Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0509

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0507 and Ga0059261_0508 overlap by 4 nucleotidesGa0059261_0508 and Ga0059261_0509 overlap by 4 nucleotidesGa0059261_0509 and Ga0059261_0510 overlap by 7 nucleotides Ga0059261_0507: Ga0059261_0507 - maleylacetoacetate isomerase, at 506,689 to 507,327 _0507 Ga0059261_0508: Ga0059261_0508 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 507,324 to 508,022 _0508 Ga0059261_0509: Ga0059261_0509 - gentisate 1,2-dioxygenase, at 508,019 to 509,071 _0509 Ga0059261_0510: Ga0059261_0510 - Beta-glucosidase-related glycosidases, at 509,065 to 510,756 _0510 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2 3at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.105 kb on - strand, within Ga0059261_0507at 507.105 kb on - strand, within Ga0059261_0507at 507.192 kb on - strand, within Ga0059261_0507at 507.192 kb on - strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.243 kb on - strand, within Ga0059261_0507at 507.243 kb on - strand, within Ga0059261_0507at 507.282 kb on - strandat 507.282 kb on - strandat 507.302 kb on + strandat 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strandat 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strandat 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.463 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.718 kb on + strandat 507.718 kb on + strand, within Ga0059261_0508at 507.718 kb on + strand, within Ga0059261_0508at 507.718 kb on + strand, within Ga0059261_0508at 507.719 kb on - strand, within Ga0059261_0508at 507.719 kb on - strand, within Ga0059261_0508at 507.719 kb on - strand, within Ga0059261_0508at 507.719 kb on - strandat 507.719 kb on - strand, within Ga0059261_0508at 507.793 kb on + strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.820 kb on + strand, within Ga0059261_0508at 507.846 kb on + strand, within Ga0059261_0508at 507.847 kb on - strand, within Ga0059261_0508at 507.925 kb on + strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.988 kb on + strandat 507.988 kb on + strandat 507.989 kb on - strandat 507.989 kb on - strandat 507.989 kb on - strandat 508.399 kb on - strand, within Ga0059261_0509at 508.405 kb on - strand, within Ga0059261_0509at 508.476 kb on + strand, within Ga0059261_0509at 508.476 kb on + strandat 508.476 kb on + strand, within Ga0059261_0509at 508.476 kb on + strand, within Ga0059261_0509at 508.477 kb on - strand, within Ga0059261_0509at 508.477 kb on - strand, within Ga0059261_0509at 508.696 kb on + strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.699 kb on - strand, within Ga0059261_0509at 508.699 kb on - strand, within Ga0059261_0509at 508.699 kb on - strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.795 kb on - strand, within Ga0059261_0509at 508.795 kb on - strand, within Ga0059261_0509at 508.902 kb on + strand, within Ga0059261_0509at 508.903 kb on - strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 509.022 kb on + strandat 509.022 kb on + strandat 509.023 kb on - strandat 509.023 kb on - strandat 509.023 kb on - strandat 509.180 kb on + strandat 509.180 kb on + strandat 509.180 kb on + strandat 509.181 kb on - strandat 509.190 kb on + strandat 509.191 kb on - strandat 509.191 kb on - strandat 509.191 kb on - strandat 509.191 kb on - strandat 509.191 kb on - strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.192 kb on + strandat 509.193 kb on - strandat 509.193 kb on - strandat 509.193 kb on - strandat 509.193 kb on - strandat 509.193 kb on - strandat 509.222 kb on + strandat 509.222 kb on + strandat 509.222 kb on + strandat 509.222 kb on + strandat 509.222 kb on + strandat 509.222 kb on + strandat 509.222 kb on + strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.363 kb on + strand, within Ga0059261_0510at 509.363 kb on + strand, within Ga0059261_0510at 509.363 kb on + strand, within Ga0059261_0510at 509.363 kb on + strandat 509.364 kb on - strand, within Ga0059261_0510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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507,104 + Ga0059261_0507 0.65 +0.7
507,104 + Ga0059261_0507 0.65 +0.9
507,104 + Ga0059261_0507 0.65 -1.0
507,104 + Ga0059261_0507 0.65 +0.0
507,104 + Ga0059261_0507 0.65 +0.6
507,104 + Ga0059261_0507 0.65 +1.2
507,105 - Ga0059261_0507 0.65 -0.5
507,105 - Ga0059261_0507 0.65 +0.0
507,192 - Ga0059261_0507 0.79 -0.9
507,192 - Ga0059261_0507 0.79 -0.2
507,242 + Ga0059261_0507 0.87 +0.2
507,242 + Ga0059261_0507 0.87 -0.8
507,242 + Ga0059261_0507 0.87 -0.2
507,242 + Ga0059261_0507 0.87 +0.1
507,243 - Ga0059261_0507 0.87 +0.1
507,243 - Ga0059261_0507 0.87 +0.2
507,282 - -0.2
507,282 - +0.2
507,302 + -0.4
507,436 + Ga0059261_0508 0.16 -0.6
507,436 + Ga0059261_0508 0.16 -1.3
507,436 + Ga0059261_0508 0.16 +0.1
507,436 + Ga0059261_0508 0.16 +1.8
507,436 + Ga0059261_0508 0.16 +0.4
507,436 + Ga0059261_0508 0.16 +0.3
507,436 + Ga0059261_0508 0.16 -0.3
507,436 + +0.7
507,436 + Ga0059261_0508 0.16 +0.5
507,436 + +0.1
507,437 - Ga0059261_0508 0.16 +0.1
507,437 - Ga0059261_0508 0.16 -0.1
507,437 - Ga0059261_0508 0.16 +0.7
507,437 - Ga0059261_0508 0.16 +0.1
507,437 - Ga0059261_0508 0.16 +0.2
507,437 - Ga0059261_0508 0.16 +0.1
507,437 - Ga0059261_0508 0.16 +0.3
507,437 - Ga0059261_0508 0.16 +0.2
507,437 - Ga0059261_0508 0.16 -0.1
507,437 - Ga0059261_0508 0.16 +0.7
507,437 - Ga0059261_0508 0.16 +0.8
507,463 + Ga0059261_0508 0.20 +0.7
507,478 + Ga0059261_0508 0.22 +0.5
507,478 + Ga0059261_0508 0.22 +1.1
507,478 + Ga0059261_0508 0.22 +0.4
507,478 + Ga0059261_0508 0.22 +0.5
507,478 + Ga0059261_0508 0.22 -0.6
507,478 + Ga0059261_0508 0.22 +0.2
507,479 - Ga0059261_0508 0.22 -0.1
507,479 - Ga0059261_0508 0.22 +0.4
507,479 - Ga0059261_0508 0.22 -0.1
507,479 - Ga0059261_0508 0.22 +1.0
507,479 - Ga0059261_0508 0.22 +0.3
507,479 - Ga0059261_0508 0.22 +0.3
507,479 - Ga0059261_0508 0.22 +0.0
507,479 - Ga0059261_0508 0.22 +0.2
507,718 + +3.7
507,718 + Ga0059261_0508 0.56 -0.2
507,718 + Ga0059261_0508 0.56 -0.1
507,718 + Ga0059261_0508 0.56 +0.5
507,719 - Ga0059261_0508 0.57 +0.5
507,719 - Ga0059261_0508 0.57 +0.6
507,719 - Ga0059261_0508 0.57 -0.3
507,719 - +1.2
507,719 - Ga0059261_0508 0.57 +0.3
507,793 + Ga0059261_0508 0.67 -2.0
507,794 - Ga0059261_0508 0.67 +0.8
507,794 - Ga0059261_0508 0.67 -1.0
507,794 - Ga0059261_0508 0.67 -0.2
507,794 - Ga0059261_0508 0.67 +0.3
507,820 + Ga0059261_0508 0.71 +0.2
507,846 + Ga0059261_0508 0.75 -0.1
507,847 - Ga0059261_0508 0.75 +0.7
507,925 + Ga0059261_0508 0.86 +0.0
507,926 - Ga0059261_0508 0.86 -0.2
507,926 - Ga0059261_0508 0.86 -0.2
507,926 - Ga0059261_0508 0.86 -1.4
507,926 - Ga0059261_0508 0.86 +1.3
507,988 + -0.3
507,988 + +0.5
507,989 - -0.5
507,989 - +0.2
507,989 - +0.3
508,399 - Ga0059261_0509 0.36 -1.6
508,405 - Ga0059261_0509 0.37 -0.2
508,476 + Ga0059261_0509 0.43 -0.1
508,476 + +1.7
508,476 + Ga0059261_0509 0.43 -0.1
508,476 + Ga0059261_0509 0.43 +0.6
508,477 - Ga0059261_0509 0.43 +0.6
508,477 - Ga0059261_0509 0.43 -0.6
508,696 + Ga0059261_0509 0.64 -0.3
508,697 - Ga0059261_0509 0.64 -0.5
508,697 - Ga0059261_0509 0.64 -0.7
508,697 - Ga0059261_0509 0.64 -0.4
508,697 - Ga0059261_0509 0.64 -0.1
508,697 - Ga0059261_0509 0.64 +1.0
508,698 + Ga0059261_0509 0.64 -0.2
508,698 + Ga0059261_0509 0.64 -0.9
508,698 + Ga0059261_0509 0.64 -0.0
508,698 + Ga0059261_0509 0.64 -0.3
508,698 + Ga0059261_0509 0.64 +0.8
508,698 + Ga0059261_0509 0.64 +0.4
508,699 - Ga0059261_0509 0.65 +0.1
508,699 - Ga0059261_0509 0.65 +1.2
508,699 - Ga0059261_0509 0.65 -0.2
508,794 + Ga0059261_0509 0.74 +0.2
508,794 + Ga0059261_0509 0.74 +0.0
508,794 + Ga0059261_0509 0.74 +0.4
508,794 + Ga0059261_0509 0.74 -0.3
508,794 + Ga0059261_0509 0.74 -0.5
508,795 - Ga0059261_0509 0.74 +0.1
508,795 - Ga0059261_0509 0.74 +0.3
508,902 + Ga0059261_0509 0.84 -0.1
508,903 - Ga0059261_0509 0.84 +0.4
508,920 + Ga0059261_0509 0.86 -0.3
508,920 + Ga0059261_0509 0.86 +0.1
508,920 + Ga0059261_0509 0.86 -0.8
508,920 + Ga0059261_0509 0.86 +0.6
508,920 + Ga0059261_0509 0.86 +0.2
508,920 + Ga0059261_0509 0.86 -0.4
508,920 + Ga0059261_0509 0.86 +0.3
508,920 + Ga0059261_0509 0.86 +1.1
508,920 + Ga0059261_0509 0.86 -0.2
508,920 + Ga0059261_0509 0.86 -0.0
508,921 - Ga0059261_0509 0.86 +0.8
508,921 - Ga0059261_0509 0.86 -0.2
508,921 - Ga0059261_0509 0.86 -0.8
508,921 - Ga0059261_0509 0.86 +0.2
508,921 - Ga0059261_0509 0.86 +0.5
508,921 - Ga0059261_0509 0.86 +0.1
508,921 - Ga0059261_0509 0.86 +0.2
508,921 - Ga0059261_0509 0.86 -0.6
509,022 + -0.7
509,022 + -0.5
509,023 - -0.7
509,023 - -0.4
509,023 - -0.2
509,180 + -0.1
509,180 + +0.6
509,180 + -0.1
509,181 - +0.8
509,190 + -0.6
509,191 - -1.2
509,191 - -0.6
509,191 - -0.4
509,191 - +0.8
509,191 - -1.4
509,192 + -0.3
509,192 + +0.5
509,192 + +0.7
509,192 + -1.0
509,192 + -1.2
509,192 + -0.3
509,192 + -0.0
509,192 + +0.2
509,192 + +0.7
509,192 + +0.5
509,192 + -0.4
509,193 - -0.6
509,193 - -0.8
509,193 - +0.4
509,193 - +0.0
509,193 - -0.0
509,222 + -0.3
509,222 + +0.1
509,222 + +0.6
509,222 + +0.1
509,222 + +1.5
509,222 + -0.5
509,222 + -1.3
509,223 - +0.4
509,223 - +0.4
509,223 - -0.0
509,223 - -0.3
509,223 - -1.7
509,223 - +0.2
509,223 - +3.3
509,363 + Ga0059261_0510 0.18 +0.9
509,363 + Ga0059261_0510 0.18 -0.7
509,363 + Ga0059261_0510 0.18 -0.0
509,363 + +0.7
509,364 - Ga0059261_0510 0.18 -0.2

Or see this region's nucleotide sequence