Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03594

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
3,746,973	+		CCNA_03593	0.29	-0.8
3,746,982	+		CCNA_03593	0.30	-0.3
3,746,997	+		CCNA_03593	0.31	-1.5
3,747,015	+		CCNA_03593	0.33	-0.3
3,747,015	+		CCNA_03593	0.33	-0.2
3,747,023	-		CCNA_03593	0.34	+0.2
3,747,046	-		CCNA_03593	0.36	+0.7
3,747,048	-		CCNA_03593	0.36	+0.6
3,747,051	+		CCNA_03593	0.36	-0.9
3,747,053	+		CCNA_03593	0.36	-0.2
3,747,072	+		CCNA_03593	0.38	-1.3
3,747,072	+		CCNA_03593	0.38	-1.5
3,747,072	+		CCNA_03593	0.38	+0.0
3,747,072	+		CCNA_03593	0.38	-2.2
3,747,072	+		CCNA_03593	0.38	-0.5
3,747,080	-		CCNA_03593	0.39	-0.5
3,747,080	-		CCNA_03593	0.39	-1.2
3,747,080	-		CCNA_03593	0.39	-1.2
3,747,114	-		CCNA_03593	0.42	+1.0
3,747,120	+		CCNA_03593	0.42	-0.5
3,747,138	-		CCNA_03593	0.44	-0.8
3,747,188	-		CCNA_03593	0.48	+0.0
3,747,193	-		CCNA_03593	0.49	-1.4
3,747,232	+		CCNA_03593	0.52	+1.7
3,747,232	+		CCNA_03593	0.52	-0.6
3,747,232	+		CCNA_03593	0.52	+0.5
3,747,266	+		CCNA_03593	0.55	-1.4
3,747,274	-		CCNA_03593	0.56	-1.7
3,747,274	-		CCNA_03593	0.56	-1.0
3,747,274	-		CCNA_03593	0.56	-1.0
3,747,292	+		CCNA_03593	0.58	+0.5
3,747,299	-		CCNA_03593	0.58	+0.2
3,747,314	-		CCNA_03593	0.60	+0.3
3,747,314	-		CCNA_03593	0.60	+0.8
3,747,353	+		CCNA_03593	0.63	-2.3
3,747,353	+		CCNA_03593	0.63	-1.0
3,747,361	-		CCNA_03593	0.64	+1.0
3,747,361	-		CCNA_03593	0.64	-1.0
3,747,388	-		CCNA_03593	0.66	-0.5
3,747,440	+		CCNA_03593	0.71	+0.3
3,747,497	+		CCNA_03593	0.76	+0.8
3,747,523	-		CCNA_03593	0.78	-0.7
3,747,609	+		CCNA_03593	0.86	-0.7
3,747,611	-		CCNA_03593	0.86	+0.7
3,747,614	+		CCNA_03593	0.86	-0.4
3,747,614	+		CCNA_03593	0.86	-0.5
3,747,622	-		CCNA_03593	0.87	+0.8
3,747,656	-		CCNA_03593	0.90	-1.5
3,747,656	-		CCNA_03593	0.90	-1.3
3,747,688	+				+0.8
3,747,734	-				-1.9
3,747,816	+				-2.0
3,747,824	-				-1.0
3,747,849	-				-1.3
3,747,902	+				-1.6
3,747,903	-				-0.8
3,747,918	-				-0.3
3,747,977	-				-0.3
3,747,977	-				+0.2
3,747,978	+				-0.6
3,747,979	+				-1.2
3,747,986	-				+0.8
3,748,044	+		CCNA_03594	0.17	-0.2
3,748,044	+		CCNA_03594	0.17	+1.0
3,748,044	+		CCNA_03594	0.17	-0.3
3,748,044	+		CCNA_03594	0.17	-0.3
3,748,044	+		CCNA_03594	0.17	-1.6
3,748,052	-		CCNA_03594	0.18	-3.2
3,748,052	-		CCNA_03594	0.18	-1.9
3,748,052	-		CCNA_03594	0.18	+1.8
3,748,052	-		CCNA_03594	0.18	-0.4
3,748,071	-		CCNA_03594	0.21	+1.6
3,748,071	-		CCNA_03594	0.21	-0.9
3,748,090	-		CCNA_03594	0.24	-0.9
3,748,121	+		CCNA_03594	0.28	-1.3
3,748,121	+		CCNA_03594	0.28	-1.0
3,748,129	-		CCNA_03594	0.29	-0.5
3,748,129	-		CCNA_03594	0.29	-0.7
3,748,148	-		CCNA_03594	0.32	+0.6
3,748,149	-		CCNA_03594	0.32	+0.2
3,748,159	-		CCNA_03594	0.33	-1.0
3,748,159	-		CCNA_03594	0.33	-2.1
3,748,159	-		CCNA_03594	0.33	+0.2
3,748,203	-		CCNA_03594	0.39	-0.2
3,748,276	+		CCNA_03594	0.50	-0.8
3,748,322	+		CCNA_03594	0.56	-1.8
3,748,322	+		CCNA_03594	0.56	-0.5
3,748,339	-		CCNA_03594	0.58	+0.5
3,748,367	+		CCNA_03594	0.62	+0.9
3,748,370	-		CCNA_03594	0.63	-1.0
3,748,375	-		CCNA_03594	0.63	+0.0
3,748,381	+		CCNA_03594	0.64	-0.8
3,748,459	+		CCNA_03594	0.75	-1.1
3,748,467	-		CCNA_03594	0.76	-1.2
3,748,502	-		CCNA_03594	0.81	+2.0
3,748,528	+		CCNA_03594	0.85	-0.5
3,748,542	-		CCNA_03594	0.87	-0.2
3,748,563	-		CCNA_03594	0.90	-0.8
3,748,574	+				-0.7
3,748,575	+				+0.8
3,748,577	+				+0.7
3,748,583	-				+0.0
3,748,583	-				+0.5
3,748,588	+				+0.5
3,748,599	+				-0.4
3,748,604	+				-0.2
3,748,607	-				-1.2
3,748,617	-				+0.2
3,748,631	+				-1.2
3,748,631	+				-1.8
3,748,631	+				+1.6
3,748,631	+				-0.5
3,748,631	+				+0.5
3,748,639	-				+0.3
3,748,639	-				+0.0
3,748,639	-				-1.5
3,748,639	-				+0.8
3,748,639	-				+1.3
3,748,639	-				-0.3
3,748,639	-				-1.5
3,748,639	-				+0.2
3,748,639	-				+2.6
3,748,640	-				-0.2
3,748,640	-				-0.2
3,748,665	-				-0.2
3,748,665	-				-0.4
3,748,665	-				+0.6
3,748,667	+				+0.7
3,748,667	+				-0.3
3,748,667	+				-0.9
3,748,667	+				-1.0
3,748,670	-				-1.6
3,748,675	-				+1.3
3,748,675	-				-0.1
3,748,697	+				-1.0
3,748,710	-		CCNA_03595	0.12	+1.6
3,748,710	-		CCNA_03595	0.12	+1.8
3,748,710	-		CCNA_03595	0.12	+1.4
3,748,719	-		CCNA_03595	0.13	-0.2
3,748,757	+		CCNA_03595	0.19	-3.2
3,748,762	+		CCNA_03595	0.20	-0.7
3,748,770	-		CCNA_03595	0.21	+0.4
3,748,812	-		CCNA_03595	0.28	+0.8
3,748,840	+		CCNA_03595	0.32	-0.3
3,748,913	-		CCNA_03595	0.43	-2.0
3,748,920	+		CCNA_03595	0.44	+0.8
3,748,930	+		CCNA_03595	0.46	-0.3
3,748,930	+		CCNA_03595	0.46	+0.6
3,748,930	+		CCNA_03595	0.46	-3.4
3,748,930	+		CCNA_03595	0.46	-1.0
3,748,930	+		CCNA_03595	0.46	-1.9
3,748,938	-		CCNA_03595	0.47	+0.3
3,748,938	-		CCNA_03595	0.47	-2.0
3,748,940	+		CCNA_03595	0.47	-0.1
3,748,945	+		CCNA_03595	0.48	+1.5
3,748,945	+		CCNA_03595	0.48	-0.4
3,748,946	-		CCNA_03595	0.48	+0.3
3,748,948	-		CCNA_03595	0.49	-0.3
3,748,958	-		CCNA_03595	0.50	-0.9
3,748,973	+		CCNA_03595	0.53	-0.5
3,748,997	-		CCNA_03595	0.56	+0.3
3,749,007	-		CCNA_03595	0.58	-0.9
3,749,033	-		CCNA_03595	0.62	-0.6
3,749,035	+		CCNA_03595	0.62	+0.6
3,749,053	+		CCNA_03595	0.65	-1.0
3,749,061	-		CCNA_03595	0.66	-0.8
3,749,066	+		CCNA_03595	0.67	-1.7
3,749,074	-		CCNA_03595	0.68	-0.1
3,749,074	-		CCNA_03595	0.68	+3.0
3,749,083	+		CCNA_03595	0.70	+0.3
3,749,096	-		CCNA_03595	0.72	-0.1
3,749,098	+		CCNA_03595	0.72	-0.0
3,749,106	-		CCNA_03595	0.73	+1.1
3,749,114	+		CCNA_03595	0.74	-0.7
3,749,122	-		CCNA_03595	0.76	-0.5
3,749,122	-		CCNA_03595	0.76	+0.0
3,749,122	-		CCNA_03595	0.76	+1.9
3,749,127	-		CCNA_03595	0.76	-0.5
3,749,208	+		CCNA_03595	0.89	-2.1
3,749,211	+		CCNA_03595	0.89	+0.3
3,749,219	-				+1.0
3,749,265	-				-1.5
3,749,268	+				-2.3
3,749,273	+				+0.2
3,749,282	-				+0.2
3,749,282	-				-0.7
3,749,282	-				-0.1
3,749,303	-				+2.8
3,749,309	-				-1.2
3,749,319	+				+0.0
3,749,326	-				-0.8
3,749,350	-				+0.5
3,749,403	-		CCNA_03596	0.20	+1.3
3,749,411	+		CCNA_03596	0.22	-0.8
3,749,419	-		CCNA_03596	0.24	+0.4
3,749,440	-		CCNA_03596	0.29	+0.7
3,749,441	+		CCNA_03596	0.29	+0.2
3,749,475	+		CCNA_03596	0.38	-1.2
3,749,485	-		CCNA_03596	0.40	+0.4
3,749,530	-		CCNA_03596	0.51	+0.6
3,749,530	-		CCNA_03596	0.51	+0.5
3,749,531	+		CCNA_03596	0.51	-1.2
3,749,532	+		CCNA_03596	0.52	+0.6
3,749,540	-		CCNA_03596	0.54	+0.3
3,749,564	-		CCNA_03596	0.60	+2.2
3,749,566	+		CCNA_03596	0.60	+1.6
3,749,571	+		CCNA_03596	0.61	-0.7
3,749,571	+		CCNA_03596	0.61	-0.4
3,749,571	+		CCNA_03596	0.61	-0.3
3,749,571	+		CCNA_03596	0.61	-0.5
3,749,571	+		CCNA_03596	0.61	-1.4
3,749,571	+		CCNA_03596	0.61	+0.7
3,749,571	+		CCNA_03596	0.61	-0.8
3,749,571	+		CCNA_03596	0.61	-0.0
3,749,571	+		CCNA_03596	0.61	-0.3
3,749,571	+		CCNA_03596	0.61	+0.3
3,749,571	+		CCNA_03596	0.61	-0.6
3,749,571	+		CCNA_03596	0.61	+0.9
3,749,571	+		CCNA_03596	0.61	-0.4
3,749,571	+		CCNA_03596	0.61	-0.8
3,749,571	+		CCNA_03596	0.61	+0.5
3,749,571	+		CCNA_03596	0.61	-0.0
3,749,571	+		CCNA_03596	0.61	-0.6
3,749,579	-		CCNA_03596	0.63	-1.1
3,749,579	-		CCNA_03596	0.63	-1.2
3,749,579	-		CCNA_03596	0.63	+0.6
3,749,579	-		CCNA_03596	0.63	-0.1
3,749,579	-		CCNA_03596	0.63	-0.0
3,749,579	-				+1.6
3,749,579	-		CCNA_03596	0.63	+0.9
3,749,579	-		CCNA_03596	0.63	+1.3
3,749,579	-		CCNA_03596	0.63	-1.0
3,749,579	-		CCNA_03596	0.63	+1.4
3,749,579	-		CCNA_03596	0.63	+0.1
3,749,579	-		CCNA_03596	0.63	-0.9
3,749,579	-		CCNA_03596	0.63	+1.6
3,749,579	-		CCNA_03596	0.63	+2.6
3,749,579	-		CCNA_03596	0.63	-0.6
3,749,579	-		CCNA_03596	0.63	+0.6
3,749,579	-		CCNA_03596	0.63	+1.5
3,749,603	+		CCNA_03596	0.69	-1.7
3,749,607	-		CCNA_03596	0.70	+1.0