Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0256

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0255 and Ga0059261_0256 are separated by 5 nucleotidesGa0059261_0256 and Ga0059261_0257 are separated by 1 nucleotidesGa0059261_0257 and Ga0059261_0258 are separated by 157 nucleotides Ga0059261_0255: Ga0059261_0255 - SurA N-terminal domain/PPIC-type PPIASE domain, at 244,361 to 246,334 _0255 Ga0059261_0256: Ga0059261_0256 - anthranilate synthase component I, non-proteobacterial lineages, at 246,340 to 247,866 _0256 Ga0059261_0257: Ga0059261_0257 - hypothetical protein, at 247,868 to 248,278 _0257 Ga0059261_0258: Ga0059261_0258 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 248,436 to 250,019 _0258 Position (kb) 246 247 248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.366 kb on - strandat 246.366 kb on - strandat 246.366 kb on - strandat 246.669 kb on + strandat 246.670 kb on - strand, within Ga0059261_0256at 246.670 kb on - strand, within Ga0059261_0256at 246.670 kb on - strand, within Ga0059261_0256at 246.677 kb on + strand, within Ga0059261_0256at 246.739 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.046 kb on - strand, within Ga0059261_0256at 247.046 kb on - strand, within Ga0059261_0256at 247.058 kb on + strand, within Ga0059261_0256at 247.075 kb on + strand, within Ga0059261_0256at 247.075 kb on + strand, within Ga0059261_0256at 247.076 kb on - strand, within Ga0059261_0256at 247.076 kb on - strand, within Ga0059261_0256at 247.092 kb on + strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.156 kb on + strand, within Ga0059261_0256at 247.195 kb on + strandat 247.195 kb on + strand, within Ga0059261_0256at 247.196 kb on - strand, within Ga0059261_0256at 247.196 kb on - strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.454 kb on - strand, within Ga0059261_0256at 247.468 kb on + strand, within Ga0059261_0256at 247.468 kb on + strand, within Ga0059261_0256at 247.468 kb on + strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.636 kb on + strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.654 kb on + strand, within Ga0059261_0256at 247.654 kb on + strand, within Ga0059261_0256at 247.655 kb on - strand, within Ga0059261_0256at 247.771 kb on + strandat 247.771 kb on + strandat 247.771 kb on + strandat 247.772 kb on - strandat 247.864 kb on + strandat 247.864 kb on + strandat 247.864 kb on + strandat 247.864 kb on + strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.869 kb on + strandat 247.869 kb on + strandat 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 248.097 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.173 kb on - strand, within Ga0059261_0257at 248.173 kb on - strand, within Ga0059261_0257at 248.173 kb on - strand, within Ga0059261_0257at 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.314 kb on + strandat 248.314 kb on + strandat 248.315 kb on - strandat 248.315 kb on - strandat 248.332 kb on + strandat 248.332 kb on + strandat 248.333 kb on - strandat 248.391 kb on + strandat 248.408 kb on + strandat 248.409 kb on - strandat 248.446 kb on + strandat 248.446 kb on + strandat 248.446 kb on + strandat 248.446 kb on + strandat 248.447 kb on - strandat 248.625 kb on + strand, within Ga0059261_0258at 248.625 kb on + strand, within Ga0059261_0258at 248.625 kb on + strand, within Ga0059261_0258at 248.626 kb on - strand, within Ga0059261_0258at 248.626 kb on - strand, within Ga0059261_0258at 248.723 kb on + strand, within Ga0059261_0258at 248.723 kb on + strand, within Ga0059261_0258

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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246,365 + -2.8
246,365 + -2.6
246,365 + -3.2
246,365 + -2.8
246,365 + -2.5
246,365 + -0.1
246,366 - -2.6
246,366 - -1.8
246,366 - -3.3
246,669 + -1.1
246,670 - Ga0059261_0256 0.22 -2.8
246,670 - Ga0059261_0256 0.22 -0.6
246,670 - Ga0059261_0256 0.22 -3.5
246,677 + Ga0059261_0256 0.22 -2.2
246,739 + Ga0059261_0256 0.26 -4.0
247,045 + Ga0059261_0256 0.46 -1.5
247,045 + Ga0059261_0256 0.46 -3.2
247,045 + Ga0059261_0256 0.46 -3.0
247,045 + Ga0059261_0256 0.46 -2.2
247,046 - Ga0059261_0256 0.46 -2.7
247,046 - Ga0059261_0256 0.46 -3.8
247,058 + Ga0059261_0256 0.47 -2.2
247,075 + Ga0059261_0256 0.48 -2.5
247,075 + Ga0059261_0256 0.48 -1.8
247,076 - Ga0059261_0256 0.48 -1.1
247,076 - Ga0059261_0256 0.48 -3.0
247,092 + Ga0059261_0256 0.49 -2.4
247,093 - Ga0059261_0256 0.49 -2.7
247,093 - Ga0059261_0256 0.49 -1.5
247,093 - Ga0059261_0256 0.49 -2.7
247,093 - Ga0059261_0256 0.49 -3.1
247,093 - Ga0059261_0256 0.49 -3.5
247,156 + Ga0059261_0256 0.53 -3.5
247,195 + -0.6
247,195 + Ga0059261_0256 0.56 -2.5
247,196 - Ga0059261_0256 0.56 -2.8
247,196 - Ga0059261_0256 0.56 -2.2
247,453 + Ga0059261_0256 0.73 -1.4
247,453 + Ga0059261_0256 0.73 -2.9
247,453 + Ga0059261_0256 0.73 -0.7
247,453 + Ga0059261_0256 0.73 -3.4
247,453 + Ga0059261_0256 0.73 -3.4
247,454 - Ga0059261_0256 0.73 -3.6
247,468 + Ga0059261_0256 0.74 -3.0
247,468 + Ga0059261_0256 0.74 -2.0
247,468 + Ga0059261_0256 0.74 -2.4
247,469 - Ga0059261_0256 0.74 -4.6
247,469 - Ga0059261_0256 0.74 -1.3
247,469 - Ga0059261_0256 0.74 -2.9
247,469 - Ga0059261_0256 0.74 -2.5
247,636 + Ga0059261_0256 0.85 -1.8
247,637 - Ga0059261_0256 0.85 -3.7
247,637 - Ga0059261_0256 0.85 -1.8
247,637 - Ga0059261_0256 0.85 -1.2
247,637 - Ga0059261_0256 0.85 -2.4
247,654 + Ga0059261_0256 0.86 -0.6
247,654 + Ga0059261_0256 0.86 -2.8
247,655 - Ga0059261_0256 0.86 -1.3
247,771 + -3.2
247,771 + -3.5
247,771 + -3.3
247,772 - -3.8
247,864 + +0.1
247,864 + -0.3
247,864 + -0.1
247,864 + -0.2
247,865 - +0.2
247,865 - -0.3
247,865 - -0.7
247,865 - +0.1
247,865 - +0.5
247,869 + +0.0
247,869 + -1.1
247,968 + Ga0059261_0257 0.24 +0.2
247,968 + Ga0059261_0257 0.24 +0.4
247,968 + Ga0059261_0257 0.24 +1.2
247,968 + Ga0059261_0257 0.24 +0.6
247,968 + Ga0059261_0257 0.24 +0.6
247,968 + Ga0059261_0257 0.24 -0.1
248,097 + Ga0059261_0257 0.56 +0.9
248,172 + Ga0059261_0257 0.74 +0.1
248,172 + Ga0059261_0257 0.74 -0.1
248,172 + Ga0059261_0257 0.74 +0.0
248,172 + Ga0059261_0257 0.74 +0.7
248,173 - Ga0059261_0257 0.74 +0.5
248,173 - Ga0059261_0257 0.74 +0.2
248,173 - Ga0059261_0257 0.74 -0.3
248,310 + +0.3
248,310 + +0.5
248,310 + +0.4
248,310 + +0.3
248,310 + +0.1
248,310 + -0.4
248,310 + +1.4
248,310 + +0.1
248,310 + +0.5
248,310 + -0.3
248,310 + +0.1
248,310 + -0.5
248,310 + +0.8
248,310 + +0.5
248,310 + +0.6
248,310 + +0.9
248,310 + -0.2
248,311 - +0.7
248,311 - +0.4
248,311 - +0.3
248,311 - +0.2
248,311 - -0.8
248,311 - -0.4
248,314 + +0.8
248,314 + +0.2
248,315 - -0.2
248,315 - +0.4
248,332 + +0.3
248,332 + +0.7
248,333 - +0.4
248,391 + +0.1
248,408 + -0.2
248,409 - -4.2
248,446 + +0.2
248,446 + +0.4
248,446 + -1.5
248,446 + -0.7
248,447 - -4.3
248,625 + Ga0059261_0258 0.12 -0.9
248,625 + Ga0059261_0258 0.12 -0.8
248,625 + Ga0059261_0258 0.12 -1.0
248,626 - Ga0059261_0258 0.12 -1.6
248,626 - Ga0059261_0258 0.12 -2.2
248,723 + Ga0059261_0258 0.18 -2.0
248,723 + Ga0059261_0258 0.18 -1.4

Or see this region's nucleotide sequence