Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03056

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
3,209,253	+		CCNA_03054	0.11	+1.0
3,209,261	-		CCNA_03054	0.12	+0.2
3,209,285	+		CCNA_03054	0.14	-0.3
3,209,285	+		CCNA_03054	0.14	+0.5
3,209,309	-		CCNA_03054	0.17	-0.1
3,209,310	+		CCNA_03054	0.17	+1.9
3,209,312	+		CCNA_03054	0.17	+0.5
3,209,312	+		CCNA_03054	0.17	+0.7
3,209,320	+		CCNA_03054	0.18	+0.5
3,209,320	+		CCNA_03054	0.18	+0.3
3,209,320	+		CCNA_03054	0.18	+1.0
3,209,320	+		CCNA_03054	0.18	+1.1
3,209,320	+		CCNA_03054	0.18	+1.2
3,209,320	+		CCNA_03054	0.18	+1.5
3,209,320	+		CCNA_03054	0.18	+0.4
3,209,320	+		CCNA_03054	0.18	+0.9
3,209,320	-		CCNA_03054	0.18	-0.2
3,209,328	-		CCNA_03054	0.19	+0.8
3,209,328	-		CCNA_03054	0.19	-1.0
3,209,332	+		CCNA_03054	0.19	+0.4
3,209,340	-		CCNA_03054	0.20	-0.5
3,209,472	+		CCNA_03054	0.34	+1.2
3,209,472	+		CCNA_03054	0.34	+0.4
3,209,472	+		CCNA_03054	0.34	+0.8
3,209,480	-		CCNA_03054	0.35	+0.5
3,209,480	-		CCNA_03054	0.35	-0.8
3,209,480	-		CCNA_03054	0.35	+2.3
3,209,480	-		CCNA_03054	0.35	-0.5
3,209,486	+		CCNA_03054	0.36	+0.5
3,209,495	+		CCNA_03054	0.37	+0.4
3,209,519	+		CCNA_03054	0.39	+0.4
3,209,532	+		CCNA_03054	0.41	+0.8
3,209,532	+		CCNA_03054	0.41	+0.2
3,209,540	-		CCNA_03054	0.42	-0.7
3,209,569	+		CCNA_03054	0.45	+1.0
3,209,577	-		CCNA_03054	0.45	+0.0
3,209,596	+		CCNA_03054	0.47	+1.2
3,209,596	+		CCNA_03054	0.47	+0.8
3,209,604	-		CCNA_03054	0.48	-0.1
3,209,606	+		CCNA_03054	0.49	+0.2
3,209,613	+		CCNA_03054	0.49	+1.4
3,209,613	+		CCNA_03054	0.49	+0.6
3,209,614	-		CCNA_03054	0.49	-0.6
3,209,642	-		CCNA_03054	0.52	-1.8
3,209,651	+		CCNA_03054	0.53	-0.3
3,209,651	+		CCNA_03054	0.53	-1.5
3,209,661	+		CCNA_03054	0.54	-0.3
3,209,686	-		CCNA_03054	0.57	-1.2
3,209,689	+		CCNA_03054	0.57	+1.6
3,209,696	+		CCNA_03054	0.58	+1.1
3,209,696	+		CCNA_03054	0.58	+0.3
3,209,719	-		CCNA_03054	0.61	+0.1
3,209,762	-		CCNA_03054	0.65	-0.2
3,209,786	+		CCNA_03054	0.68	+0.2
3,209,791	+		CCNA_03054	0.68	+1.3
3,209,799	-		CCNA_03054	0.69	-0.8
3,209,802	+		CCNA_03054	0.69	+0.9
3,209,806	+		CCNA_03054	0.70	-1.1
3,209,811	+		CCNA_03054	0.70	+0.6
3,209,811	+		CCNA_03054	0.70	+0.8
3,209,819	-		CCNA_03054	0.71	-1.1
3,209,819	-		CCNA_03054	0.71	+0.7
3,209,853	+		CCNA_03054	0.75	+0.7
3,209,932	+		CCNA_03054	0.83	+1.8
3,209,951	-		CCNA_03054	0.85	-1.3
3,209,961	-		CCNA_03054	0.86	-0.7
3,209,987	+		CCNA_03054	0.89	+1.1
3,209,995	-				-1.4
3,210,029	+				+1.4
3,210,029	+				+2.0
3,210,083	+				+1.3
3,210,107	+				+0.8
3,210,115	+				+0.8
3,210,163	+				-0.5
3,210,170	+				+0.3
3,210,175	+				-1.2
3,210,245	-				+0.7
3,210,245	-				+0.8
3,210,254	-				+0.7
3,210,254	-				-1.3
3,210,267	+				-0.7
3,210,267	+				-0.2
3,210,267	+				+0.1
3,210,275	-				-1.6
3,210,275	-				+1.0
3,210,275	-				-0.7
3,210,275	-				-0.1
3,210,275	-				+0.3
3,210,277	+				-1.6
3,210,285	-				+1.3
3,210,338	-		CCNA_03056	0.23	-0.7
3,210,382	+		CCNA_03056	0.34	+1.1
3,210,469	+				+2.3
3,210,496	+		CCNA_03056	0.63	-0.7
3,210,497	+		CCNA_03056	0.63	-1.0
3,210,504	-		CCNA_03056	0.65	-0.4
3,210,506	+		CCNA_03056	0.66	+0.7
3,210,563	-		CCNA_03056	0.80	-0.9
3,210,587	+		CCNA_03056	0.86	-1.6
3,210,595	-		CCNA_03056	0.88	-0.8
3,210,595	-		CCNA_03056	0.88	+0.2
3,210,606	-				+1.7
3,210,629	+				-0.2
3,210,647	+				-1.1
3,210,668	-				+1.5
3,210,753	+				+1.1
3,210,787	+		CCNA_03057	0.13	-0.8
3,210,800	-		CCNA_03057	0.17	+1.7
3,210,838	-		CCNA_03057	0.27	+0.4
3,210,838	-		CCNA_03057	0.27	+0.3
3,210,844	+		CCNA_03057	0.29	+0.1
3,210,857	+		CCNA_03057	0.33	-0.7
3,210,865	-		CCNA_03057	0.35	+0.2
3,210,872	+		CCNA_03057	0.37	+2.1
3,210,877	+		CCNA_03057	0.38	-0.1
3,210,915	+		CCNA_03057	0.48	+0.4
3,211,076	-				-0.1
3,211,104	+				-0.1
3,211,106	-				+1.4
3,211,113	-				-0.1
3,211,113	-				+0.6
3,211,116	+				+1.1
3,211,119	-				+0.5
3,211,124	-				-0.2
3,211,129	+				+0.5
3,211,137	-				-0.4
3,211,150	+				-0.5
3,211,200	-		CCNA_03058	0.10	+0.4
3,211,202	+		CCNA_03058	0.11	+1.1
3,211,210	-		CCNA_03058	0.11	-0.8
3,211,215	+		CCNA_03058	0.12	+0.6
3,211,230	+		CCNA_03058	0.14	-0.5
3,211,243	-		CCNA_03058	0.15	-0.7
3,211,405	+		CCNA_03058	0.33	+1.3
3,211,416	+		CCNA_03058	0.34	+0.4
3,211,431	-		CCNA_03058	0.36	+0.7
3,211,431	-		CCNA_03058	0.36	+0.2
3,211,483	+		CCNA_03058	0.41	-2.1
3,211,491	-		CCNA_03058	0.42	-0.2
3,211,499	-		CCNA_03058	0.43	-0.6
3,211,535	-		CCNA_03058	0.47	+0.1
3,211,570	-		CCNA_03058	0.51	-0.3
3,211,570	-		CCNA_03058	0.51	-0.8
3,211,572	+		CCNA_03058	0.51	-1.7
3,211,584	+		CCNA_03058	0.52	-0.9
3,211,617	-		CCNA_03058	0.56	-0.5