Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0255

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0253 and Ga0059261_0254 are separated by 40 nucleotidesGa0059261_0254 and Ga0059261_0255 are separated by 121 nucleotidesGa0059261_0255 and Ga0059261_0256 are separated by 5 nucleotides Ga0059261_0253: Ga0059261_0253 - hypothetical protein, at 243,021 to 243,452 _0253 Ga0059261_0254: Ga0059261_0254 - triosephosphate isomerase (EC 5.3.1.1), at 243,493 to 244,239 _0254 Ga0059261_0255: Ga0059261_0255 - SurA N-terminal domain/PPIC-type PPIASE domain, at 244,361 to 246,334 _0255 Ga0059261_0256: Ga0059261_0256 - anthranilate synthase component I, non-proteobacterial lineages, at 246,340 to 247,866 _0256 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 244.261 kb on + strandat 244.262 kb on - strandat 244.277 kb on + strandat 244.327 kb on + strandat 244.328 kb on - strandat 244.676 kb on + strand, within Ga0059261_0255at 244.794 kb on + strand, within Ga0059261_0255at 244.795 kb on - strand, within Ga0059261_0255at 244.795 kb on - strandat 244.904 kb on + strand, within Ga0059261_0255at 244.904 kb on + strand, within Ga0059261_0255at 244.905 kb on - strand, within Ga0059261_0255at 244.973 kb on + strandat 245.036 kb on + strand, within Ga0059261_0255at 245.057 kb on + strandat 245.157 kb on - strand, within Ga0059261_0255at 245.158 kb on + strandat 245.159 kb on - strand, within Ga0059261_0255at 245.231 kb on - strand, within Ga0059261_0255at 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.365 kb on + strandat 246.366 kb on - strandat 246.366 kb on - strandat 246.366 kb on - strandat 246.669 kb on + strandat 246.670 kb on - strand, within Ga0059261_0256at 246.670 kb on - strand, within Ga0059261_0256at 246.670 kb on - strand, within Ga0059261_0256at 246.677 kb on + strand, within Ga0059261_0256at 246.739 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.045 kb on + strand, within Ga0059261_0256at 247.046 kb on - strand, within Ga0059261_0256at 247.046 kb on - strand, within Ga0059261_0256at 247.058 kb on + strand, within Ga0059261_0256at 247.075 kb on + strand, within Ga0059261_0256at 247.075 kb on + strand, within Ga0059261_0256at 247.076 kb on - strand, within Ga0059261_0256at 247.076 kb on - strand, within Ga0059261_0256at 247.092 kb on + strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.093 kb on - strand, within Ga0059261_0256at 247.156 kb on + strand, within Ga0059261_0256at 247.195 kb on + strandat 247.195 kb on + strand, within Ga0059261_0256at 247.196 kb on - strand, within Ga0059261_0256at 247.196 kb on - strand, within Ga0059261_0256

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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244,261 + -0.4
244,262 - -0.1
244,277 + -0.1
244,327 + -0.7
244,328 - -1.9
244,676 + Ga0059261_0255 0.16 -2.0
244,794 + Ga0059261_0255 0.22 -1.6
244,795 - Ga0059261_0255 0.22 -0.0
244,795 - -0.3
244,904 + Ga0059261_0255 0.28 +0.5
244,904 + Ga0059261_0255 0.28 +0.1
244,905 - Ga0059261_0255 0.28 -0.6
244,973 + +0.1
245,036 + Ga0059261_0255 0.34 -1.3
245,057 + -0.6
245,157 - Ga0059261_0255 0.40 -1.8
245,158 + +0.4
245,159 - Ga0059261_0255 0.40 -0.4
245,231 - Ga0059261_0255 0.44 -1.6
246,365 + -2.8
246,365 + -2.6
246,365 + -3.2
246,365 + -2.8
246,365 + -2.5
246,365 + -0.1
246,366 - -2.6
246,366 - -1.8
246,366 - -3.3
246,669 + -1.1
246,670 - Ga0059261_0256 0.22 -2.8
246,670 - Ga0059261_0256 0.22 -0.6
246,670 - Ga0059261_0256 0.22 -3.5
246,677 + Ga0059261_0256 0.22 -2.2
246,739 + Ga0059261_0256 0.26 -4.0
247,045 + Ga0059261_0256 0.46 -1.5
247,045 + Ga0059261_0256 0.46 -3.2
247,045 + Ga0059261_0256 0.46 -3.0
247,045 + Ga0059261_0256 0.46 -2.2
247,046 - Ga0059261_0256 0.46 -2.7
247,046 - Ga0059261_0256 0.46 -3.8
247,058 + Ga0059261_0256 0.47 -2.2
247,075 + Ga0059261_0256 0.48 -2.5
247,075 + Ga0059261_0256 0.48 -1.8
247,076 - Ga0059261_0256 0.48 -1.1
247,076 - Ga0059261_0256 0.48 -3.0
247,092 + Ga0059261_0256 0.49 -2.4
247,093 - Ga0059261_0256 0.49 -2.7
247,093 - Ga0059261_0256 0.49 -1.5
247,093 - Ga0059261_0256 0.49 -2.7
247,093 - Ga0059261_0256 0.49 -3.1
247,093 - Ga0059261_0256 0.49 -3.5
247,156 + Ga0059261_0256 0.53 -3.5
247,195 + -0.6
247,195 + Ga0059261_0256 0.56 -2.5
247,196 - Ga0059261_0256 0.56 -2.8
247,196 - Ga0059261_0256 0.56 -2.2

Or see this region's nucleotide sequence