Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0180 and Ga0059261_0181 are separated by 78 nucleotides Ga0059261_0181 and Ga0059261_0182 overlap by 4 nucleotides
Ga0059261_0180: Ga0059261_0180 - outer membrane protein assembly complex, YaeT protein, at 162,935 to 165,706
_0180
Ga0059261_0181: Ga0059261_0181 - Predicted membrane-associated Zn-dependent proteases 1, at 165,785 to 166,918
_0181
Ga0059261_0182: Ga0059261_0182 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 166,915 to 168,072
_0182
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 165.898 kb on + strand at 165.945 kb on + strand at 165.946 kb on - strand, within Ga0059261_0181 at 165.946 kb on - strand, within Ga0059261_0181 at 165.946 kb on - strand, within Ga0059261_0181 at 165.946 kb on - strand, within Ga0059261_0181 at 166.032 kb on - strand, within Ga0059261_0181 at 166.032 kb on - strand, within Ga0059261_0181 at 166.124 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.261 kb on - strand, within Ga0059261_0181 at 166.348 kb on + strand, within Ga0059261_0181 at 166.348 kb on + strand, within Ga0059261_0181 at 166.377 kb on + strand, within Ga0059261_0181 at 166.377 kb on + strand, within Ga0059261_0181 at 166.704 kb on + strand, within Ga0059261_0181 at 166.705 kb on - strand, within Ga0059261_0181 at 166.705 kb on - strand, within Ga0059261_0181 at 166.705 kb on - strand, within Ga0059261_0181 at 166.830 kb on + strand at 166.830 kb on + strand at 166.831 kb on - strand at 166.831 kb on - strand at 166.831 kb on - strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.891 kb on - strand at 166.891 kb on - strand at 166.891 kb on - strand at 166.891 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 165,898 + -2.3 165,945 + -1.3 165,946 - Ga0059261_0181 0.14 -2.1 165,946 - Ga0059261_0181 0.14 -1.0 165,946 - Ga0059261_0181 0.14 -2.0 165,946 - Ga0059261_0181 0.14 -0.0 166,032 - Ga0059261_0181 0.22 +0.5 166,032 - Ga0059261_0181 0.22 -0.8 166,124 - Ga0059261_0181 0.30 -1.2 166,158 - Ga0059261_0181 0.33 -2.0 166,158 - Ga0059261_0181 0.33 -2.2 166,158 - Ga0059261_0181 0.33 -2.6 166,158 - Ga0059261_0181 0.33 -1.4 166,158 - Ga0059261_0181 0.33 -1.9 166,158 - Ga0059261_0181 0.33 -0.9 166,261 - Ga0059261_0181 0.42 +0.3 166,348 + Ga0059261_0181 0.50 +0.1 166,348 + Ga0059261_0181 0.50 -1.6 166,377 + Ga0059261_0181 0.52 -1.8 166,377 + Ga0059261_0181 0.52 -0.2 166,704 + Ga0059261_0181 0.81 -1.0 166,705 - Ga0059261_0181 0.81 -3.0 166,705 - Ga0059261_0181 0.81 -1.9 166,705 - Ga0059261_0181 0.81 -1.0 166,830 + -0.5 166,830 + -1.1 166,831 - -1.8 166,831 - -1.3 166,831 - -1.5 166,890 + -1.3 166,890 + +1.1 166,890 + -1.5 166,890 + -1.3 166,890 + +0.1 166,890 + -1.1 166,890 + +0.7 166,890 + -1.8 166,890 + -0.9 166,890 + -1.3 166,891 - -1.1 166,891 - -1.9 166,891 - -0.5 166,891 - +0.1
Or see this region's nucleotide sequence