Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02655

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,807,788	+		CCNA_02653	0.68	-0.2
2,807,808	+		CCNA_02653	0.70	-1.6
2,807,808	+		CCNA_02653	0.70	-0.6
2,807,808	+		CCNA_02653	0.70	+0.2
2,807,808	+		CCNA_02653	0.70	-0.2
2,807,816	+		CCNA_02653	0.71	-1.8
2,807,816	+		CCNA_02653	0.71	-1.7
2,807,816	+		CCNA_02653	0.71	+0.6
2,807,824	-		CCNA_02653	0.72	+0.3
2,807,824	-		CCNA_02653	0.72	+0.8
2,807,854	+		CCNA_02653	0.75	+0.3
2,807,865	-		CCNA_02653	0.76	+0.4
2,807,882	+		CCNA_02653	0.78	+0.4
2,807,903	-		CCNA_02653	0.81	+0.2
2,807,914	+		CCNA_02653	0.82	+0.4
2,807,924	+		CCNA_02653	0.83	+0.1
2,807,960	+		CCNA_02653	0.87	+1.4
2,807,960	+		CCNA_02653	0.87	+0.3
2,807,968	-		CCNA_02653	0.88	+0.7
2,807,972	+		CCNA_02653	0.88	-1.1
2,807,972	+		CCNA_02653	0.88	-0.1
2,807,972	+		CCNA_02653	0.88	+0.1
2,807,980	-		CCNA_02653	0.89	+0.8
2,807,980	-		CCNA_02653	0.89	-1.0
2,807,981	+		CCNA_02653	0.89	-0.8
2,807,981	+		CCNA_02653	0.89	-0.8
2,808,028	+				-0.9
2,808,041	-				-1.5
2,808,052	+				-3.2
2,808,052	+				-0.6
2,808,052	+				-0.8
2,808,052	+				-0.2
2,808,060	-				-1.1
2,808,060	-				-0.6
2,808,077	+				+0.3
2,808,080	-				+0.9
2,808,116	+				+0.1
2,808,129	+				+0.3
2,808,155	-				-0.5
2,808,219	+				-0.2
2,808,219	+				+1.3
2,808,219	+				-0.1
2,808,227	-				-0.7
2,808,229	+				-1.0
2,808,229	+				-0.0
2,808,237	-				+0.4
2,808,237	-				+0.6
2,808,265	-		CCNA_02654	0.15	-0.6
2,808,270	-		CCNA_02654	0.16	+0.6
2,808,273	+		CCNA_02654	0.17	+0.6
2,808,273	+		CCNA_02654	0.17	-2.0
2,808,273	+		CCNA_02654	0.17	-1.4
2,808,273	+		CCNA_02654	0.17	+0.8
2,808,273	+		CCNA_02654	0.17	-1.6
2,808,273	+		CCNA_02654	0.17	+1.4
2,808,273	+		CCNA_02654	0.17	-0.9
2,808,281	-		CCNA_02654	0.19	-0.8
2,808,281	-		CCNA_02654	0.19	-0.8
2,808,281	-		CCNA_02654	0.19	-1.5
2,808,281	-		CCNA_02654	0.19	-0.2
2,808,281	-		CCNA_02654	0.19	-0.6
2,808,281	-		CCNA_02654	0.19	-0.1
2,808,281	-		CCNA_02654	0.19	+0.4
2,808,281	-		CCNA_02654	0.19	+0.8
2,808,281	-		CCNA_02654	0.19	+0.2
2,808,286	+		CCNA_02654	0.21	-0.4
2,808,304	-		CCNA_02654	0.25	-0.6
2,808,366	-		CCNA_02654	0.42	+0.8
2,808,368	-		CCNA_02654	0.42	-0.3
2,808,386	+		CCNA_02654	0.47	-0.2
2,808,410	+		CCNA_02654	0.53	-0.2
2,808,418	-		CCNA_02654	0.56	+0.4
2,808,444	+		CCNA_02654	0.62	-0.1
2,808,513	+		CCNA_02654	0.81	+1.3
2,808,550	+				+1.6
2,808,550	+				+2.8
2,808,584	-				-0.0
2,808,626	-				-0.5
2,808,630	+				-1.6
2,808,632	-				-1.1
2,808,636	+				-0.2
2,808,636	+				+1.1
2,808,636	+				+1.3
2,808,636	+				+0.1
2,808,636	+				-0.9
2,808,636	+				+0.1
2,808,643	+				+2.8
2,808,644	-				+0.2
2,808,644	-				-0.4
2,808,644	-				-0.1
2,808,644	-				-0.0
2,808,645	-				-0.1
2,808,649	+				-0.3
2,808,649	+				+0.1
2,808,649	+				+1.2
2,808,657	-				+0.1
2,808,657	-				-0.6
2,808,657	-				-2.2
2,808,680	-				+0.2
2,808,680	-				-0.4
2,808,687	+				-1.3
2,808,712	-				-0.7
2,808,719	+				-1.5
2,808,727	-				+1.3
2,808,756	+				-0.6
2,808,756	+				-1.0
2,808,760	+				+0.4
2,808,799	-				+0.3
2,808,829	+		CCNA_02655	0.10	+0.1
2,808,831	+		CCNA_02655	0.10	+0.2
2,808,856	+		CCNA_02655	0.15	-0.5
2,808,884	-		CCNA_02655	0.21	-1.6
2,808,941	-		CCNA_02655	0.31	-1.1
2,808,950	-		CCNA_02655	0.33	-0.8
2,808,950	-		CCNA_02655	0.33	-0.1
2,808,954	-		CCNA_02655	0.34	-0.3
2,808,967	+		CCNA_02655	0.36	-1.1
2,808,975	-		CCNA_02655	0.38	-1.4
2,808,994	+		CCNA_02655	0.42	+1.8
2,809,001	+		CCNA_02655	0.43	+0.9
2,809,002	-		CCNA_02655	0.43	-0.6
2,809,002	-		CCNA_02655	0.43	+0.2
2,809,032	-		CCNA_02655	0.49	-0.2
2,809,042	+		CCNA_02655	0.51	+0.9
2,809,077	-		CCNA_02655	0.57	+0.4
2,809,100	-		CCNA_02655	0.62	+1.0
2,809,113	-		CCNA_02655	0.64	+0.8
2,809,175	-		CCNA_02655	0.76	-0.8
2,809,184	-		CCNA_02655	0.78	-1.8
2,809,230	-		CCNA_02655	0.86	-1.2
2,809,308	+				-0.6
2,809,308	+				+0.3
2,809,308	+				+1.2
2,809,316	-				-1.4
2,809,316	-				-0.3
2,809,316	-				-2.6
2,809,367	-				+0.3
2,809,373	-				-0.7
2,809,379	-				-0.9
2,809,379	-				-0.2
2,809,383	-				+0.5
2,809,434	-				-1.4
2,809,448	+				+0.0
2,809,566	+		CCNA_02656	0.24	+0.3
2,809,582	-		CCNA_02656	0.26	-0.9
2,809,650	+		CCNA_02656	0.35	-0.8
2,809,658	-		CCNA_02656	0.36	-0.6
2,809,660	-		CCNA_02656	0.36	-2.0
2,809,725	-		CCNA_02656	0.44	+2.0
2,809,735	+		CCNA_02656	0.45	-1.7
2,809,763	+		CCNA_02656	0.49	-1.4
2,809,773	-		CCNA_02656	0.50	-0.7
2,809,773	-		CCNA_02656	0.50	-0.1
2,809,834	+		CCNA_02656	0.57	-1.3
2,809,842	-		CCNA_02656	0.58	-0.5
2,809,847	-		CCNA_02656	0.59	+2.6
2,809,858	+		CCNA_02656	0.60	-1.0
2,809,867	+		CCNA_02656	0.61	+0.4
2,809,877	-		CCNA_02656	0.63	+1.9
2,809,894	+		CCNA_02656	0.65	-0.4
2,809,940	+		CCNA_02656	0.70	-1.1
2,809,948	-		CCNA_02656	0.71	+0.3
2,809,948	-		CCNA_02656	0.71	-0.6
2,809,956	+		CCNA_02656	0.72	+0.5
2,809,957	+		CCNA_02656	0.72	+0.1
2,809,964	-		CCNA_02656	0.73	+0.7
2,809,964	-		CCNA_02656	0.73	+2.2
2,809,993	-		CCNA_02656	0.77	+0.2
2,810,055	+		CCNA_02656	0.85	-0.9
2,810,063	-		CCNA_02656	0.85	-1.7
2,810,144	+				+1.8
2,810,153	-				+0.4
2,810,190	+				-1.0
2,810,208	-				-1.1
2,810,225	-				+1.4
2,810,225	-				+0.9
2,810,250	+				+2.2
2,810,252	-				+1.5
2,810,275	-		CCNA_02657	0.14	+0.3
2,810,284	+		CCNA_02657	0.15	-1.9
2,810,299	-		CCNA_02657	0.18	-0.9