Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02830

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,983,969	-		CCNA_02829	0.47	+0.7
2,984,000	-		CCNA_02829	0.49	+0.9
2,984,001	-		CCNA_02829	0.50	+0.1
2,984,001	-		CCNA_02829	0.50	+0.4
2,984,014	-		CCNA_02829	0.51	-0.2
2,984,065	+		CCNA_02829	0.55	+0.8
2,984,065	+		CCNA_02829	0.55	-1.1
2,984,065	+		CCNA_02829	0.55	-0.4
2,984,075	+		CCNA_02829	0.56	+1.3
2,984,075	+		CCNA_02829	0.56	+0.8
2,984,078	-		CCNA_02829	0.56	-1.5
2,984,086	+		CCNA_02829	0.57	+0.8
2,984,088	-		CCNA_02829	0.57	-0.4
2,984,094	-		CCNA_02829	0.57	-0.4
2,984,111	+		CCNA_02829	0.59	+1.3
2,984,119	-		CCNA_02829	0.59	-1.3
2,984,138	+		CCNA_02829	0.61	+0.8
2,984,151	-		CCNA_02829	0.62	+0.8
2,984,159	-		CCNA_02829	0.63	+0.8
2,984,161	-		CCNA_02829	0.63	+0.1
2,984,327	+		CCNA_02829	0.77	+0.1
2,984,327	+		CCNA_02829	0.77	+0.4
2,984,332	+		CCNA_02829	0.77	+0.5
2,984,335	-		CCNA_02829	0.78	+0.0
2,984,349	+		CCNA_02829	0.79	-0.1
2,984,350	-		CCNA_02829	0.79	+0.6
2,984,386	+		CCNA_02829	0.82	+0.0
2,984,426	-		CCNA_02829	0.85	-0.6
2,984,426	-		CCNA_02829	0.85	-0.1
2,984,427	+		CCNA_02829	0.85	+0.0
2,984,439	+				+2.5
2,984,462	+		CCNA_02829	0.88	+1.5
2,984,465	-		CCNA_02829	0.89	+1.2
2,984,500	-				-0.2
2,984,505	-				+0.5
2,984,519	+				+0.5
2,984,526	+				-0.5
2,984,527	-				+2.3
2,984,527	-				+3.1
2,984,527	-				+2.6
2,984,527	-				+2.7
2,984,527	-				+2.9
2,984,532	+				+1.5
2,984,532	+				+0.2
2,984,532	+				-1.8
2,984,540	-				-1.4
2,984,540	-				-1.2
2,984,552	-				-1.4
2,984,552	-				+0.2
2,984,563	+				+0.5
2,984,615	-		CCNA_03980	0.16	+0.6
2,984,615	-		CCNA_03980	0.16	-0.2
2,984,615	-		CCNA_03980	0.16	+0.1
2,984,620	-		CCNA_03980	0.20	+2.1
2,984,641	-		CCNA_03980	0.37	+1.3
2,984,652	+		CCNA_03980	0.45	+0.2
2,984,660	-		CCNA_03980	0.52	-0.1
2,984,669	-		CCNA_03980	0.59	-1.4
2,984,675	+		CCNA_03980	0.63	+0.4
2,984,675	+		CCNA_03980	0.63	+1.8
2,984,675	+		CCNA_03980	0.63	+0.9
2,984,675	+		CCNA_03980	0.63	-1.0
2,984,675	+		CCNA_03980	0.63	+1.3
2,984,683	-		CCNA_03980	0.70	-0.8
2,984,683	-		CCNA_03980	0.70	-0.3
2,984,683	-		CCNA_03980	0.70	+0.6
2,984,683	-		CCNA_03980	0.70	+1.8
2,984,683	-		CCNA_03980	0.70	-1.4
2,984,708	+				+0.9
2,984,708	+				+1.1
2,984,708	+				-0.2
2,984,716	-				+0.3
2,984,716	-				-1.6
2,984,780	-				+0.1
2,984,780	-				-1.0
2,984,787	+				+0.6
2,985,019	+		CCNA_02830	0.30	+1.3
2,985,057	+		CCNA_02830	0.53	+0.6
2,985,057	+		CCNA_02830	0.53	-0.1
2,985,065	-		CCNA_02830	0.57	+0.8
2,985,091	-		CCNA_02830	0.73	-0.5
2,985,120	-		CCNA_02830	0.89	-0.9
2,985,126	+				-1.1
2,985,199	-				-0.6
2,985,263	-				-0.3
2,985,269	+				+0.5
2,985,282	+		CCNA_02831	0.12	-0.2
2,985,296	+		CCNA_02831	0.14	-0.6
2,985,296	+		CCNA_02831	0.14	-0.5
2,985,296	+		CCNA_02831	0.14	+0.2
2,985,304	-		CCNA_02831	0.16	-1.5
2,985,304	-		CCNA_02831	0.16	-1.8
2,985,306	+		CCNA_02831	0.16	-2.2
2,985,376	+		CCNA_02831	0.29	+0.9
2,985,449	-		CCNA_02831	0.42	-0.7
2,985,449	-		CCNA_02831	0.42	-1.1
2,985,473	+		CCNA_02831	0.46	+0.8
2,985,478	+		CCNA_02831	0.47	+0.6
2,985,497	+		CCNA_02831	0.50	-0.4
2,985,505	-		CCNA_02831	0.52	-0.8
2,985,549	+		CCNA_02831	0.60	-0.9
2,985,555	+		CCNA_02831	0.61	+1.7
2,985,556	+		CCNA_02831	0.61	+1.3
2,985,557	-		CCNA_02831	0.61	+1.1
2,985,557	-		CCNA_02831	0.61	+1.3
2,985,572	+		CCNA_02831	0.64	+0.5
2,985,572	+		CCNA_02831	0.64	-1.3
2,985,574	+		CCNA_02831	0.64	-0.5
2,985,578	+		CCNA_02831	0.65	-1.4
2,985,580	-		CCNA_02831	0.65	+0.5
2,985,588	+		CCNA_02831	0.67	-2.0
2,985,594	+		CCNA_02831	0.68	+0.0
2,985,594	+		CCNA_02831	0.68	-2.6
2,985,594	+		CCNA_02831	0.68	-1.4
2,985,594	+		CCNA_02831	0.68	-0.0
2,985,594	+		CCNA_02831	0.68	+0.7
2,985,595	-		CCNA_02831	0.68	-0.1
2,985,602	-		CCNA_02831	0.69	+1.4
2,985,602	-		CCNA_02831	0.69	+0.7
2,985,602	-		CCNA_02831	0.69	+0.6
2,985,602	-		CCNA_02831	0.69	-0.8
2,985,602	-		CCNA_02831	0.69	-1.2
2,985,602	-		CCNA_02831	0.69	-1.3
2,985,602	-		CCNA_02831	0.69	+0.6
2,985,639	+		CCNA_02831	0.76	+1.3
2,985,642	+		CCNA_02831	0.76	-0.7
2,985,649	+		CCNA_02831	0.78	-1.3
2,985,649	+		CCNA_02831	0.78	+0.6
2,985,649	+		CCNA_02831	0.78	-0.9
2,985,649	+		CCNA_02831	0.78	-0.7
2,985,649	+		CCNA_02831	0.78	+0.3
2,985,649	+		CCNA_02831	0.78	-1.8
2,985,649	+		CCNA_02831	0.78	-1.4
2,985,650	-		CCNA_02831	0.78	-0.5
2,985,650	-		CCNA_02831	0.78	+0.2
2,985,657	-		CCNA_02831	0.79	-0.1
2,985,657	-		CCNA_02831	0.79	+0.3
2,985,657	-		CCNA_02831	0.79	-1.5
2,985,657	-		CCNA_02831	0.79	+1.1
2,985,657	-		CCNA_02831	0.79	-1.1
2,985,657	-		CCNA_02831	0.79	-0.7
2,985,685	+		CCNA_02831	0.84	+1.1
2,985,709	+		CCNA_02831	0.88	-1.0
2,985,719	+				-0.2
2,985,719	+				-0.4
2,985,720	+				+1.3
2,985,720	+				+1.8
2,985,720	+				+1.3
2,985,728	-				+0.1
2,985,728	-				-0.2
2,985,748	-				-0.7
2,985,753	+				+0.0
2,985,753	-				-0.9
2,985,822	-				+2.2
2,985,851	-				-0.1
2,985,859	-				+0.5
2,985,878	+				-0.6
2,985,888	+				+0.8
2,985,932	+				+0.1
2,985,932	+				+1.3
2,985,940	-				-0.6
2,985,988	+				+0.5
2,985,988	+				+0.1
2,985,996	-		CCNA_02832	0.10	-0.6
2,985,996	-		CCNA_02832	0.10	-1.0
2,985,996	-		CCNA_02832	0.10	+1.2
2,985,996	-		CCNA_02832	0.10	+0.6
2,985,996	-		CCNA_02832	0.10	+2.6
2,985,996	-		CCNA_02832	0.10	-0.1
2,985,996	-		CCNA_02832	0.10	+1.2
2,985,996	-		CCNA_02832	0.10	+1.4
2,985,996	-		CCNA_02832	0.10	+2.5
2,985,996	-		CCNA_02832	0.10	+0.4
2,985,996	-		CCNA_02832	0.10	+0.9
2,986,002	-		CCNA_02832	0.11	-0.4
2,986,018	+		CCNA_02832	0.12	+0.1
2,986,026	-		CCNA_02832	0.13	-0.9
2,986,047	-		CCNA_02832	0.14	+0.3
2,986,055	-		CCNA_02832	0.15	-0.1
2,986,063	-		CCNA_02832	0.16	+0.2
2,986,064	-		CCNA_02832	0.16	-0.3
2,986,070	+		CCNA_02832	0.16	-0.5
2,986,078	-		CCNA_02832	0.17	+0.4
2,986,107	+		CCNA_02832	0.19	-1.6
2,986,107	+		CCNA_02832	0.19	-0.3
2,986,115	-		CCNA_02832	0.20	+0.5
2,986,125	-		CCNA_02832	0.20	-0.7
2,986,136	+		CCNA_02832	0.21	+1.4