Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03289

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
3,456,025	+		CCNA_03286	0.20	-1.0
3,456,065	-		CCNA_03286	0.26	-0.1
3,456,143	-		CCNA_03286	0.37	-0.1
3,456,145	+		CCNA_03286	0.38	-0.6
3,456,153	-		CCNA_03286	0.39	-0.6
3,456,154	-		CCNA_03286	0.39	-0.5
3,456,164	+		CCNA_03286	0.41	-1.1
3,456,172	-		CCNA_03286	0.42	-0.2
3,456,185	-		CCNA_03286	0.44	+0.7
3,456,231	+		CCNA_03286	0.50	-1.2
3,456,243	-		CCNA_03286	0.52	+0.4
3,456,254	-		CCNA_03286	0.54	+0.3
3,456,294	+		CCNA_03286	0.60	-0.6
3,456,450	+				+0.8
3,456,450	+				+0.7
3,456,451	+				+1.0
3,456,458	-				+0.9
3,456,528	-				+2.7
3,456,618	-		CCNA_03287	0.59	+2.5
3,456,619	-		CCNA_03287	0.60	+2.8
3,456,619	-		CCNA_03287	0.60	+3.2
3,456,619	-		CCNA_03287	0.60	+2.6
3,456,619	-		CCNA_03287	0.60	+2.5
3,456,620	-		CCNA_03287	0.60	+2.9
3,456,641	-		CCNA_03287	0.67	+2.5
3,456,641	-		CCNA_03287	0.67	+3.1
3,456,666	-		CCNA_03287	0.75	+2.5
3,456,787	-				-0.2
3,456,814	-				-0.6
3,456,825	+				+1.2
3,456,825	+				+0.4
3,456,825	+				+0.1
3,456,825	+				+1.1
3,456,825	+				-0.3
3,456,825	+				+0.4
3,456,825	+				+0.8
3,456,833	-				-0.2
3,456,833	-				-0.8
3,456,851	+		CCNA_03288	0.17	-0.4
3,456,893	-		CCNA_03288	0.40	-0.0
3,456,903	-		CCNA_03288	0.45	-1.4
3,456,916	-		CCNA_03288	0.52	-1.8
3,456,927	-		CCNA_03288	0.58	-0.8
3,456,945	-		CCNA_03288	0.67	-1.6
3,456,963	+		CCNA_03288	0.77	-1.7
3,456,990	+				-2.8
3,457,256	+		CCNA_03289	0.62	+2.2
3,457,256	+		CCNA_03289	0.62	+2.3
3,457,256	+		CCNA_03289	0.62	+2.0
3,457,264	+		CCNA_03289	0.64	+2.4
3,457,266	+		CCNA_03289	0.64	+2.5
3,457,266	+		CCNA_03289	0.64	+3.0
3,457,271	+		CCNA_03289	0.66	+2.7
3,457,276	+		CCNA_03289	0.67	+2.2
3,457,286	+		CCNA_03289	0.69	+2.6
3,457,306	+		CCNA_03289	0.74	+2.2
3,457,365	+		CCNA_03289	0.89	+3.2
3,457,365	+		CCNA_03289	0.89	+2.9
3,457,401	+				-1.3
3,457,401	+				-0.6
3,457,401	+				-0.3
3,457,401	+				+0.2
3,457,401	+				+0.9
3,457,401	+				+1.0
3,457,401	+				+0.7
3,457,401	+				-1.8
3,457,401	+				+0.3
3,457,401	+				-0.3
3,457,401	+				-1.2
3,457,401	+				+1.0
3,457,401	+				+0.5
3,457,409	-				-0.3
3,457,409	-				-1.7
3,457,409	-				+0.2
3,457,409	-				+0.1
3,457,409	-				-1.3
3,457,409	-				+1.2
3,457,409	-				-1.6
3,457,409	-				-1.0
3,457,409	-				-2.1
3,457,409	-				+0.2
3,457,409	-				-0.8
3,457,409	-				-1.0
3,457,412	+				-1.1
3,457,412	+				+0.2
3,457,412	+				+0.3
3,457,420	-				+1.4
3,457,420	-				-0.3
3,457,420	-				-0.5
3,457,421	+				-1.2
3,457,429	-				-1.8
3,457,429	-				+0.3
3,457,457	+				-0.5
3,457,500	+		CCNA_03290	0.18	+1.4
3,457,500	+		CCNA_03290	0.18	+0.9
3,457,508	-		CCNA_03290	0.19	-1.7
3,457,510	+		CCNA_03290	0.20	+2.8
3,457,544	-		CCNA_03290	0.27	-0.5
3,457,562	+		CCNA_03290	0.31	-0.7
3,457,565	-				+1.8
3,457,565	-		CCNA_03290	0.31	+1.2
3,457,570	-		CCNA_03290	0.32	-0.1
3,457,577	-		CCNA_03290	0.34	+0.1
3,457,603	+		CCNA_03290	0.39	-0.7
3,457,648	+		CCNA_03290	0.49	-1.5
3,457,648	+		CCNA_03290	0.49	+0.6
3,457,656	-		CCNA_03290	0.51	-0.4
3,457,656	-		CCNA_03290	0.51	-0.1
3,457,656	-		CCNA_03290	0.51	+0.7
3,457,669	+		CCNA_03290	0.53	-0.2
3,457,713	+		CCNA_03290	0.62	-0.4
3,457,771	+		CCNA_03290	0.75	-1.4
3,457,788	+		CCNA_03290	0.78	-0.5
3,457,812	+		CCNA_03290	0.83	-0.8
3,457,820	-		CCNA_03290	0.85	+0.3
3,457,831	-		CCNA_03290	0.87	-0.7
3,457,843	+		CCNA_03290	0.90	-1.6
3,457,858	-				-0.9
3,457,870	+				+1.3
3,457,870	+				-0.5
3,457,878	-				+0.4
3,457,878	-				+0.9
3,457,915	-				-0.0
3,457,929	+				+0.2
3,457,931	-				+0.6
3,457,954	-				+0.8
3,457,955	-				-0.4
3,457,959	+				+0.4
3,457,974	+				+0.0
3,457,982	-				-0.3
3,457,993	-				+0.4
3,458,011	+				+0.2
3,458,011	+				-0.6
3,458,019	-				-0.5
3,458,019	-				-2.1
3,458,076	+		CCNA_03291	0.13	+1.7
3,458,084	+		CCNA_03291	0.14	+0.4
3,458,099	+		CCNA_03291	0.15	+0.8
3,458,147	-		CCNA_03291	0.20	+1.5
3,458,241	-		CCNA_03291	0.29	-0.6
3,458,246	+		CCNA_03291	0.30	-0.5
3,458,273	+		CCNA_03291	0.32	-1.0
3,458,275	-		CCNA_03291	0.33	-0.8
3,458,278	+		CCNA_03291	0.33	-0.6
3,458,281	-		CCNA_03291	0.33	-0.2
3,458,286	-		CCNA_03291	0.34	-0.2
3,458,286	-		CCNA_03291	0.34	-0.6
3,458,286	-		CCNA_03291	0.34	-0.4
3,458,336	+		CCNA_03291	0.39	-2.1
3,458,344	-		CCNA_03291	0.40	-0.3
3,458,357	+		CCNA_03291	0.41	+1.3
3,458,363	+		CCNA_03291	0.41	-1.3
3,458,372	-		CCNA_03291	0.42	+1.0
3,458,384	-		CCNA_03291	0.44	-1.4
3,458,393	-		CCNA_03291	0.44	-0.2