Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02449

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,588,933	+		CCNA_02447	0.80	+2.3
2,588,948	+		CCNA_02447	0.82	+1.3
2,588,954	+		CCNA_02447	0.82	+2.7
2,588,956	-		CCNA_02447	0.83	+6.6
2,588,959	+		CCNA_02447	0.83	+3.1
2,588,988	+		CCNA_02447	0.87	-0.6
2,589,008	+		CCNA_02447	0.89	+1.2
2,589,008	+		CCNA_02447	0.89	-0.1
2,589,009	-		CCNA_02447	0.90	+6.6
2,589,018	+				+1.3
2,589,025	+				+4.3
2,589,037	+				+3.6
2,589,037	+				+2.5
2,589,037	+				+2.9
2,589,037	+				+2.5
2,589,045	-				+6.6
2,589,045	-				+6.9
2,589,045	-				+7.0
2,589,045	-				+6.8
2,589,045	-				+6.8
2,589,045	-				+6.6
2,589,050	+				+2.0
2,589,050	+				+2.3
2,589,050	+				+3.1
2,589,050	+				+1.1
2,589,063	-				+7.1
2,589,069	-				+6.7
2,589,070	-				+6.6
2,589,070	-				+6.5
2,589,085	+				+5.1
2,589,115	-				+1.3
2,589,115	-				+1.3
2,589,166	+				+4.6
2,589,171	+				+3.9
2,589,202	-		CCNA_02448	0.14	+8.4
2,589,231	+		CCNA_02448	0.18	+4.5
2,589,245	+		CCNA_02448	0.20	+4.5
2,589,248	-		CCNA_02448	0.20	+8.2
2,589,253	-		CCNA_02448	0.21	+8.1
2,589,277	+		CCNA_02448	0.25	+3.9
2,589,303	+		CCNA_02448	0.29	+3.4
2,589,311	-		CCNA_02448	0.30	+8.4
2,589,318	-		CCNA_02448	0.31	+8.4
2,589,348	-		CCNA_02448	0.35	+7.7
2,589,350	+		CCNA_02448	0.36	+3.9
2,589,360	+		CCNA_02448	0.37	+4.4
2,589,361	+		CCNA_02448	0.37	+3.7
2,589,361	-		CCNA_02448	0.37	+8.2
2,589,374	-		CCNA_02448	0.39	+8.2
2,589,394	-		CCNA_02448	0.42	+8.0
2,589,444	+		CCNA_02448	0.50	+3.2
2,589,454	+		CCNA_02448	0.51	+3.4
2,589,473	-		CCNA_02448	0.54	+7.9
2,589,473	-		CCNA_02448	0.54	+8.2
2,589,483	+		CCNA_02448	0.55	+3.7
2,589,508	+		CCNA_02448	0.59	+3.5
2,589,520	-		CCNA_02448	0.61	+7.4
2,589,530	+		CCNA_02448	0.62	+4.1
2,589,530	+		CCNA_02448	0.62	+4.9
2,589,530	+		CCNA_02448	0.62	+4.3
2,589,530	+		CCNA_02448	0.62	+3.3
2,589,531	+		CCNA_02448	0.62	+3.6
2,589,531	+		CCNA_02448	0.62	+3.3
2,589,531	+		CCNA_02448	0.62	+2.7
2,589,531	+		CCNA_02448	0.62	+3.9
2,589,532	+		CCNA_02448	0.63	+4.9
2,589,539	-		CCNA_02448	0.64	+7.8
2,589,539	-		CCNA_02448	0.64	+8.3
2,589,562	-		CCNA_02448	0.67	+7.7
2,589,570	+		CCNA_02448	0.68	+3.3
2,589,570	-		CCNA_02448	0.68	+8.3
2,589,582	+		CCNA_02448	0.70	+3.4
2,589,588	-		CCNA_02448	0.71	+8.0
2,589,588	-		CCNA_02448	0.71	+7.8
2,589,588	-		CCNA_02448	0.71	+7.9
2,589,591	+		CCNA_02448	0.71	+4.4
2,589,595	+		CCNA_02448	0.72	+5.2
2,589,600	+		CCNA_02448	0.73	+4.1
2,589,600	+		CCNA_02448	0.73	+4.8
2,589,603	-		CCNA_02448	0.73	+8.2
2,589,616	-		CCNA_02448	0.75	+8.2
2,589,629	-		CCNA_02448	0.77	+8.3
2,589,634	+		CCNA_02448	0.78	+4.4
2,589,634	+		CCNA_02448	0.78	+4.3
2,589,639	+		CCNA_02448	0.79	+4.0
2,589,639	+		CCNA_02448	0.79	+3.6
2,589,639	+		CCNA_02448	0.79	+4.9
2,589,647	-		CCNA_02448	0.80	+8.3
2,589,647	-		CCNA_02448	0.80	+8.2
2,589,647	-		CCNA_02448	0.80	+8.1
2,589,647	-		CCNA_02448	0.80	+8.1
2,589,647	-		CCNA_02448	0.80	+8.4
2,589,664	+		CCNA_02448	0.82	+5.2
2,589,664	+		CCNA_02448	0.82	+4.2
2,589,672	-		CCNA_02448	0.83	+8.3
2,589,674	+		CCNA_02448	0.84	+6.4
2,589,695	-		CCNA_02448	0.87	+8.0
2,589,762	+				+4.4
2,589,829	+				-1.6
2,589,853	-				-2.3
2,589,913	+				-0.1
2,589,915	+				+0.9
2,589,982	+				-0.6
2,589,990	-				-0.0
2,590,027	-		CCNA_02449	0.15	-0.0
2,590,058	-		CCNA_02449	0.19	+1.4
2,590,108	+		CCNA_02449	0.27	+1.2
2,590,117	-		CCNA_02449	0.28	+0.3
2,590,117	-		CCNA_02449	0.28	-0.1
2,590,154	-		CCNA_02449	0.34	+0.2
2,590,154	-		CCNA_02449	0.34	-0.0
2,590,253	-		CCNA_02449	0.49	-0.4
2,590,310	-		CCNA_02449	0.58	-0.0
2,590,310	-		CCNA_02449	0.58	+0.1
2,590,341	-		CCNA_02449	0.63	+1.0
2,590,382	+		CCNA_02449	0.69	-0.8
2,590,387	+		CCNA_02449	0.70	-1.5
2,590,390	-		CCNA_02449	0.70	+0.1
2,590,397	-		CCNA_02449	0.71	+0.4
2,590,426	+		CCNA_02449	0.76	+0.4
2,590,439	+		CCNA_02449	0.78	-0.6
2,590,439	+		CCNA_02449	0.78	-0.6
2,590,444	+		CCNA_02449	0.78	-1.8
2,590,447	-		CCNA_02449	0.79	-0.2
2,590,449	+		CCNA_02449	0.79	-0.6
2,590,454	+		CCNA_02449	0.80	-0.3
2,590,461	-		CCNA_02449	0.81	-0.8
2,590,527	+				-0.1
2,590,560	+				-0.3
2,590,572	+				+0.5
2,590,580	-				-1.0
2,590,580	-				+0.8
2,590,617	-				-0.6
2,590,708	+				+1.4
2,590,723	-				-0.8
2,590,743	+				-1.5
2,590,743	+				+1.6
2,590,761	+				-0.9
2,590,768	+				+0.2
2,590,791	-				+0.4
2,590,791	-				-0.3
2,590,815	+		CCNA_02450	0.15	+0.6
2,590,830	+		CCNA_02450	0.19	-0.1
2,590,857	+		CCNA_02450	0.25	+0.1
2,590,857	+		CCNA_02450	0.25	+0.2
2,590,875	-		CCNA_02450	0.29	-1.3
2,590,890	+		CCNA_02450	0.33	+1.8
2,590,893	-		CCNA_02450	0.33	-0.3
2,590,904	+		CCNA_02450	0.36	+0.1
2,590,913	-		CCNA_02450	0.38	+0.1
2,590,934	-		CCNA_02450	0.43	-1.8
2,590,946	+		CCNA_02450	0.46	-0.3
2,590,948	+		CCNA_02450	0.46	+0.2
2,590,948	+		CCNA_02450	0.46	+1.7
2,590,956	-		CCNA_02450	0.48	+0.8
2,590,956	-		CCNA_02450	0.48	+0.2
2,590,956	-		CCNA_02450	0.48	-1.6
2,590,956	-		CCNA_02450	0.48	-0.9
2,590,958	+		CCNA_02450	0.48	-0.9
2,590,959	+		CCNA_02450	0.49	-0.0
2,590,984	+		CCNA_02450	0.54	+0.4
2,590,984	+		CCNA_02450	0.54	+1.2
2,590,986	-		CCNA_02450	0.55	-1.6
2,590,986	-		CCNA_02450	0.55	-0.6
2,591,043	+		CCNA_02450	0.68	-0.7
2,591,055	-		CCNA_02450	0.71	+1.0
2,591,072	+		CCNA_02450	0.75	+0.7
2,591,085	-		CCNA_02450	0.78	+0.3
2,591,106	+		CCNA_02450	0.83	+0.3
2,591,134	+		CCNA_02450	0.89	+0.2
2,591,143	+				+0.8
2,591,151	-				-1.2
2,591,153	+				+0.0
2,591,173	-				+0.6
2,591,176	+				+0.8
2,591,176	+				-1.2
2,591,176	+				+0.9
2,591,176	+				+2.2
2,591,176	+				+0.0
2,591,184	-				-0.2
2,591,226	+				-0.3
2,591,251	+				+2.2
2,591,260	+		CCNA_02451	0.11	+0.8
2,591,287	+		CCNA_02451	0.15	-0.5
2,591,287	+		CCNA_02451	0.15	-0.6
2,591,292	+		CCNA_02451	0.16	-1.0
2,591,297	+		CCNA_02451	0.16	+0.3
2,591,310	-		CCNA_02451	0.18	-1.3
2,591,322	+		CCNA_02451	0.20	-0.5
2,591,322	+		CCNA_02451	0.20	-0.6
2,591,322	+		CCNA_02451	0.20	-1.0
2,591,330	-		CCNA_02451	0.22	-0.5
2,591,373	+		CCNA_02451	0.28	-0.9
2,591,404	-		CCNA_02451	0.33	+0.3
2,591,462	+		CCNA_02451	0.42	-1.4
2,591,469	+		CCNA_02451	0.43	-1.2
2,591,470	-		CCNA_02451	0.43	+0.3
2,591,478	-		CCNA_02451	0.44	-1.7
2,591,505	+		CCNA_02451	0.49	-1.0
2,591,509	+		CCNA_02451	0.49	-1.9
2,591,509	+		CCNA_02451	0.49	-0.5
2,591,557	+		CCNA_02451	0.57	+1.0