Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0889 and Ga0059261_0890 are separated by 64 nucleotides Ga0059261_0890 and Ga0059261_0891 are separated by 19 nucleotides Ga0059261_0891 and Ga0059261_0892 are separated by 52 nucleotides Ga0059261_0892 and Ga0059261_0893 are separated by 27 nucleotides Ga0059261_0893 and Ga0059261_0894 are separated by 82 nucleotides Ga0059261_0894 and Ga0059261_0895 are separated by 60 nucleotides Ga0059261_0895 and Ga0059261_0896 overlap by 4 nucleotides
Ga0059261_0889: Ga0059261_0889 - Cold shock proteins, at 929,671 to 929,877
_0889
Ga0059261_0890: Ga0059261_0890 - hypothetical protein, at 929,942 to 930,160
_0890
Ga0059261_0891: Ga0059261_0891 - hypothetical protein, at 930,180 to 930,518
_0891
Ga0059261_0892: Ga0059261_0892 - hypothetical protein, at 930,571 to 930,699
_0892
Ga0059261_0893: Ga0059261_0893 - inosine-5'-monophosphate dehydrogenase, at 930,727 to 932,184
_0893
Ga0059261_0894: Ga0059261_0894 - hypothetical protein, at 932,267 to 932,671
_0894
Ga0059261_0895: Ga0059261_0895 - Protein of unknown function (DUF2809), at 932,732 to 933,115
_0895
Ga0059261_0896: Ga0059261_0896 - Citrate lyase beta subunit, at 933,112 to 933,930
_0896
Position (kb) 930
931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 929.819 kb on - strand, within Ga0059261_0889 at 929.819 kb on - strand at 929.819 kb on - strand, within Ga0059261_0889 at 929.819 kb on - strand, within Ga0059261_0889 at 929.959 kb on + strand at 929.959 kb on + strand at 929.959 kb on + strand at 929.960 kb on - strand at 929.960 kb on - strand at 930.076 kb on + strand, within Ga0059261_0890 at 930.076 kb on + strand, within Ga0059261_0890 at 930.076 kb on + strand, within Ga0059261_0890 at 930.098 kb on + strand, within Ga0059261_0890 at 930.098 kb on + strand, within Ga0059261_0890 at 930.099 kb on - strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.158 kb on + strand at 930.159 kb on - strand at 930.159 kb on - strand at 930.189 kb on + strand at 930.190 kb on - strand at 930.318 kb on - strand, within Ga0059261_0891 at 930.410 kb on - strand, within Ga0059261_0891 at 930.425 kb on + strand, within Ga0059261_0891 at 930.425 kb on + strand, within Ga0059261_0891 at 930.426 kb on - strand, within Ga0059261_0891 at 930.486 kb on + strand at 930.487 kb on - strand at 930.487 kb on - strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.517 kb on - strand at 930.517 kb on - strand at 930.517 kb on - strand at 930.729 kb on - strand at 930.729 kb on - strand at 930.740 kb on + strand at 930.859 kb on - strand at 930.860 kb on + strand at 930.860 kb on + strand at 930.860 kb on + strand at 930.860 kb on + strand at 930.861 kb on - strand at 930.861 kb on - strand at 930.861 kb on - strand at 930.928 kb on + strand, within Ga0059261_0893 at 930.929 kb on - strand, within Ga0059261_0893 at 930.929 kb on - strand, within Ga0059261_0893 at 931.050 kb on - strand, within Ga0059261_0893 at 931.064 kb on + strand, within Ga0059261_0893 at 931.064 kb on + strand, within Ga0059261_0893 at 931.575 kb on - strand, within Ga0059261_0893 at 931.575 kb on - strand, within Ga0059261_0893 at 931.625 kb on + strand, within Ga0059261_0893 at 931.625 kb on + strand, within Ga0059261_0893 at 931.626 kb on - strand, within Ga0059261_0893 at 931.626 kb on - strand, within Ga0059261_0893 at 931.626 kb on - strand, within Ga0059261_0893 at 931.626 kb on - strand, within Ga0059261_0893 at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.225 kb on + strand at 932.225 kb on + strand at 932.225 kb on + strand at 932.225 kb on + strand at 932.226 kb on - strand at 932.226 kb on - strand at 932.226 kb on - strand at 932.235 kb on + strand at 932.241 kb on + strand at 932.242 kb on - strand at 932.242 kb on - strand at 932.295 kb on + strand at 932.296 kb on - strand at 932.320 kb on + strand, within Ga0059261_0894 at 932.320 kb on + strand, within Ga0059261_0894 at 932.320 kb on + strand, within Ga0059261_0894 at 932.321 kb on - strand, within Ga0059261_0894 at 932.343 kb on - strand, within Ga0059261_0894 at 932.410 kb on + strand, within Ga0059261_0894 at 932.410 kb on + strand, within Ga0059261_0894 at 932.411 kb on - strand, within Ga0059261_0894 at 932.411 kb on - strand, within Ga0059261_0894 at 932.411 kb on - strand, within Ga0059261_0894 at 932.567 kb on - strand, within Ga0059261_0894 at 932.567 kb on - strand, within Ga0059261_0894 at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.802 kb on + strand, within Ga0059261_0895 at 932.802 kb on + strand, within Ga0059261_0895 at 932.803 kb on - strand, within Ga0059261_0895 at 932.803 kb on - strand, within Ga0059261_0895 at 932.803 kb on - strand at 932.803 kb on - strand, within Ga0059261_0895 at 932.841 kb on - strand, within Ga0059261_0895 at 932.841 kb on - strand, within Ga0059261_0895 at 933.018 kb on + strand, within Ga0059261_0895 at 933.018 kb on + strand, within Ga0059261_0895 at 933.019 kb on - strand, within Ga0059261_0895 at 933.179 kb on + strand at 933.180 kb on - strand at 933.180 kb on - strand at 933.180 kb on - strand at 933.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 929,819 - Ga0059261_0889 0.71 -1.6 929,819 - +0.1 929,819 - Ga0059261_0889 0.71 -0.5 929,819 - Ga0059261_0889 0.71 -0.7 929,959 + -0.7 929,959 + +0.1 929,959 + -0.0 929,960 - -0.4 929,960 - +0.0 930,076 + Ga0059261_0890 0.61 -1.4 930,076 + Ga0059261_0890 0.61 -0.1 930,076 + Ga0059261_0890 0.61 +0.1 930,098 + Ga0059261_0890 0.71 -0.6 930,098 + Ga0059261_0890 0.71 -0.5 930,099 - Ga0059261_0890 0.72 -1.2 930,106 + Ga0059261_0890 0.75 +0.2 930,106 + Ga0059261_0890 0.75 -0.7 930,106 + Ga0059261_0890 0.75 -0.6 930,106 + Ga0059261_0890 0.75 -1.3 930,106 + Ga0059261_0890 0.75 -0.5 930,106 + Ga0059261_0890 0.75 -0.2 930,107 - Ga0059261_0890 0.75 -0.6 930,107 - Ga0059261_0890 0.75 +0.0 930,107 - Ga0059261_0890 0.75 -0.3 930,107 - Ga0059261_0890 0.75 +0.4 930,158 + +0.4 930,159 - -0.1 930,159 - -0.1 930,189 + +0.1 930,190 - +0.1 930,318 - Ga0059261_0891 0.41 -0.2 930,410 - Ga0059261_0891 0.68 -0.6 930,425 + Ga0059261_0891 0.72 +0.2 930,425 + Ga0059261_0891 0.72 +0.2 930,426 - Ga0059261_0891 0.73 -0.7 930,486 + -0.3 930,487 - -1.4 930,487 - +0.2 930,516 + +0.2 930,516 + +0.0 930,516 + +0.6 930,516 + +0.1 930,516 + +0.1 930,517 - +0.6 930,517 - -0.2 930,517 - -0.0 930,729 - -0.8 930,729 - +0.3 930,740 + -0.1 930,859 - -3.6 930,860 + -3.3 930,860 + -2.4 930,860 + -2.9 930,860 + -0.3 930,861 - -2.7 930,861 - -0.2 930,861 - -2.1 930,928 + Ga0059261_0893 0.14 -1.3 930,929 - Ga0059261_0893 0.14 -3.7 930,929 - Ga0059261_0893 0.14 -0.8 931,050 - Ga0059261_0893 0.22 -1.8 931,064 + Ga0059261_0893 0.23 -2.7 931,064 + Ga0059261_0893 0.23 -2.8 931,575 - Ga0059261_0893 0.58 +0.4 931,575 - Ga0059261_0893 0.58 -2.7 931,625 + Ga0059261_0893 0.62 -1.4 931,625 + Ga0059261_0893 0.62 -1.6 931,626 - Ga0059261_0893 0.62 -1.0 931,626 - Ga0059261_0893 0.62 -2.7 931,626 - Ga0059261_0893 0.62 -1.3 931,626 - Ga0059261_0893 0.62 -2.6 932,184 + -1.8 932,184 + -3.4 932,184 + -0.4 932,184 + -2.2 932,184 + -0.1 932,184 + -1.4 932,184 + -0.4 932,184 + -0.3 932,184 + -1.4 932,184 + -1.9 932,184 + -1.3 932,184 + -2.4 932,184 + -2.8 932,185 - -1.8 932,185 - -2.8 932,185 - -1.3 932,185 - +0.4 932,185 - +0.2 932,185 - -1.5 932,185 - -2.3 932,185 - +0.3 932,185 - -0.8 932,185 - -1.4 932,225 + -1.7 932,225 + -1.3 932,225 + -2.4 932,225 + -1.7 932,226 - -0.8 932,226 - -1.1 932,226 - -0.1 932,235 + -0.1 932,241 + -0.1 932,242 - +0.4 932,242 - -0.3 932,295 + +1.0 932,296 - +0.7 932,320 + Ga0059261_0894 0.13 -0.7 932,320 + Ga0059261_0894 0.13 +0.1 932,320 + Ga0059261_0894 0.13 +0.7 932,321 - Ga0059261_0894 0.13 +0.1 932,343 - Ga0059261_0894 0.19 -0.1 932,410 + Ga0059261_0894 0.35 -0.8 932,410 + Ga0059261_0894 0.35 -1.9 932,411 - Ga0059261_0894 0.36 -0.3 932,411 - Ga0059261_0894 0.36 +0.4 932,411 - Ga0059261_0894 0.36 -0.3 932,567 - Ga0059261_0894 0.74 -0.6 932,567 - Ga0059261_0894 0.74 +1.2 932,721 + +0.0 932,721 + +0.6 932,721 + -0.5 932,721 + -0.2 932,721 + +0.7 932,721 + -0.0 932,721 + -1.7 932,721 + -0.7 932,721 + +0.6 932,722 - -0.4 932,722 - +0.8 932,722 - -0.3 932,722 - -0.4 932,722 - +0.0 932,722 - +0.1 932,722 - +0.7 932,722 - +0.6 932,722 - +0.6 932,802 + Ga0059261_0895 0.18 -0.5 932,802 + Ga0059261_0895 0.18 -0.8 932,803 - Ga0059261_0895 0.18 +0.0 932,803 - Ga0059261_0895 0.18 -0.8 932,803 - -0.3 932,803 - Ga0059261_0895 0.18 +0.6 932,841 - Ga0059261_0895 0.28 +0.1 932,841 - Ga0059261_0895 0.28 +0.1 933,018 + Ga0059261_0895 0.74 -0.0 933,018 + Ga0059261_0895 0.74 +0.7 933,019 - Ga0059261_0895 0.75 +0.4 933,179 + +2.7 933,180 - +1.1 933,180 - -0.1 933,180 - -0.8 933,180 - +0.1
Or see this region's nucleotide sequence