Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02366

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,506,562	+		CCNA_02365	0.59	-1.0
2,506,595	-		CCNA_02365	0.60	-0.1
2,506,663	+		CCNA_02365	0.63	+0.2
2,506,663	+		CCNA_02365	0.63	-1.2
2,506,671	-		CCNA_02365	0.63	-2.0
2,506,671	-		CCNA_02365	0.63	-0.1
2,506,676	-		CCNA_02365	0.64	-1.4
2,506,701	-		CCNA_02365	0.65	-0.7
2,506,756	-		CCNA_02365	0.67	-0.7
2,506,793	+		CCNA_02365	0.69	-0.9
2,506,812	+		CCNA_02365	0.69	-1.3
2,506,812	+		CCNA_02365	0.69	+0.0
2,506,843	-		CCNA_02365	0.71	-1.2
2,506,875	-		CCNA_02365	0.72	-0.4
2,506,885	+		CCNA_02365	0.73	+2.8
2,506,885	+		CCNA_02365	0.73	+0.4
2,506,915	+		CCNA_02365	0.74	-1.7
2,506,936	+		CCNA_02365	0.75	+0.7
2,506,948	+		CCNA_02365	0.75	-1.4
2,506,951	-		CCNA_02365	0.75	-0.2
2,506,953	+		CCNA_02365	0.75	+0.5
2,507,039	-		CCNA_02365	0.79	-0.4
2,507,058	-		CCNA_02365	0.80	-0.5
2,507,144	+		CCNA_02365	0.84	-0.1
2,507,170	-		CCNA_02365	0.85	+0.7
2,507,273	+		CCNA_02365	0.89	-0.9
2,507,281	-		CCNA_02365	0.90	-0.5
2,507,287	-		CCNA_02365	0.90	-1.3
2,507,296	-				-0.2
2,507,300	-				-0.5
2,507,338	-				-1.4
2,507,339	+				-0.1
2,507,357	+				-0.3
2,507,393	+				-1.3
2,507,401	-				+0.7
2,507,430	-				-1.4
2,507,437	+				+1.8
2,507,445	-				+0.9
2,507,451	-				-0.2
2,507,499	-				+0.7
2,507,504	-				+1.2
2,507,504	-				-0.3
2,507,530	-				+0.1
2,507,545	-				-1.4
2,507,560	-				-0.4
2,507,560	-				-2.3
2,507,610	+				-0.6
2,507,617	+				-1.0
2,507,618	-				+0.4
2,507,618	-				-1.6
2,507,627	+				-1.3
2,507,631	+				+1.5
2,507,634	-				+0.8
2,507,635	-				-0.0
2,507,666	+				-1.8
2,507,686	-				+0.8
2,507,686	-				-2.2
2,507,732	-		CCNA_02366	0.12	-0.6
2,507,734	+		CCNA_02366	0.12	-0.5
2,507,837	+		CCNA_02366	0.19	+1.5
2,507,845	-		CCNA_02366	0.19	+0.4
2,507,847	+		CCNA_02366	0.19	-1.5
2,507,855	-		CCNA_02366	0.20	+0.1
2,507,890	+		CCNA_02366	0.22	-0.8
2,507,903	-		CCNA_02366	0.23	+0.7
2,507,903	-		CCNA_02366	0.23	+0.4
2,507,903	-		CCNA_02366	0.23	-2.3
2,507,907	+		CCNA_02366	0.23	-0.5
2,507,907	+		CCNA_02366	0.23	+1.7
2,507,915	-		CCNA_02366	0.24	-0.3
2,507,915	-		CCNA_02366	0.24	+1.0
2,507,934	+		CCNA_02366	0.25	-1.2
2,507,978	-		CCNA_02366	0.28	+1.8
2,507,988	-		CCNA_02366	0.29	-0.7
2,507,988	-		CCNA_02366	0.29	-0.8
2,508,014	-		CCNA_02366	0.30	+0.4
2,508,021	+		CCNA_02366	0.31	-1.1
2,508,030	-		CCNA_02366	0.31	-1.5
2,508,031	-		CCNA_02366	0.32	-0.9
2,508,058	-		CCNA_02366	0.33	-0.1
2,508,083	+		CCNA_02366	0.35	-2.6
2,508,108	-		CCNA_02366	0.37	-1.5
2,508,149	-		CCNA_02366	0.39	-1.3
2,508,157	-		CCNA_02366	0.40	-0.5
2,508,172	+		CCNA_02366	0.41	+0.0
2,508,190	+		CCNA_02366	0.42	-0.2
2,508,190	+		CCNA_02366	0.42	-1.0
2,508,282	+		CCNA_02366	0.48	-0.1
2,508,299	-		CCNA_02366	0.49	-1.7
2,508,307	-		CCNA_02366	0.50	-0.3
2,508,313	+		CCNA_02366	0.50	+2.3
2,508,334	-		CCNA_02366	0.52	+1.2
2,508,356	+		CCNA_02366	0.53	-0.8
2,508,384	+		CCNA_02366	0.55	-1.0
2,508,392	-		CCNA_02366	0.55	-1.1
2,508,439	-		CCNA_02366	0.59	+0.2
2,508,441	+		CCNA_02366	0.59	-0.3
2,508,441	+		CCNA_02366	0.59	-1.6
2,508,453	+		CCNA_02366	0.59	+0.8
2,508,463	+		CCNA_02366	0.60	-0.4
2,508,463	+				+2.2
2,508,463	+		CCNA_02366	0.60	-0.4
2,508,463	+		CCNA_02366	0.60	-0.2
2,508,471	-		CCNA_02366	0.61	+1.9
2,508,471	-		CCNA_02366	0.61	+0.4
2,508,473	+		CCNA_02366	0.61	-0.1
2,508,481	-		CCNA_02366	0.61	+0.2
2,508,481	-		CCNA_02366	0.61	+0.4
2,508,481	-		CCNA_02366	0.61	-1.0
2,508,490	+		CCNA_02366	0.62	-1.1
2,508,493	-		CCNA_02366	0.62	+0.2
2,508,519	-		CCNA_02366	0.64	-1.0
2,508,532	+		CCNA_02366	0.65	-2.7
2,508,532	+		CCNA_02366	0.65	+0.5
2,508,557	+		CCNA_02366	0.66	-0.1
2,508,557	+		CCNA_02366	0.66	-0.8
2,508,557	+		CCNA_02366	0.66	+0.5
2,508,565	-		CCNA_02366	0.67	+0.2
2,508,565	-		CCNA_02366	0.67	-0.1
2,508,565	-		CCNA_02366	0.67	-0.4
2,508,587	+		CCNA_02366	0.68	-1.3
2,508,605	-		CCNA_02366	0.70	+0.8
2,508,621	+		CCNA_02366	0.71	-0.7
2,508,642	-		CCNA_02366	0.72	-0.6
2,508,656	-		CCNA_02366	0.73	+0.5
2,508,760	-		CCNA_02366	0.80	-1.3
2,508,790	+		CCNA_02366	0.82	-0.7
2,508,846	+		CCNA_02366	0.85	+0.2
2,508,879	-		CCNA_02366	0.88	-1.3
2,508,942	-				+1.4
2,508,947	-				-1.3
2,508,955	+				-1.1
2,508,982	+				+0.8
2,508,995	-				-1.8
2,509,028	+				-0.8
2,509,078	+				-1.8
2,509,086	-				-0.5
2,509,097	-				+0.4
2,509,303	+				-0.3
2,509,334	+				+0.1
2,509,382	+				+0.8
2,509,392	+				+1.1
2,509,420	-				-0.7
2,509,463	+		CCNA_02367	0.14	+2.4
2,509,465	+		CCNA_02367	0.14	+1.0
2,509,607	+		CCNA_02367	0.27	+1.6
2,509,631	-		CCNA_02367	0.29	-0.4
2,509,643	+		CCNA_02367	0.30	+2.0
2,509,712	-		CCNA_02367	0.37	-1.7
2,509,727	+		CCNA_02367	0.38	+1.3
2,509,732	-		CCNA_02367	0.39	+2.8
2,509,732	-		CCNA_02367	0.39	-0.9
2,509,737	+		CCNA_02367	0.39	+1.8
2,509,737	+		CCNA_02367	0.39	+1.3
2,509,761	+		CCNA_02367	0.41	+1.8
2,509,806	+		CCNA_02367	0.45	+1.6
2,509,814	-		CCNA_02367	0.46	-0.0
2,509,818	+		CCNA_02367	0.46	+1.5
2,509,842	+		CCNA_02367	0.49	+2.0
2,509,850	-		CCNA_02367	0.49	-2.1
2,509,872	+		CCNA_02367	0.51	+1.0
2,509,872	-		CCNA_02367	0.51	+0.7
2,509,872	-		CCNA_02367	0.51	+1.6
2,509,960	-		CCNA_02367	0.60	+1.2
2,509,967	+		CCNA_02367	0.60	+1.0
2,509,967	+		CCNA_02367	0.60	+2.3
2,509,967	+		CCNA_02367	0.60	+0.7
2,509,975	-		CCNA_02367	0.61	-0.3
2,510,007	+		CCNA_02367	0.64	+0.4
2,510,014	+		CCNA_02367	0.64	+1.1
2,510,015	+		CCNA_02367	0.65	+1.6
2,510,024	+		CCNA_02367	0.65	+1.6
2,510,050	-		CCNA_02367	0.68	-0.3