Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02214

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,360,996	-		CCNA_02213	0.22	+0.1
2,361,001	+		CCNA_02213	0.22	-1.1
2,361,036	-		CCNA_02213	0.26	-0.0
2,361,089	-		CCNA_02213	0.30	+0.6
2,361,094	+		CCNA_02213	0.31	-0.2
2,361,150	-		CCNA_02213	0.36	+1.0
2,361,160	-		CCNA_02213	0.37	-0.7
2,361,168	-		CCNA_02213	0.38	+0.1
2,361,207	+		CCNA_02213	0.41	-1.1
2,361,341	+		CCNA_02213	0.53	-0.5
2,361,356	+				+1.0
2,361,364	-		CCNA_02213	0.56	+1.8
2,361,380	-				+0.8
2,361,416	-		CCNA_02213	0.60	+0.6
2,361,416	-		CCNA_02213	0.60	+0.3
2,361,416	-		CCNA_02213	0.60	-0.4
2,361,416	-		CCNA_02213	0.60	+0.2
2,361,416	-		CCNA_02213	0.60	+0.4
2,361,459	-		CCNA_02213	0.64	-0.5
2,361,477	-		CCNA_02213	0.66	-1.8
2,361,477	-		CCNA_02213	0.66	-1.2
2,361,477	-		CCNA_02213	0.66	-0.2
2,361,477	-		CCNA_02213	0.66	+1.0
2,361,477	-		CCNA_02213	0.66	-0.5
2,361,479	+		CCNA_02213	0.66	+0.3
2,361,496	+		CCNA_02213	0.68	-0.7
2,361,496	+		CCNA_02213	0.68	-0.6
2,361,504	-		CCNA_02213	0.68	+0.5
2,361,511	+		CCNA_02213	0.69	-1.1
2,361,511	+		CCNA_02213	0.69	+0.3
2,361,511	+		CCNA_02213	0.69	-0.1
2,361,511	+		CCNA_02213	0.69	-1.3
2,361,511	+		CCNA_02213	0.69	-1.2
2,361,519	-		CCNA_02213	0.70	-0.5
2,361,519	-		CCNA_02213	0.70	-0.4
2,361,519	-		CCNA_02213	0.70	-1.9
2,361,519	-		CCNA_02213	0.70	-1.9
2,361,519	-		CCNA_02213	0.70	+0.7
2,361,535	+		CCNA_02213	0.71	-0.2
2,361,543	-		CCNA_02213	0.72	-0.7
2,361,725	-		CCNA_02213	0.89	-0.2
2,361,831	-				-1.4
2,361,831	-				-0.4
2,361,831	-				-0.1
2,361,831	-				-0.6
2,361,846	+				+0.3
2,361,862	-				+0.3
2,361,950	+				+0.3
2,361,958	-				-2.1
2,361,996	-				+1.8
2,361,996	-				+0.8
2,362,113	-		CCNA_02214	0.27	-0.7
2,362,113	-		CCNA_02214	0.27	-1.3
2,362,113	-		CCNA_02214	0.27	+1.0
2,362,120	+		CCNA_02214	0.29	-0.2
2,362,120	+		CCNA_02214	0.29	-0.8
2,362,122	+		CCNA_02214	0.29	-1.2
2,362,128	-		CCNA_02214	0.30	-0.1
2,362,128	-				+2.6
2,362,128	-		CCNA_02214	0.30	-1.1
2,362,139	+		CCNA_02214	0.33	+0.1
2,362,140	-		CCNA_02214	0.33	-1.1
2,362,148	+		CCNA_02214	0.35	-0.5
2,362,156	-		CCNA_02214	0.37	+0.4
2,362,163	-		CCNA_02214	0.38	-1.3
2,362,168	-		CCNA_02214	0.39	-1.1
2,362,179	-		CCNA_02214	0.42	+1.0
2,362,201	+		CCNA_02214	0.47	+0.3
2,362,209	-		CCNA_02214	0.49	-1.6
2,362,253	-		CCNA_02214	0.59	+0.3
2,362,253	-		CCNA_02214	0.59	-0.7
2,362,253	-		CCNA_02214	0.59	-0.7
2,362,282	+		CCNA_02214	0.65	-2.1
2,362,290	-		CCNA_02214	0.67	-0.2
2,362,290	-		CCNA_02214	0.67	-0.6
2,362,290	-		CCNA_02214	0.67	-1.0
2,362,392	-				-2.1
2,362,397	+				+0.3
2,362,405	-				-0.5
2,362,405	-				-0.9
2,362,407	+				-0.2
2,362,407	+				-1.0
2,362,407	+				+0.9
2,362,407	+				-1.0
2,362,407	+				+0.7
2,362,407	+				+1.6
2,362,407	+				-0.3
2,362,407	+				-1.3
2,362,407	+				-1.0
2,362,407	+				-0.7
2,362,415	-				-0.6
2,362,415	-				-1.1
2,362,415	-				+0.9
2,362,415	-				+0.3
2,362,415	-				+0.3
2,362,415	-				-0.6
2,362,415	-				+1.5
2,362,428	+				+0.6
2,362,428	+				-2.0
2,362,428	+				-1.3
2,362,436	-				+0.2
2,362,462	+				-1.2
2,362,479	+				-1.8
2,362,511	+				-1.2
2,362,560	-				-3.0
2,362,560	-				-0.0
2,362,562	+				-0.7
2,362,570	-				-0.2
2,362,570	-				-1.2
2,362,615	+		CCNA_02215	0.14	-0.7
2,362,664	+		CCNA_02215	0.18	-2.0
2,362,677	-		CCNA_02215	0.19	-1.7
2,362,677	-		CCNA_02215	0.19	+0.4
2,362,677	-		CCNA_02215	0.19	-0.4
2,362,729	+		CCNA_02215	0.23	+1.3
2,362,815	+		CCNA_02215	0.30	-1.1
2,362,852	-		CCNA_02215	0.33	+0.3
2,362,854	+		CCNA_02215	0.33	-1.5
2,362,860	+		CCNA_02215	0.34	+0.2
2,362,910	-		CCNA_02215	0.38	+0.2
2,362,910	-		CCNA_02215	0.38	-2.4
2,362,947	+		CCNA_02215	0.41	+1.3
2,363,003	+		CCNA_02215	0.46	+1.1
2,363,039	+		CCNA_02215	0.49	-0.0
2,363,063	-		CCNA_02215	0.50	+0.3
2,363,081	-		CCNA_02215	0.52	-1.7
2,363,168	+		CCNA_02215	0.59	-1.1
2,363,168	+		CCNA_02215	0.59	+0.5
2,363,173	+		CCNA_02215	0.60	-0.2
2,363,176	-		CCNA_02215	0.60	+0.7
2,363,176	-		CCNA_02215	0.60	+0.6
2,363,186	-		CCNA_02215	0.61	-1.0
2,363,224	+		CCNA_02215	0.64	-1.0
2,363,234	-		CCNA_02215	0.65	-0.4
2,363,243	+		CCNA_02215	0.65	-0.4
2,363,243	+		CCNA_02215	0.65	+1.0
2,363,251	-		CCNA_02215	0.66	-0.5
2,363,271	+		CCNA_02215	0.68	+0.8
2,363,335	+				+1.3
2,363,343	-		CCNA_02215	0.74	+0.9
2,363,380	-		CCNA_02215	0.77	-0.5
2,363,380	-		CCNA_02215	0.77	-1.7
2,363,386	+		CCNA_02215	0.77	+0.9