Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0154

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0152 and Ga0059261_0153 overlap by 4 nucleotidesGa0059261_0153 and Ga0059261_0154 are separated by 173 nucleotidesGa0059261_0154 and Ga0059261_0155 are separated by 137 nucleotidesGa0059261_0155 and Ga0059261_0156 are separated by 112 nucleotides Ga0059261_0152: Ga0059261_0152 - Protein of unknown function (DUF2794), at 143,512 to 143,853 _0152 Ga0059261_0153: Ga0059261_0153 - Serine acetyltransferase, at 143,850 to 144,548 _0153 Ga0059261_0154: Ga0059261_0154 - Predicted permeases, at 144,722 to 145,486 _0154 Ga0059261_0155: Ga0059261_0155 - peroxiredoxin, at 145,624 to 146,187 _0155 Ga0059261_0156: Ga0059261_0156 - alkyl hydroperoxide reductase subunit F, at 146,300 to 147,877 _0156 Position (kb) 144 145 146Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 143.729 kb on + strandat 143.729 kb on + strand, within Ga0059261_0152at 143.729 kb on + strand, within Ga0059261_0152at 143.730 kb on - strand, within Ga0059261_0152at 143.730 kb on - strand, within Ga0059261_0152at 143.730 kb on - strand, within Ga0059261_0152at 143.766 kb on - strand, within Ga0059261_0152at 143.766 kb on - strand, within Ga0059261_0152at 143.977 kb on + strand, within Ga0059261_0153at 143.978 kb on - strand, within Ga0059261_0153at 143.978 kb on - strand, within Ga0059261_0153at 143.978 kb on - strand, within Ga0059261_0153at 144.002 kb on - strand, within Ga0059261_0153at 144.576 kb on - strandat 144.576 kb on - strandat 144.576 kb on - strandat 144.643 kb on + strandat 144.643 kb on + strandat 144.643 kb on + strandat 144.643 kb on + strandat 144.644 kb on - strandat 144.644 kb on - strandat 144.644 kb on - strandat 144.644 kb on - strandat 144.694 kb on + strandat 144.694 kb on + strandat 144.695 kb on - strandat 144.695 kb on - strandat 144.695 kb on - strandat 144.822 kb on + strand, within Ga0059261_0154at 144.822 kb on + strand, within Ga0059261_0154at 144.822 kb on + strand, within Ga0059261_0154at 144.937 kb on + strand, within Ga0059261_0154at 144.938 kb on - strand, within Ga0059261_0154at 144.938 kb on - strand, within Ga0059261_0154at 144.938 kb on - strand, within Ga0059261_0154at 144.938 kb on - strand, within Ga0059261_0154at 144.938 kb on - strand, within Ga0059261_0154at 145.007 kb on + strand, within Ga0059261_0154at 145.007 kb on + strand, within Ga0059261_0154at 145.008 kb on - strand, within Ga0059261_0154at 145.008 kb on - strand, within Ga0059261_0154at 145.008 kb on - strand, within Ga0059261_0154at 145.008 kb on - strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.058 kb on + strand, within Ga0059261_0154at 145.059 kb on - strand, within Ga0059261_0154at 145.059 kb on - strand, within Ga0059261_0154at 145.059 kb on - strand, within Ga0059261_0154at 145.059 kb on - strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.079 kb on + strand, within Ga0059261_0154at 145.080 kb on - strand, within Ga0059261_0154at 145.080 kb on - strand, within Ga0059261_0154at 145.080 kb on - strand, within Ga0059261_0154at 145.080 kb on - strand, within Ga0059261_0154at 145.080 kb on - strand, within Ga0059261_0154at 145.080 kb on - strand, within Ga0059261_0154at 145.241 kb on + strandat 145.241 kb on + strand, within Ga0059261_0154at 145.241 kb on + strand, within Ga0059261_0154at 145.241 kb on + strand, within Ga0059261_0154at 145.242 kb on - strand, within Ga0059261_0154at 145.242 kb on - strand, within Ga0059261_0154at 145.242 kb on - strand, within Ga0059261_0154at 145.242 kb on - strand, within Ga0059261_0154at 145.242 kb on - strand, within Ga0059261_0154at 145.405 kb on - strand, within Ga0059261_0154at 145.405 kb on - strand, within Ga0059261_0154at 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.461 kb on - strandat 145.470 kb on - strandat 145.573 kb on + strandat 145.573 kb on + strandat 145.573 kb on + strandat 145.574 kb on - strandat 145.574 kb on - strandat 145.576 kb on - strandat 145.606 kb on + strandat 145.738 kb on + strand, within Ga0059261_0155at 145.738 kb on + strand, within Ga0059261_0155at 145.739 kb on - strand, within Ga0059261_0155at 145.796 kb on - strand, within Ga0059261_0155at 145.826 kb on + strand, within Ga0059261_0155at 145.827 kb on - strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.829 kb on - strand, within Ga0059261_0155at 145.829 kb on - strandat 145.829 kb on - strand, within Ga0059261_0155at 145.875 kb on + strand, within Ga0059261_0155at 145.876 kb on - strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.905 kb on - strand, within Ga0059261_0155at 145.906 kb on + strandat 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 146.092 kb on + strand, within Ga0059261_0155at 146.093 kb on - strand, within Ga0059261_0155at 146.093 kb on - strand, within Ga0059261_0155at 146.186 kb on - strandat 146.186 kb on - strandat 146.201 kb on + strandat 146.202 kb on - strandat 146.202 kb on - strandat 146.273 kb on + strandat 146.274 kb on - strandat 146.336 kb on + strandat 146.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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143,729 + -0.3
143,729 + Ga0059261_0152 0.63 -0.5
143,729 + Ga0059261_0152 0.63 -1.4
143,730 - Ga0059261_0152 0.64 +0.2
143,730 - Ga0059261_0152 0.64 +1.0
143,730 - Ga0059261_0152 0.64 +0.7
143,766 - Ga0059261_0152 0.74 -0.0
143,766 - Ga0059261_0152 0.74 +0.5
143,977 + Ga0059261_0153 0.18 -0.5
143,978 - Ga0059261_0153 0.18 -3.3
143,978 - Ga0059261_0153 0.18 -1.8
143,978 - Ga0059261_0153 0.18 -2.3
144,002 - Ga0059261_0153 0.22 -0.7
144,576 - -2.6
144,576 - -2.1
144,576 - -2.6
144,643 + -3.1
144,643 + -1.7
144,643 + -3.3
144,643 + +0.1
144,644 - -1.2
144,644 - -3.4
144,644 - -2.6
144,644 - -3.4
144,694 + -4.3
144,694 + -1.6
144,695 - -2.9
144,695 - -4.0
144,695 - -2.8
144,822 + Ga0059261_0154 0.13 -3.6
144,822 + Ga0059261_0154 0.13 -3.0
144,822 + Ga0059261_0154 0.13 -4.2
144,937 + Ga0059261_0154 0.28 -1.3
144,938 - Ga0059261_0154 0.28 -3.3
144,938 - Ga0059261_0154 0.28 -3.7
144,938 - Ga0059261_0154 0.28 -3.5
144,938 - Ga0059261_0154 0.28 -2.5
144,938 - Ga0059261_0154 0.28 -3.9
145,007 + Ga0059261_0154 0.37 -0.8
145,007 + Ga0059261_0154 0.37 -4.2
145,008 - Ga0059261_0154 0.37 -0.4
145,008 - Ga0059261_0154 0.37 -1.5
145,008 - Ga0059261_0154 0.37 -3.1
145,008 - Ga0059261_0154 0.37 -3.4
145,058 + Ga0059261_0154 0.44 -3.3
145,058 + Ga0059261_0154 0.44 -4.4
145,058 + Ga0059261_0154 0.44 -2.8
145,058 + Ga0059261_0154 0.44 -2.4
145,058 + Ga0059261_0154 0.44 -2.4
145,058 + Ga0059261_0154 0.44 -2.6
145,058 + Ga0059261_0154 0.44 -2.6
145,058 + Ga0059261_0154 0.44 -2.8
145,058 + Ga0059261_0154 0.44 -3.2
145,058 + Ga0059261_0154 0.44 -2.7
145,058 + Ga0059261_0154 0.44 -1.5
145,059 - Ga0059261_0154 0.44 -1.7
145,059 - Ga0059261_0154 0.44 -2.3
145,059 - Ga0059261_0154 0.44 -1.4
145,059 - Ga0059261_0154 0.44 -0.3
145,079 + Ga0059261_0154 0.47 -3.6
145,079 + Ga0059261_0154 0.47 -1.3
145,079 + Ga0059261_0154 0.47 -3.0
145,079 + Ga0059261_0154 0.47 -1.1
145,079 + Ga0059261_0154 0.47 -3.2
145,079 + Ga0059261_0154 0.47 -2.1
145,079 + Ga0059261_0154 0.47 -3.3
145,080 - Ga0059261_0154 0.47 -2.2
145,080 - Ga0059261_0154 0.47 -2.4
145,080 - Ga0059261_0154 0.47 -2.0
145,080 - Ga0059261_0154 0.47 -1.1
145,080 - Ga0059261_0154 0.47 -1.6
145,080 - Ga0059261_0154 0.47 -2.6
145,241 + +0.1
145,241 + Ga0059261_0154 0.68 -0.5
145,241 + Ga0059261_0154 0.68 -2.3
145,241 + Ga0059261_0154 0.68 -0.9
145,242 - Ga0059261_0154 0.68 -2.6
145,242 - Ga0059261_0154 0.68 -2.7
145,242 - Ga0059261_0154 0.68 -3.0
145,242 - Ga0059261_0154 0.68 -2.9
145,242 - Ga0059261_0154 0.68 -4.5
145,405 - Ga0059261_0154 0.89 -1.8
145,405 - Ga0059261_0154 0.89 -3.5
145,460 + -2.5
145,460 + -1.1
145,460 + -2.8
145,460 + -1.7
145,460 + -1.3
145,460 + -3.5
145,461 - -2.2
145,470 - -2.0
145,573 + -1.8
145,573 + +0.6
145,573 + -0.9
145,574 - +1.4
145,574 - -0.4
145,576 - -0.1
145,606 + -0.7
145,738 + Ga0059261_0155 0.20 -0.3
145,738 + Ga0059261_0155 0.20 +0.1
145,739 - Ga0059261_0155 0.20 +0.4
145,796 - Ga0059261_0155 0.30 -0.4
145,826 + Ga0059261_0155 0.36 -0.2
145,827 - Ga0059261_0155 0.36 +0.2
145,828 + Ga0059261_0155 0.36 +1.2
145,828 + Ga0059261_0155 0.36 -0.7
145,828 + Ga0059261_0155 0.36 +0.3
145,828 + Ga0059261_0155 0.36 +1.0
145,828 + Ga0059261_0155 0.36 -1.5
145,828 + Ga0059261_0155 0.36 +0.4
145,828 + Ga0059261_0155 0.36 -0.2
145,828 + Ga0059261_0155 0.36 -0.2
145,829 - Ga0059261_0155 0.36 +0.3
145,829 - +1.1
145,829 - Ga0059261_0155 0.36 -0.2
145,875 + Ga0059261_0155 0.45 +0.2
145,876 - Ga0059261_0155 0.45 +0.1
145,903 + Ga0059261_0155 0.49 +0.2
145,903 + Ga0059261_0155 0.49 +0.1
145,903 + Ga0059261_0155 0.49 +1.4
145,903 + Ga0059261_0155 0.49 -1.3
145,904 - Ga0059261_0155 0.50 -0.2
145,904 - Ga0059261_0155 0.50 -0.9
145,904 - Ga0059261_0155 0.50 -0.4
145,904 - Ga0059261_0155 0.50 -0.0
145,904 - Ga0059261_0155 0.50 +1.0
145,905 - Ga0059261_0155 0.50 +0.2
145,906 + +0.5
145,906 + Ga0059261_0155 0.50 +0.1
145,906 + Ga0059261_0155 0.50 +0.4
145,906 + Ga0059261_0155 0.50 -0.6
145,906 + Ga0059261_0155 0.50 -0.1
145,906 + Ga0059261_0155 0.50 +1.4
145,906 + Ga0059261_0155 0.50 +0.1
145,907 - Ga0059261_0155 0.50 +0.4
145,907 - Ga0059261_0155 0.50 +1.1
145,907 - Ga0059261_0155 0.50 +0.4
145,907 - Ga0059261_0155 0.50 -0.7
145,907 - Ga0059261_0155 0.50 -2.0
145,907 - Ga0059261_0155 0.50 -0.4
145,907 - Ga0059261_0155 0.50 +0.5
145,908 + Ga0059261_0155 0.50 -0.8
145,908 + Ga0059261_0155 0.50 +0.2
145,908 + Ga0059261_0155 0.50 -1.5
145,908 + Ga0059261_0155 0.50 -1.7
145,908 + Ga0059261_0155 0.50 -0.3
145,908 + Ga0059261_0155 0.50 -0.0
145,908 + Ga0059261_0155 0.50 -1.3
145,909 - Ga0059261_0155 0.51 +1.1
145,909 - Ga0059261_0155 0.51 +1.4
145,909 - Ga0059261_0155 0.51 -0.1
145,909 - Ga0059261_0155 0.51 -2.0
146,092 + Ga0059261_0155 0.83 +0.5
146,093 - Ga0059261_0155 0.83 +1.1
146,093 - Ga0059261_0155 0.83 -1.1
146,186 - +0.0
146,186 - -0.4
146,201 + -0.5
146,202 - +1.3
146,202 - +0.3
146,273 + -0.6
146,274 - +0.4
146,336 + +0.8
146,337 - -0.5

Or see this region's nucleotide sequence