Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02442

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,581,769	+		CCNA_02440	0.54	+0.2
2,581,835	+		CCNA_02440	0.60	+0.2
2,581,843	-		CCNA_02440	0.61	+0.8
2,581,844	-		CCNA_02440	0.61	+0.9
2,581,870	+		CCNA_02440	0.64	+1.0
2,581,870	+		CCNA_02440	0.64	+0.6
2,581,873	+		CCNA_02440	0.64	-0.1
2,581,873	+		CCNA_02440	0.64	-1.5
2,581,882	+		CCNA_02440	0.65	+0.5
2,581,886	+		CCNA_02440	0.65	-1.4
2,582,024	+		CCNA_02440	0.78	+0.1
2,582,026	-		CCNA_02440	0.79	+1.9
2,582,032	-		CCNA_02440	0.79	-0.9
2,582,128	-		CCNA_02440	0.88	-0.7
2,582,155	-				-0.1
2,582,242	+				-2.0
2,582,242	+				-1.1
2,582,242	+				-0.3
2,582,242	+				+0.8
2,582,250	-				+0.4
2,582,250	-				+0.5
2,582,272	+				-1.5
2,582,280	-				-0.3
2,582,280	-				-0.0
2,582,280	-				-1.1
2,582,307	+				+0.2
2,582,318	+				+1.3
2,582,326	-				-2.3
2,582,337	+				-0.9
2,582,339	-				-0.2
2,582,339	-				-0.1
2,582,345	-				-1.4
2,582,345	-				-2.2
2,582,345	-				+0.4
2,582,394	+				-1.4
2,582,402	-				-0.6
2,582,404	+				-1.1
2,582,407	-				+1.5
2,582,407	-				-0.8
2,582,419	+				+0.6
2,582,440	+				-0.1
2,582,468	-				-0.1
2,582,487	-				-1.0
2,582,488	+				+0.5
2,582,507	+				-0.1
2,582,519	+				-1.1
2,582,527	-				-0.7
2,582,632	+		CCNA_02441	0.29	-0.9
2,582,636	-		CCNA_02441	0.31	-0.2
2,582,640	+		CCNA_02441	0.34	-0.0
2,582,655	+		CCNA_02441	0.43	-0.8
2,582,681	-		CCNA_02441	0.60	-1.0
2,582,736	-				-1.2
2,582,746	-				-0.8
2,582,755	+				+0.8
2,582,755	+				-0.1
2,582,755	+				+0.4
2,582,763	-				+0.3
2,582,763	-				-3.0
2,582,763	-				+0.5
2,582,763	-				-1.3
2,582,763	-				-0.5
2,582,763	-				-0.1
2,582,763	-				-0.8
2,582,763	-				-1.5
2,582,785	-				-0.1
2,582,827	+				-1.1
2,582,835	+				-1.0
2,582,843	-				+0.2
2,582,877	-				-0.3
2,582,877	-				+0.3
2,582,890	+				-0.2
2,582,916	-		CCNA_02442	0.11	-1.6
2,582,998	-		CCNA_02442	0.16	-0.4
2,583,016	+		CCNA_02442	0.17	-1.6
2,583,016	+		CCNA_02442	0.17	-0.1
2,583,043	+		CCNA_02442	0.19	-2.4
2,583,050	+		CCNA_02442	0.19	-0.6
2,583,050	+		CCNA_02442	0.19	-1.4
2,583,077	-		CCNA_02442	0.21	-0.7
2,583,113	-		CCNA_02442	0.24	-0.7
2,583,139	+		CCNA_02442	0.25	-0.2
2,583,139	+		CCNA_02442	0.25	+2.2
2,583,147	-		CCNA_02442	0.26	-0.6
2,583,157	+		CCNA_02442	0.27	-1.6
2,583,157	+		CCNA_02442	0.27	+0.2
2,583,157	+		CCNA_02442	0.27	+0.4
2,583,170	-		CCNA_02442	0.27	+1.1
2,583,175	-		CCNA_02442	0.28	+1.0
2,583,213	-		CCNA_02442	0.30	-1.7
2,583,250	-		CCNA_02442	0.33	-0.4
2,583,293	+		CCNA_02442	0.36	-1.1
2,583,313	+		CCNA_02442	0.37	+0.6
2,583,319	+		CCNA_02442	0.37	-0.2
2,583,319	+		CCNA_02442	0.37	-2.5
2,583,321	-		CCNA_02442	0.38	-1.1
2,583,339	-		CCNA_02442	0.39	-0.1
2,583,340	-		CCNA_02442	0.39	-1.5
2,583,366	-		CCNA_02442	0.41	-2.1
2,583,381	+		CCNA_02442	0.42	-0.3
2,583,381	+		CCNA_02442	0.42	-1.0
2,583,381	+		CCNA_02442	0.42	+0.4
2,583,389	-		CCNA_02442	0.42	-1.8
2,583,401	+		CCNA_02442	0.43	-1.7
2,583,401	+				+1.4
2,583,409	-		CCNA_02442	0.43	+1.0
2,583,409	-		CCNA_02442	0.43	+1.0
2,583,409	-		CCNA_02442	0.43	-0.5
2,583,409	-		CCNA_02442	0.43	-0.9
2,583,432	-		CCNA_02442	0.45	-0.1
2,583,435	-		CCNA_02442	0.45	-0.1
2,583,447	-		CCNA_02442	0.46	-0.9
2,583,465	-		CCNA_02442	0.47	+1.1
2,583,465	-		CCNA_02442	0.47	+0.4
2,583,465	-		CCNA_02442	0.47	-0.7
2,583,526	-		CCNA_02442	0.51	+0.4
2,583,573	-		CCNA_02442	0.54	-0.6
2,583,619	+		CCNA_02442	0.57	-1.7
2,583,627	+		CCNA_02442	0.58	+0.1
2,583,635	-		CCNA_02442	0.58	-0.2
2,583,682	-		CCNA_02442	0.62	-2.4
2,583,682	-		CCNA_02442	0.62	-1.0
2,583,710	+		CCNA_02442	0.63	+0.3
2,583,745	-		CCNA_02442	0.66	-2.4
2,583,795	+		CCNA_02442	0.69	-1.2
2,583,844	+		CCNA_02442	0.72	+0.3
2,583,844	-		CCNA_02442	0.72	+1.7
2,583,922	-		CCNA_02442	0.78	-1.1
2,583,932	-		CCNA_02442	0.78	+1.0
2,583,940	+		CCNA_02442	0.79	+0.2
2,583,961	+		CCNA_02442	0.80	-0.4
2,583,969	-		CCNA_02442	0.81	+0.9
2,583,988	+		CCNA_02442	0.82	-0.2
2,583,996	-		CCNA_02442	0.82	-0.2
2,583,996	-		CCNA_02442	0.82	-0.2
2,583,996	-		CCNA_02442	0.82	-0.1
2,584,017	-		CCNA_02442	0.84	+0.2
2,584,032	+		CCNA_02442	0.85	+1.8
2,584,040	+		CCNA_02442	0.85	+0.0
2,584,041	-		CCNA_02442	0.85	-0.4
2,584,050	+		CCNA_02442	0.86	-0.0
2,584,050	+		CCNA_02442	0.86	-1.2
2,584,050	+		CCNA_02442	0.86	+0.8
2,584,050	+		CCNA_02442	0.86	-0.3
2,584,058	-		CCNA_02442	0.87	+1.4
2,584,058	-		CCNA_02442	0.87	-1.9
2,584,060	+		CCNA_02442	0.87	+0.6
2,584,108	-		CCNA_02442	0.90	-0.9
2,584,114	+				-0.9
2,584,122	-				+0.3
2,584,122	-				+0.8
2,584,126	+				-0.1
2,584,143	+				-0.7
2,584,143	+				-0.1
2,584,151	+				-0.3
2,584,159	-				-0.4
2,584,160	+				-1.1
2,584,160	+				+0.7
2,584,169	-				+0.4
2,584,417	+				-1.2
2,584,427	-				+1.0
2,584,431	+				-0.0
2,584,431	+				+2.2
2,584,431	+				+0.4
2,584,431	+				+1.2
2,584,431	+				-0.4
2,584,431	+				+0.8
2,584,431	+				+0.1
2,584,431	+				-0.2
2,584,431	+				+0.8
2,584,431	+				-1.4
2,584,431	+				+1.8
2,584,431	+				-0.3
2,584,431	+				+1.0
2,584,431	+				+0.3
2,584,431	+				+0.2
2,584,431	+				-0.1
2,584,431	+				-2.0
2,584,431	+				-0.7
2,584,431	+				-0.2
2,584,431	+				-0.7
2,584,431	+				+1.0
2,584,431	+				+3.0
2,584,431	+				+0.3
2,584,431	+				-0.3
2,584,431	+				-0.2
2,584,431	+				-1.8
2,584,431	+				-0.5
2,584,431	+				-0.7
2,584,431	+				-1.9
2,584,431	+				-1.1
2,584,431	+				-1.3
2,584,431	+				-1.4
2,584,431	+				+0.5
2,584,431	+				-0.3
2,584,431	+				+0.1
2,584,431	+				-1.6
2,584,431	+				-1.5
2,584,431	+				+1.3
2,584,431	+				+2.2
2,584,431	+				+0.3
2,584,431	+				-2.2
2,584,431	+				-0.2
2,584,431	+				-0.5
2,584,431	+				+1.6
2,584,431	+				-1.0
2,584,431	+				+0.3
2,584,431	+				+0.6
2,584,431	+				+1.4
2,584,431	+				-0.6
2,584,431	+				-1.2
2,584,431	+				+0.1
2,584,431	+				-0.2
2,584,431	+				+0.3
2,584,431	+				-1.0
2,584,431	+				+1.3
2,584,431	+				-0.1
2,584,431	+				-0.3
2,584,431	+				+0.9
2,584,431	+				+1.0
2,584,431	+				-0.2
2,584,431	+				+0.5
2,584,439	-				+0.6
2,584,439	-				-0.5
2,584,439	-				+0.0
2,584,439	-				+1.8
2,584,439	-				-1.1
2,584,439	-				-1.0
2,584,439	-				+0.2
2,584,439	-				-0.4
2,584,439	-				+1.1
2,584,439	-				-0.9
2,584,439	-				+0.8
2,584,439	-				+0.0
2,584,439	-				+0.5
2,584,439	-				-0.2
2,584,439	-				-2.3
2,584,439	-				-0.1
2,584,439	-				+1.1
2,584,439	-				+0.1
2,584,439	-				+0.5
2,584,439	-				+0.3
2,584,439	-				-0.0
2,584,439	-				-0.3
2,584,439	-				-0.4
2,584,439	-				+1.9
2,584,439	-				-0.1
2,584,439	-				-2.2
2,584,439	-				+0.7
2,584,439	-				-0.0
2,584,439	-				+0.9
2,584,439	-				-1.8
2,584,439	-				+1.5
2,584,439	-				-0.8
2,584,439	-				-1.6
2,584,439	-				+0.3
2,584,439	-				+0.8
2,584,439	-				-1.1
2,584,439	-				-1.3
2,584,439	-				+0.7
2,584,439	-				+0.6
2,584,439	-				-0.0
2,584,439	-				-1.0
2,584,439	-				-0.4
2,584,439	-				+0.0
2,584,439	-				+0.1
2,584,439	-				+1.1
2,584,439	-				+0.5
2,584,439	-				+0.5
2,584,439	-				+0.7
2,584,439	-				-0.7
2,584,439	-				-0.8
2,584,439	-				-0.5
2,584,439	-				+0.7
2,584,439	-				-0.4
2,584,439	-				+1.0
2,584,439	-				-0.9
2,584,439	-				-0.9
2,584,439	-				+1.2
2,584,439	-				+1.0
2,584,439	-				+0.8
2,584,439	-				-0.3
2,584,439	-				-1.1
2,584,439	-				-0.4
2,584,439	-				+0.6
2,584,439	-				+0.9
2,584,439	-				+1.7
2,584,439	-				+0.0
2,584,439	-				-0.8
2,584,439	-				+0.3
2,584,439	-				+4.7
2,584,439	-				-0.3
2,584,439	-				+2.8
2,584,439	-				-0.6
2,584,439	-				+0.6
2,584,454	+				-0.0
2,584,455	+				+0.4
2,584,462	-				+0.9
2,584,463	-				+0.3
2,584,514	-		CCNA_02443	0.11	+0.6
2,584,532	+		CCNA_02443	0.13	+1.0
2,584,536	-		CCNA_02443	0.13	+1.7
2,584,540	-		CCNA_02443	0.14	+2.0
2,584,551	+		CCNA_02443	0.15	-0.6
2,584,553	-		CCNA_02443	0.15	-0.3
2,584,553	-		CCNA_02443	0.15	-2.7
2,584,553	-		CCNA_02443	0.15	+0.6
2,584,559	-		CCNA_02443	0.16	+0.7
2,584,572	+		CCNA_02443	0.18	-0.8
2,584,572	+		CCNA_02443	0.18	-0.5
2,584,580	-		CCNA_02443	0.18	-1.4
2,584,641	+		CCNA_02443	0.26	+1.2
2,584,641	+		CCNA_02443	0.26	+0.3
2,584,641	+		CCNA_02443	0.26	-1.4
2,584,649	-		CCNA_02443	0.26	+1.1
2,584,673	+		CCNA_02443	0.29	+0.4
2,584,683	+		CCNA_02443	0.30	-0.6
2,584,707	+		CCNA_02443	0.33	-0.0
2,584,709	+		CCNA_02443	0.33	-1.3
2,584,710	-		CCNA_02443	0.34	-0.8
2,584,714	+		CCNA_02443	0.34	+0.3
2,584,719	+		CCNA_02443	0.35	-0.4
2,584,736	-		CCNA_02443	0.37	-1.7
2,584,743	-		CCNA_02443	0.37	-0.8
2,584,751	+		CCNA_02443	0.38	-1.2
2,584,770	+		CCNA_02443	0.41	+1.2
2,584,776	+		CCNA_02443	0.41	-1.2
2,584,827	-		CCNA_02443	0.47	+1.7
2,584,844	+		CCNA_02443	0.49	-1.1
2,584,864	-		CCNA_02443	0.51	-0.1
2,584,881	+		CCNA_02443	0.53	-0.6
2,584,881	+		CCNA_02443	0.53	-0.5
2,584,881	-		CCNA_02443	0.53	-1.2
2,584,889	-		CCNA_02443	0.54	-0.1
2,584,901	-		CCNA_02443	0.56	+1.5
2,584,964	-		CCNA_02443	0.63	+0.3
2,585,006	+		CCNA_02443	0.68	-1.1
2,585,052	-		CCNA_02443	0.73	-1.7
2,585,054	-		CCNA_02443	0.74	-1.9
2,585,058	+		CCNA_02443	0.74	-0.3
2,585,058	+		CCNA_02443	0.74	+1.4
2,585,063	+		CCNA_02443	0.75	-1.3
2,585,066	-		CCNA_02443	0.75	-0.9
2,585,066	-		CCNA_02443	0.75	-2.1
2,585,066	-		CCNA_02443	0.75	+0.6
2,585,071	-		CCNA_02443	0.75	+0.5
2,585,093	-		CCNA_02443	0.78	+1.2
2,585,093	-		CCNA_02443	0.78	-0.6
2,585,102	+		CCNA_02443	0.79	-0.7
2,585,105	-		CCNA_02443	0.79	-1.0
2,585,105	-		CCNA_02443	0.79	+1.0
2,585,105	-		CCNA_02443	0.79	+1.0
2,585,105	-		CCNA_02443	0.79	-0.1
2,585,150	+		CCNA_02443	0.85	-1.4
2,585,245	-				-1.7