Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0067

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0066 and Ga0059261_0067 are separated by 113 nucleotidesGa0059261_0067 and Ga0059261_0068 are separated by 100 nucleotides Ga0059261_0066: Ga0059261_0066 - ketol-acid reductoisomerase (EC 1.1.1.86), at 57,522 to 58,541 _0066 Ga0059261_0067: Ga0059261_0067 - acetolactate synthase, small subunit (EC 2.2.1.6), at 58,655 to 59,170 _0067 Ga0059261_0068: Ga0059261_0068 - acetolactate synthase, large subunit (EC 2.2.1.6), at 59,271 to 61,016 _0068 Position (kb) 58 59 60Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 58.560 kb on - strandat 58.560 kb on - strandat 58.562 kb on + strandat 58.562 kb on + strandat 58.563 kb on - strandat 58.563 kb on - strandat 58.818 kb on + strand, within Ga0059261_0067at 58.818 kb on + strand, within Ga0059261_0067at 58.819 kb on - strand, within Ga0059261_0067at 58.819 kb on - strand, within Ga0059261_0067at 59.032 kb on + strand, within Ga0059261_0067at 59.059 kb on + strand, within Ga0059261_0067at 59.060 kb on - strand, within Ga0059261_0067at 59.060 kb on - strand, within Ga0059261_0067at 59.060 kb on - strand, within Ga0059261_0067at 59.062 kb on + strand, within Ga0059261_0067at 59.062 kb on + strand, within Ga0059261_0067at 59.062 kb on + strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.065 kb on - strand, within Ga0059261_0067at 59.137 kb on + strandat 59.137 kb on + strandat 59.137 kb on + strandat 59.137 kb on + strandat 59.137 kb on + strandat 59.138 kb on - strandat 59.138 kb on - strandat 59.138 kb on - strandat 59.211 kb on + strandat 59.211 kb on + strandat 59.212 kb on - strandat 59.212 kb on - strandat 59.239 kb on + strandat 59.239 kb on + strandat 59.240 kb on - strandat 59.240 kb on - strandat 59.240 kb on - strandat 59.240 kb on - strandat 59.261 kb on + strandat 59.261 kb on + strandat 59.261 kb on + strandat 59.261 kb on + strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.488 kb on + strand, within Ga0059261_0068at 59.489 kb on - strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.590 kb on + strand, within Ga0059261_0068at 59.590 kb on + strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.747 kb on - strandat 60.109 kb on - strand, within Ga0059261_0068

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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58,560 - +0.8
58,560 - +0.5
58,562 + -2.8
58,562 + -3.1
58,563 - +1.4
58,563 - -0.7
58,818 + Ga0059261_0067 0.32 -2.4
58,818 + Ga0059261_0067 0.32 -3.6
58,819 - Ga0059261_0067 0.32 -2.1
58,819 - Ga0059261_0067 0.32 -2.3
59,032 + Ga0059261_0067 0.73 -2.6
59,059 + Ga0059261_0067 0.78 -3.5
59,060 - Ga0059261_0067 0.78 -2.1
59,060 - Ga0059261_0067 0.78 -2.8
59,060 - Ga0059261_0067 0.78 -4.1
59,062 + Ga0059261_0067 0.79 -0.6
59,062 + Ga0059261_0067 0.79 -3.0
59,062 + Ga0059261_0067 0.79 -3.6
59,063 - Ga0059261_0067 0.79 -3.0
59,063 - Ga0059261_0067 0.79 -5.1
59,063 - Ga0059261_0067 0.79 -4.2
59,063 - Ga0059261_0067 0.79 -2.8
59,064 + Ga0059261_0067 0.79 -2.2
59,064 + Ga0059261_0067 0.79 -2.2
59,064 + Ga0059261_0067 0.79 -0.6
59,064 + Ga0059261_0067 0.79 -1.3
59,065 - Ga0059261_0067 0.79 -3.5
59,137 + -3.4
59,137 + -2.3
59,137 + -2.4
59,137 + -1.3
59,137 + -1.9
59,138 - -4.2
59,138 - -0.6
59,138 - -1.9
59,211 + -2.8
59,211 + -1.5
59,212 - +1.2
59,212 - -0.1
59,239 + -2.6
59,239 + -1.3
59,240 - +1.3
59,240 - +0.7
59,240 - +0.1
59,240 - +1.5
59,261 + -3.3
59,261 + -0.9
59,261 + -2.0
59,261 + -1.8
59,262 - +2.7
59,262 - -0.9
59,262 - +0.6
59,262 - +0.3
59,262 - +1.7
59,262 - +0.1
59,262 - +0.0
59,262 - +0.3
59,488 + Ga0059261_0068 0.12 -0.8
59,489 - Ga0059261_0068 0.12 -4.2
59,588 + Ga0059261_0068 0.18 -3.0
59,588 + Ga0059261_0068 0.18 -1.8
59,588 + Ga0059261_0068 0.18 -2.8
59,588 + Ga0059261_0068 0.18 -1.6
59,588 + Ga0059261_0068 0.18 -2.1
59,589 - Ga0059261_0068 0.18 -2.1
59,589 - Ga0059261_0068 0.18 -1.9
59,589 - Ga0059261_0068 0.18 -3.2
59,589 - Ga0059261_0068 0.18 -0.6
59,590 + Ga0059261_0068 0.18 -3.9
59,590 + Ga0059261_0068 0.18 -4.6
59,591 - Ga0059261_0068 0.18 -2.6
59,591 - Ga0059261_0068 0.18 -3.6
59,591 - Ga0059261_0068 0.18 -3.3
59,591 - Ga0059261_0068 0.18 -1.4
59,747 - +0.7
60,109 - Ga0059261_0068 0.48 -0.9

Or see this region's nucleotide sequence