Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0101 and Ga0059261_0102 are separated by 49 nucleotides Ga0059261_0102 and Ga0059261_0103 are separated by 159 nucleotides Ga0059261_0103 and Ga0059261_0104 are separated by 148 nucleotides Ga0059261_0104 and Ga0059261_0105 are separated by 273 nucleotides
Ga0059261_0101: Ga0059261_0101 - Peptidase family M1, at 94,246 to 95,940
_0101
Ga0059261_0102: Ga0059261_0102 - endopeptidase La, at 95,990 to 98,383
_0102
Ga0059261_0103: Ga0059261_0103 - Bacterial nucleoid DNA-binding protein, at 98,543 to 98,815
_0103
Ga0059261_0104: Ga0059261_0104 - tRNA, at 98,964 to 99,038
_0104
Ga0059261_0105: Ga0059261_0105 - hypothetical protein, at 99,312 to 100,955
_0105
Position (kb) 95
96
97
98
99 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.990 kb on - strand, within Ga0059261_0101 at 94.991 kb on + strand, within Ga0059261_0101 at 94.991 kb on + strand, within Ga0059261_0101 at 94.992 kb on - strand, within Ga0059261_0101 at 94.992 kb on - strand, within Ga0059261_0101 at 95.207 kb on + strand, within Ga0059261_0101 at 95.207 kb on + strand, within Ga0059261_0101 at 95.207 kb on + strand, within Ga0059261_0101 at 95.208 kb on - strand, within Ga0059261_0101 at 95.208 kb on - strand, within Ga0059261_0101 at 95.229 kb on - strand, within Ga0059261_0101 at 95.255 kb on + strand, within Ga0059261_0101 at 95.256 kb on - strand, within Ga0059261_0101 at 95.386 kb on + strand, within Ga0059261_0101 at 95.387 kb on - strand, within Ga0059261_0101 at 95.435 kb on + strand, within Ga0059261_0101 at 95.436 kb on - strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.647 kb on + strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.648 kb on - strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.649 kb on + strand, within Ga0059261_0101 at 95.650 kb on - strand, within Ga0059261_0101 at 95.650 kb on - strand, within Ga0059261_0101 at 95.791 kb on + strand at 95.791 kb on + strand at 95.791 kb on + strand at 95.791 kb on + strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.792 kb on - strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.945 kb on + strand at 95.946 kb on - strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.947 kb on + strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.948 kb on - strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.985 kb on + strand at 95.986 kb on - strand at 95.986 kb on - strand at 95.986 kb on - strand at 96.002 kb on + strand at 96.002 kb on + strand at 96.002 kb on + strand at 96.002 kb on + strand at 96.003 kb on - strand at 96.235 kb on - strand, within Ga0059261_0102 at 96.606 kb on - strand, within Ga0059261_0102 at 96.653 kb on + strand, within Ga0059261_0102 at 96.654 kb on - strand, within Ga0059261_0102 at 96.654 kb on - strand, within Ga0059261_0102 at 96.656 kb on + strand, within Ga0059261_0102 at 96.656 kb on + strand, within Ga0059261_0102 at 96.656 kb on + strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.657 kb on - strand, within Ga0059261_0102 at 96.857 kb on + strand, within Ga0059261_0102 at 96.857 kb on + strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.858 kb on - strand, within Ga0059261_0102 at 96.950 kb on + strand, within Ga0059261_0102 at 96.951 kb on - strand, within Ga0059261_0102 at 96.951 kb on - strand at 96.951 kb on - strand at 96.951 kb on - strand, within Ga0059261_0102 at 96.951 kb on - strand, within Ga0059261_0102 at 97.132 kb on - strand, within Ga0059261_0102 at 97.132 kb on - strand, within Ga0059261_0102 at 97.132 kb on - strand, within Ga0059261_0102 at 97.169 kb on + strand, within Ga0059261_0102 at 97.169 kb on + strand, within Ga0059261_0102 at 97.169 kb on + strand at 97.169 kb on + strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.170 kb on - strand, within Ga0059261_0102 at 97.344 kb on - strand, within Ga0059261_0102 at 97.344 kb on - strand, within Ga0059261_0102 at 97.455 kb on - strand, within Ga0059261_0102 at 97.455 kb on - strand, within Ga0059261_0102 at 97.456 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.580 kb on + strand, within Ga0059261_0102 at 97.581 kb on - strand, within Ga0059261_0102 at 97.724 kb on + strand, within Ga0059261_0102 at 97.928 kb on + strand, within Ga0059261_0102 at 97.928 kb on + strand, within Ga0059261_0102 at 97.963 kb on + strand, within Ga0059261_0102 at 97.965 kb on + strand at 97.970 kb on - strand, within Ga0059261_0102 at 98.095 kb on + strand, within Ga0059261_0102 at 98.096 kb on - strand, within Ga0059261_0102 at 98.096 kb on - strand, within Ga0059261_0102 at 98.195 kb on + strand at 98.308 kb on - strand at 98.308 kb on - strand at 98.308 kb on - strand at 98.381 kb on + strand at 98.381 kb on + strand at 98.382 kb on - strand at 98.382 kb on - strand at 98.382 kb on - strand at 98.382 kb on - strand at 98.445 kb on + strand at 98.445 kb on + strand at 98.513 kb on + strand at 98.514 kb on - strand at 98.536 kb on + strand at 98.536 kb on + strand at 98.536 kb on + strand at 98.536 kb on + strand at 98.537 kb on - strand at 98.537 kb on - strand at 98.537 kb on - strand at 98.537 kb on - strand at 98.871 kb on + strand at 98.871 kb on + strand at 98.871 kb on + strand at 98.939 kb on + strand at 99.105 kb on + strand at 99.106 kb on - strand at 99.130 kb on + strand at 99.130 kb on + strand at 99.130 kb on + strand at 99.131 kb on - strand at 99.131 kb on - strand at 99.131 kb on - strand at 99.156 kb on + strand at 99.156 kb on + strand at 99.157 kb on - strand at 99.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 94,990 - Ga0059261_0101 0.44 +1.0 94,990 - Ga0059261_0101 0.44 +1.1 94,990 - Ga0059261_0101 0.44 +0.1 94,990 - Ga0059261_0101 0.44 -0.1 94,990 - Ga0059261_0101 0.44 -1.1 94,990 - Ga0059261_0101 0.44 +0.2 94,991 + Ga0059261_0101 0.44 -0.9 94,991 + Ga0059261_0101 0.44 -0.7 94,992 - Ga0059261_0101 0.44 -0.9 94,992 - Ga0059261_0101 0.44 -0.4 95,207 + Ga0059261_0101 0.57 -0.3 95,207 + Ga0059261_0101 0.57 +0.3 95,207 + Ga0059261_0101 0.57 +1.8 95,208 - Ga0059261_0101 0.57 -0.1 95,208 - Ga0059261_0101 0.57 +1.0 95,229 - Ga0059261_0101 0.58 -0.2 95,255 + Ga0059261_0101 0.60 -0.6 95,256 - Ga0059261_0101 0.60 +0.1 95,386 + Ga0059261_0101 0.67 +0.2 95,387 - Ga0059261_0101 0.67 -1.5 95,435 + Ga0059261_0101 0.70 +0.3 95,436 - Ga0059261_0101 0.70 -0.5 95,647 + Ga0059261_0101 0.83 +2.2 95,647 + -0.6 95,647 + Ga0059261_0101 0.83 -0.2 95,647 + Ga0059261_0101 0.83 -0.5 95,647 + Ga0059261_0101 0.83 +0.2 95,647 + Ga0059261_0101 0.83 -0.5 95,647 + Ga0059261_0101 0.83 +0.6 95,647 + Ga0059261_0101 0.83 -0.3 95,647 + Ga0059261_0101 0.83 -0.1 95,648 - Ga0059261_0101 0.83 -0.2 95,648 - Ga0059261_0101 0.83 -0.4 95,648 - Ga0059261_0101 0.83 +0.2 95,648 - Ga0059261_0101 0.83 +1.0 95,649 + Ga0059261_0101 0.83 -0.6 95,649 + Ga0059261_0101 0.83 -0.1 95,649 + Ga0059261_0101 0.83 +0.5 95,649 + Ga0059261_0101 0.83 +0.1 95,649 + Ga0059261_0101 0.83 +0.5 95,649 + Ga0059261_0101 0.83 -0.1 95,649 + Ga0059261_0101 0.83 +0.1 95,650 - Ga0059261_0101 0.83 +0.2 95,650 - Ga0059261_0101 0.83 +0.1 95,791 + -0.4 95,791 + +0.5 95,791 + +0.1 95,791 + +0.1 95,792 - +0.2 95,792 - -0.3 95,792 - +0.1 95,792 - +0.1 95,792 - +0.3 95,792 - -0.5 95,792 - +0.7 95,945 + +0.5 95,945 + -0.6 95,945 + -0.5 95,945 + +0.1 95,945 + -1.0 95,946 - -1.3 95,947 + -0.8 95,947 + -0.3 95,947 + -0.3 95,947 + -0.1 95,947 + -0.8 95,947 + -0.6 95,947 + -1.6 95,948 - -0.3 95,948 - -1.7 95,948 - -0.6 95,948 - -0.9 95,948 - -2.2 95,948 - -0.5 95,948 - -2.5 95,985 + -0.6 95,985 + -3.5 95,985 + +0.1 95,985 + -0.9 95,985 + -1.1 95,986 - -0.6 95,986 - -1.6 95,986 - -2.2 96,002 + -2.2 96,002 + -1.8 96,002 + -0.9 96,002 + -1.2 96,003 - -3.0 96,235 - Ga0059261_0102 0.10 -1.0 96,606 - Ga0059261_0102 0.26 -0.5 96,653 + Ga0059261_0102 0.28 -2.6 96,654 - Ga0059261_0102 0.28 -2.0 96,654 - Ga0059261_0102 0.28 +0.1 96,656 + Ga0059261_0102 0.28 -2.4 96,656 + Ga0059261_0102 0.28 -0.9 96,656 + Ga0059261_0102 0.28 -2.6 96,657 - Ga0059261_0102 0.28 -0.9 96,657 - Ga0059261_0102 0.28 -0.9 96,657 - Ga0059261_0102 0.28 -1.1 96,657 - Ga0059261_0102 0.28 -1.7 96,857 + Ga0059261_0102 0.36 -0.6 96,857 + Ga0059261_0102 0.36 -0.1 96,858 - Ga0059261_0102 0.36 -1.6 96,858 - Ga0059261_0102 0.36 -1.1 96,858 - Ga0059261_0102 0.36 -0.3 96,858 - Ga0059261_0102 0.36 -1.8 96,950 + Ga0059261_0102 0.40 -1.3 96,951 - Ga0059261_0102 0.40 -2.8 96,951 - +0.1 96,951 - -0.6 96,951 - Ga0059261_0102 0.40 -1.0 96,951 - Ga0059261_0102 0.40 -2.8 97,132 - Ga0059261_0102 0.48 -1.7 97,132 - Ga0059261_0102 0.48 -1.9 97,132 - Ga0059261_0102 0.48 -0.7 97,169 + Ga0059261_0102 0.49 -1.6 97,169 + Ga0059261_0102 0.49 -1.6 97,169 + +0.7 97,169 + Ga0059261_0102 0.49 -1.6 97,170 - Ga0059261_0102 0.49 -2.1 97,170 - Ga0059261_0102 0.49 -0.8 97,170 - Ga0059261_0102 0.49 -2.3 97,170 - Ga0059261_0102 0.49 -3.1 97,170 - Ga0059261_0102 0.49 +0.7 97,344 - Ga0059261_0102 0.57 -0.1 97,344 - Ga0059261_0102 0.57 -0.9 97,455 - Ga0059261_0102 0.61 -0.7 97,455 - Ga0059261_0102 0.61 +0.4 97,456 + Ga0059261_0102 0.61 -1.3 97,580 + Ga0059261_0102 0.66 -1.1 97,580 + Ga0059261_0102 0.66 -1.2 97,580 + Ga0059261_0102 0.66 -1.6 97,580 + Ga0059261_0102 0.66 -2.1 97,581 - Ga0059261_0102 0.66 -0.9 97,724 + Ga0059261_0102 0.72 -1.8 97,928 + Ga0059261_0102 0.81 -1.3 97,928 + Ga0059261_0102 0.81 -2.7 97,963 + Ga0059261_0102 0.82 -4.0 97,965 + -0.6 97,970 - Ga0059261_0102 0.83 -1.8 98,095 + Ga0059261_0102 0.88 -1.3 98,096 - Ga0059261_0102 0.88 -0.4 98,096 - Ga0059261_0102 0.88 -2.2 98,195 + -1.8 98,308 - +0.5 98,308 - +0.5 98,308 - +0.4 98,381 + -0.7 98,381 + +1.5 98,382 - -0.5 98,382 - -1.5 98,382 - -0.0 98,382 - -0.0 98,445 + -0.6 98,445 + -0.8 98,513 + -0.7 98,514 - -1.6 98,536 + -0.2 98,536 + +0.1 98,536 + -0.6 98,536 + -1.1 98,537 - -1.2 98,537 - -0.6 98,537 - -0.7 98,537 - -1.0 98,871 + +0.1 98,871 + +0.2 98,871 + +0.2 98,939 + +1.4 99,105 + +0.8 99,106 - -0.1 99,130 + -1.1 99,130 + -0.7 99,130 + -0.3 99,131 - +0.1 99,131 - -0.3 99,131 - +0.4 99,156 + -0.4 99,156 + +0.0 99,157 - -0.4 99,157 - -1.3
Or see this region's nucleotide sequence