0930 overlap by 4 nucleotidesGa0059261_0930 and Ga0059261_0931 overlap by 4 nucleotides Ga0059261_0926: Ga0059261_0926 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 959,435 to 960,019 _0926 Ga0059261_0927: Ga0059261_0927 - Domain of unknown function (DUF333), at 960,114 to 960,347 _0927 Ga0059261_0928: Ga0059261_0928 - Glyoxalase-like domain, at 960,412 to 960,789 _0928 Ga0059261_0929: Ga0059261_0929 - anthranilate phosphoribosyltransferase, at 960,921 to 961,916 _0929 Ga0059261_0930: Ga0059261_0930 - indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 961,913 to 962,695 _0930 Ga0059261_0931: Ga0059261_0931 - molybdenum cofactor biosynthesis protein MoaC, at 962,692 to 963,168 _0931 Position (kb) 960 961 962Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 959.986 kb on + strandat 959.986 kb on + strandat 960.039 kb on - strandat 960.039 kb on - strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.123 kb on - strandat 960.123 kb on - strandat 960.351 kb on + strandat 960.351 kb on + strandat 960.351 kb on + strandat 960.352 kb on - strandat 960.524 kb on + strand, within Ga0059261_0928at 960.524 kb on + strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.752 kb on + strandat 960.752 kb on + strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.822 kb on - strandat 960.911 kb on + strandat 960.911 kb on + strandat 960.911 kb on + strandat 960.912 kb on - strandat 961.300 kb on + strand, within Ga0059261_0929at 961.300 kb on + strand, within Ga0059261_0929at 961.509 kb on + strand, within Ga0059261_0929at 961.509 kb on + strand, within Ga0059261_0929at 961.509 kb on + strand, within Ga0059261_0929at 961.510 kb on - strandat 961.521 kb on + strand, within Ga0059261_0929at 961.521 kb on + strand, within Ga0059261_0929at 961.521 kb on + strand, within Ga0059261_0929at 961.522 kb on - strand, within Ga0059261_0929at 961.522 kb on - strand, within Ga0059261_0929at 961.522 kb on - strand, within Ga0059261_0929at 961.522 kb on - strand, within Ga0059261_0929at 961.918 kb on + strandat 961.918 kb on + strandat 961.918 kb on + strandat 961.919 kb on - strandat 962.153 kb on + strand, within Ga0059261_0930at 962.153 kb on + strand, within Ga0059261_0930at 962.153 kb on + strand, within Ga0059261_0930at 962.154 kb on - strand, within Ga0059261_0930at 962.222 kb on + strand, within Ga0059261_0930at 962.223 kb on - strand, within Ga0059261_0930at 962.223 kb on - strand, within Ga0059261_0930at 962.223 kb on - strand, within Ga0059261_0930at 962.223 kb on - strandat 962.522 kb on + strand, within Ga0059261_0930at 962.522 kb on + strand, within Ga0059261_0930at 962.523 kb on - strand, within Ga0059261_0930at 962.523 kb on - strand, within Ga0059261_0930at 962.523 kb on - strand, within Ga0059261_0930at 962.523 kb on - strand, within Ga0059261_0930at 962.523 kb on - strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.554 kb on + strand, within Ga0059261_0930at 962.555 kb on - strand, within Ga0059261_0930

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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959,986 + -1.5
959,986 + -0.4
960,039 - -0.6
960,039 - +0.1
960,063 + -0.5
960,063 + -0.2
960,063 + -0.3
960,063 + +0.6
960,063 + +1.2
960,063 + -1.1
960,063 + +0.5
960,063 + -1.3
960,064 - -1.6
960,064 - +0.6
960,064 - -0.7
960,064 - -1.1
960,064 - +0.2
960,123 - +2.2
960,123 - +0.8
960,351 + -0.5
960,351 + +0.5
960,351 + -0.3
960,352 - +0.1
960,524 + Ga0059261_0928 0.30 -0.1
960,524 + Ga0059261_0928 0.30 +0.7
960,525 - Ga0059261_0928 0.30 +0.1
960,525 - Ga0059261_0928 0.30 +0.2
960,525 - Ga0059261_0928 0.30 -0.2
960,525 - Ga0059261_0928 0.30 +0.1
960,525 - Ga0059261_0928 0.30 +0.6
960,719 + Ga0059261_0928 0.81 -0.7
960,719 + Ga0059261_0928 0.81 -0.6
960,719 + Ga0059261_0928 0.81 -0.3
960,719 + Ga0059261_0928 0.81 +0.1
960,719 + Ga0059261_0928 0.81 -0.8
960,719 + Ga0059261_0928 0.81 +0.0
960,719 + Ga0059261_0928 0.81 -0.2
960,720 - Ga0059261_0928 0.81 -0.9
960,720 - Ga0059261_0928 0.81 +0.0
960,720 - Ga0059261_0928 0.81 -0.4
960,720 - Ga0059261_0928 0.81 -2.1
960,752 + -1.4
960,752 + +0.3
960,753 - -0.6
960,753 - -0.2
960,753 - +0.1
960,753 - +0.9
960,753 - +1.2
960,753 - +0.3
960,822 - -0.2
960,911 + +0.8
960,911 + +0.0
960,911 + +0.1
960,912 - +1.7
961,300 + Ga0059261_0929 0.38 -2.7
961,300 + Ga0059261_0929 0.38 -2.8
961,509 + Ga0059261_0929 0.59 -2.3
961,509 + Ga0059261_0929 0.59 -1.7
961,509 + Ga0059261_0929 0.59 -3.2
961,510 - +0.2
961,521 + Ga0059261_0929 0.60 -2.0
961,521 + Ga0059261_0929 0.60 -4.5
961,521 + Ga0059261_0929 0.60 -2.6
961,522 - Ga0059261_0929 0.60 -2.6
961,522 - Ga0059261_0929 0.60 -2.3
961,522 - Ga0059261_0929 0.60 -3.4
961,522 - Ga0059261_0929 0.60 -1.4
961,918 + -1.1
961,918 + -1.4
961,918 + -1.6
961,919 - -2.6
962,153 + Ga0059261_0930 0.31 -1.3
962,153 + Ga0059261_0930 0.31 -2.6
962,153 + Ga0059261_0930 0.31 -0.3
962,154 - Ga0059261_0930 0.31 -2.2
962,222 + Ga0059261_0930 0.39 -1.7
962,223 - Ga0059261_0930 0.40 -5.3
962,223 - Ga0059261_0930 0.40 -1.4
962,223 - Ga0059261_0930 0.40 -2.8
962,223 - -1.3
962,522 + Ga0059261_0930 0.78 -3.3
962,522 + Ga0059261_0930 0.78 -0.4
962,523 - Ga0059261_0930 0.78 -1.8
962,523 - Ga0059261_0930 0.78 -4.1
962,523 - Ga0059261_0930 0.78 -3.3
962,523 - Ga0059261_0930 0.78 -3.8
962,523 - Ga0059261_0930 0.78 -3.8
962,554 + Ga0059261_0930 0.82 -3.4
962,554 + Ga0059261_0930 0.82 -2.7
962,554 + Ga0059261_0930 0.82 -1.0
962,554 + Ga0059261_0930 0.82 -0.8
962,554 + Ga0059261_0930 0.82 -3.0
962,554 + Ga0059261_0930 0.82 -2.1
962,554 + Ga0059261_0930 0.82 -3.3
962,555 - Ga0059261_0930 0.82 -2.0

Or see this region's nucleotide sequence