Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01892

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,032,813	+				+0.8
2,032,841	+				+1.0
2,032,851	+				-0.4
2,032,851	+				-0.8
2,032,859	+		CCNA_01891	0.10	+0.5
2,032,859	+		CCNA_01891	0.10	-0.1
2,032,859	-		CCNA_01891	0.10	-1.5
2,032,859	-		CCNA_01891	0.10	-0.3
2,032,864	+		CCNA_01891	0.11	-0.4
2,032,867	-		CCNA_01891	0.11	-1.3
2,032,872	-		CCNA_01891	0.12	+0.1
2,032,872	-		CCNA_01891	0.12	+0.2
2,032,877	-		CCNA_01891	0.12	+0.6
2,032,877	-		CCNA_01891	0.12	+1.2
2,032,877	-		CCNA_01891	0.12	-1.6
2,032,901	-		CCNA_01891	0.15	+1.6
2,032,911	+		CCNA_01891	0.17	+1.0
2,032,929	-		CCNA_01891	0.19	-0.8
2,032,929	-		CCNA_01891	0.19	+1.5
2,033,073	-		CCNA_01891	0.36	+0.6
2,033,081	-		CCNA_01891	0.37	+0.0
2,033,187	+				+1.5
2,033,195	-		CCNA_01891	0.51	-0.4
2,033,214	-		CCNA_01891	0.53	-0.1
2,033,214	-		CCNA_01891	0.53	+0.1
2,033,214	-		CCNA_01891	0.53	+1.0
2,033,231	-		CCNA_01891	0.55	+0.6
2,033,327	-		CCNA_01891	0.67	-0.4
2,033,355	-		CCNA_01891	0.70	+0.2
2,033,380	-		CCNA_01891	0.73	-1.3
2,033,380	-		CCNA_01891	0.73	-0.6
2,033,384	+		CCNA_01891	0.74	-0.2
2,033,389	+		CCNA_01891	0.74	+2.8
2,033,392	-		CCNA_01891	0.75	+0.2
2,033,397	-		CCNA_01891	0.75	-0.0
2,033,402	-		CCNA_01891	0.76	+0.4
2,033,453	-		CCNA_01891	0.82	+0.2
2,033,567	-				-0.3
2,033,586	-				-0.5
2,033,586	-				-0.6
2,033,616	+				-0.3
2,033,618	-				-0.7
2,033,644	-				+0.9
2,033,680	-				-0.3
2,033,685	-				-0.6
2,033,781	+				+0.5
2,033,781	+				-0.9
2,033,789	-				-0.5
2,033,813	-				+1.2
2,033,848	+		CCNA_01892	0.10	-1.1
2,033,856	-		CCNA_01892	0.11	-0.4
2,033,856	-		CCNA_01892	0.11	-0.8
2,033,908	+		CCNA_01892	0.14	-0.2
2,033,929	+		CCNA_01892	0.15	-0.1
2,033,929	+		CCNA_01892	0.15	-1.5
2,033,937	-		CCNA_01892	0.16	-1.8
2,033,949	+		CCNA_01892	0.16	+1.3
2,033,973	-		CCNA_01892	0.18	-1.3
2,034,006	+		CCNA_01892	0.20	-0.7
2,034,008	+		CCNA_01892	0.20	-0.4
2,034,016	-		CCNA_01892	0.21	-1.2
2,034,016	-		CCNA_01892	0.21	+1.0
2,034,031	+		CCNA_01892	0.21	-1.5
2,034,071	-		CCNA_01892	0.24	+0.8
2,034,103	-		CCNA_01892	0.26	-1.4
2,034,194	-		CCNA_01892	0.31	+0.5
2,034,201	+		CCNA_01892	0.32	+0.5
2,034,214	+		CCNA_01892	0.33	+0.1
2,034,222	-		CCNA_01892	0.33	+0.4
2,034,247	-		CCNA_01892	0.35	-0.5
2,034,263	-		CCNA_01892	0.36	-0.2
2,034,291	-		CCNA_01892	0.37	+2.8
2,034,298	-		CCNA_01892	0.38	+0.4
2,034,338	-		CCNA_01892	0.40	+0.0
2,034,377	+		CCNA_01892	0.43	-0.8
2,034,482	-		CCNA_01892	0.49	-0.6
2,034,501	+		CCNA_01892	0.50	-0.8
2,034,501	+		CCNA_01892	0.50	-1.9
2,034,501	+		CCNA_01892	0.50	-2.0
2,034,501	+		CCNA_01892	0.50	-0.7
2,034,501	+		CCNA_01892	0.50	-1.0
2,034,509	-		CCNA_01892	0.51	-0.6
2,034,509	-		CCNA_01892	0.51	-2.4
2,034,509	-		CCNA_01892	0.51	+0.4
2,034,553	-		CCNA_01892	0.53	-1.3
2,034,630	+		CCNA_01892	0.58	-1.5
2,034,638	-		CCNA_01892	0.58	-0.2
2,034,685	+		CCNA_01892	0.61	-1.0
2,034,693	-		CCNA_01892	0.62	-1.0
2,034,824	+		CCNA_01892	0.70	-1.4
2,034,830	-		CCNA_01892	0.70	-0.5
2,034,832	-		CCNA_01892	0.70	+1.6
2,034,835	+		CCNA_01892	0.70	-1.9
2,034,835	+		CCNA_01892	0.70	+0.0
2,034,835	+		CCNA_01892	0.70	-0.3
2,034,855	+		CCNA_01892	0.72	-0.2
2,034,857	-		CCNA_01892	0.72	+0.8
2,034,897	-		CCNA_01892	0.74	-0.7
2,034,928	-		CCNA_01892	0.76	+0.2
2,034,986	+		CCNA_01892	0.80	+0.2
2,034,994	-		CCNA_01892	0.80	-1.3
2,035,078	+		CCNA_01892	0.85	+0.1
2,035,086	-		CCNA_01892	0.86	-0.6
2,035,124	-		CCNA_01892	0.88	-0.4
2,035,124	-		CCNA_01892	0.88	+0.2
2,035,215	+				-0.2
2,035,249	+				-0.9
2,035,249	+				-1.8
2,035,257	-				+0.1
2,035,257	-				+0.2
2,035,281	+				-0.3
2,035,314	+				-2.6
2,035,328	-				+0.2
2,035,445	+		CCNA_01893	0.20	+0.6
2,035,453	-		CCNA_01893	0.22	+2.2
2,035,464	+		CCNA_01893	0.24	+1.0
2,035,464	+		CCNA_01893	0.24	+0.1
2,035,464	+		CCNA_01893	0.24	+0.6
2,035,478	+		CCNA_01893	0.27	+0.1
2,035,505	+		CCNA_01893	0.31	-0.4
2,035,513	-		CCNA_01893	0.33	-0.2
2,035,513	-		CCNA_01893	0.33	-0.6
2,035,513	-		CCNA_01893	0.33	+0.0
2,035,557	+		CCNA_01893	0.41	+0.5
2,035,631	+		CCNA_01893	0.55	-1.7
2,035,639	-		CCNA_01893	0.56	-1.0
2,035,686	-		CCNA_01893	0.65	-1.9
2,035,699	-		CCNA_01893	0.67	-0.9
2,035,700	-		CCNA_01893	0.67	+1.5
2,035,700	-		CCNA_01893	0.67	-1.9
2,035,846	+				-0.8
2,035,846	+				-0.6
2,035,854	-				+2.2
2,035,857	+				-0.2
2,035,865	-				-0.6
2,035,877	+				-1.3
2,035,877	+				-1.0
2,035,881	+				-0.2
2,035,912	-				-1.1
2,035,932	-				-0.1
2,035,950	+				-0.5
2,035,980	+				+1.8
2,035,980	+				+0.5
2,035,980	+				-0.3
2,035,980	+				+0.8
2,035,988	-				+0.6
2,035,988	-				-1.2
2,035,988	-				+0.4
2,035,990	-				+0.2
2,036,062	+				+0.4
2,036,070	-				+0.8
2,036,070	-				+0.4
2,036,106	+		CCNA_01894	0.11	-0.4
2,036,119	-		CCNA_01894	0.12	+0.4
2,036,129	-				+2.8
2,036,129	-		CCNA_01894	0.12	-1.0
2,036,129	-		CCNA_01894	0.12	-0.3
2,036,129	-		CCNA_01894	0.12	-0.6
2,036,142	-		CCNA_01894	0.13	+0.9
2,036,147	-		CCNA_01894	0.14	-0.7
2,036,151	+		CCNA_01894	0.14	-1.1
2,036,159	-		CCNA_01894	0.14	+0.4
2,036,168	+		CCNA_01894	0.15	-1.6
2,036,177	+		CCNA_01894	0.15	+0.8
2,036,185	-		CCNA_01894	0.16	-0.3
2,036,216	+		CCNA_01894	0.18	+0.8
2,036,270	+		CCNA_01894	0.21	+0.2
2,036,288	-		CCNA_01894	0.22	-1.1
2,036,300	+		CCNA_01894	0.23	+0.5
2,036,306	+		CCNA_01894	0.23	+0.5
2,036,314	-		CCNA_01894	0.24	-1.4