Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02030

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02029 and CCNA_02030 are separated by 2 nucleotidesCCNA_02030 and CCNA_02031 are separated by 21 nucleotidesCCNA_02031 and CCNA_02032 overlap by 4 nucleotides CCNA_02029: CCNA_02029 - NADH-quinone oxidoreductase chain D, at 2,174,263 to 2,175,513 _02029 CCNA_02030: CCNA_02030 - hypothetical protein, at 2,175,516 to 2,175,911 _02030 CCNA_02031: CCNA_02031 - NADH-quinone oxidoreductase chain C, at 2,175,933 to 2,176,526 _02031 CCNA_02032: CCNA_02032 - NADH-quinone oxidoreductase chain B, at 2,176,523 to 2,177,125 _02032 Position (kb) 2175 2176Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 2175.678 kb on - strand, within CCNA_02030at 2175.782 kb on - strand, within CCNA_02030at 2175.810 kb on - strand, within CCNA_02030at 2175.914 kb on - strandat 2175.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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2,175,678 - CCNA_02030 0.41 +4.8
2,175,782 - CCNA_02030 0.67 +7.5
2,175,810 - CCNA_02030 0.74 +6.4
2,175,914 - +5.9
2,175,941 - +3.5

Or see this region's nucleotide sequence