Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0290

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0289 and Ga0059261_0290 are separated by 63 nucleotidesGa0059261_0290 and Ga0059261_0291 are separated by 64 nucleotidesGa0059261_0291 and Ga0059261_0292 are separated by 6 nucleotides Ga0059261_0289: Ga0059261_0289 - thiamine biosynthesis protein ThiS, at 274,143 to 275,153 _0289 Ga0059261_0290: Ga0059261_0290 - 3-dehydroquinate dehydratase (EC 4.2.1.10), at 275,217 to 275,651 _0290 Ga0059261_0291: Ga0059261_0291 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 275,716 to 276,201 _0291 Ga0059261_0292: Ga0059261_0292 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 276,208 to 277,572 _0292 Position (kb) 275 276Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 275.179 kb on - strandat 275.179 kb on - strandat 275.180 kb on + strandat 275.180 kb on + strandat 275.180 kb on + strandat 275.180 kb on + strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.226 kb on - strandat 275.232 kb on + strandat 275.232 kb on + strandat 275.232 kb on + strandat 275.232 kb on + strandat 275.232 kb on + strandat 275.232 kb on + strandat 275.233 kb on - strandat 275.233 kb on - strandat 275.233 kb on - strandat 275.233 kb on - strandat 275.233 kb on - strandat 275.233 kb on - strandat 275.236 kb on + strandat 275.287 kb on - strand, within Ga0059261_0290at 275.454 kb on + strand, within Ga0059261_0290at 275.454 kb on + strand, within Ga0059261_0290at 275.455 kb on - strandat 275.455 kb on - strand, within Ga0059261_0290at 275.455 kb on - strand, within Ga0059261_0290at 275.479 kb on - strand, within Ga0059261_0290at 275.479 kb on - strand, within Ga0059261_0290at 275.486 kb on + strand, within Ga0059261_0290at 275.523 kb on - strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.565 kb on + strand, within Ga0059261_0290at 275.566 kb on - strand, within Ga0059261_0290at 275.566 kb on - strand, within Ga0059261_0290at 275.566 kb on - strand, within Ga0059261_0290at 275.616 kb on + strandat 275.616 kb on + strandat 275.616 kb on + strandat 275.616 kb on + strandat 275.616 kb on + strandat 275.616 kb on + strandat 275.665 kb on + strandat 275.665 kb on + strandat 275.667 kb on + strandat 275.667 kb on + strandat 275.667 kb on + strandat 275.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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275,179 - -1.1
275,179 - -0.5
275,180 + +2.7
275,180 + -0.1
275,180 + +0.3
275,180 + +0.1
275,181 - -1.7
275,181 - -2.3
275,181 - -0.6
275,181 - -1.3
275,181 - -0.7
275,181 - -1.2
275,181 - -0.5
275,226 - -1.5
275,232 + -0.6
275,232 + -3.0
275,232 + -2.8
275,232 + -4.7
275,232 + -4.9
275,232 + -1.8
275,233 - -1.6
275,233 - -0.7
275,233 - -2.4
275,233 - -1.8
275,233 - -2.6
275,233 - -2.3
275,236 + -1.8
275,287 - Ga0059261_0290 0.16 -2.8
275,454 + Ga0059261_0290 0.54 -2.0
275,454 + Ga0059261_0290 0.54 -1.8
275,455 - -0.3
275,455 - Ga0059261_0290 0.55 -1.6
275,455 - Ga0059261_0290 0.55 -2.9
275,479 - Ga0059261_0290 0.60 -0.6
275,479 - Ga0059261_0290 0.60 -1.3
275,486 + Ga0059261_0290 0.62 -3.5
275,523 - Ga0059261_0290 0.70 -1.6
275,565 + Ga0059261_0290 0.80 -2.9
275,565 + Ga0059261_0290 0.80 -2.2
275,565 + Ga0059261_0290 0.80 -1.8
275,565 + Ga0059261_0290 0.80 -3.3
275,565 + Ga0059261_0290 0.80 -2.6
275,565 + Ga0059261_0290 0.80 -2.6
275,565 + Ga0059261_0290 0.80 -1.9
275,566 - Ga0059261_0290 0.80 -2.9
275,566 - Ga0059261_0290 0.80 -1.9
275,566 - Ga0059261_0290 0.80 -2.0
275,616 + -1.5
275,616 + -3.6
275,616 + -0.3
275,616 + -3.7
275,616 + -0.3
275,616 + -3.8
275,665 + +0.3
275,665 + -0.2
275,667 + +0.3
275,667 + +0.7
275,667 + +0.7
275,667 + -0.0

Or see this region's nucleotide sequence