Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01844

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,975,241	-		CCNA_01843	0.50	+0.5
1,975,248	-		CCNA_01843	0.51	+0.4
1,975,258	+		CCNA_01843	0.51	+0.1
1,975,258	+		CCNA_01843	0.51	-0.2
1,975,287	-		CCNA_01843	0.53	-0.6
1,975,311	-		CCNA_01843	0.54	+0.2
1,975,323	+		CCNA_01843	0.55	-0.5
1,975,353	-		CCNA_01843	0.57	+0.3
1,975,357	+		CCNA_01843	0.57	+0.2
1,975,364	-		CCNA_01843	0.58	-1.8
1,975,384	-		CCNA_01843	0.59	-0.1
1,975,392	+		CCNA_01843	0.60	+1.0
1,975,401	-		CCNA_01843	0.60	+0.5
1,975,401	-		CCNA_01843	0.60	-1.8
1,975,504	+		CCNA_01843	0.67	-0.2
1,975,533	+		CCNA_01843	0.69	-0.4
1,975,549	-		CCNA_01843	0.70	-1.3
1,975,574	+		CCNA_01843	0.71	+0.8
1,975,582	-		CCNA_01843	0.72	+0.2
1,975,645	+		CCNA_01843	0.76	+1.1
1,975,658	-		CCNA_01843	0.76	+0.8
1,975,668	+		CCNA_01843	0.77	+0.2
1,975,675	+		CCNA_01843	0.78	+0.1
1,975,676	-		CCNA_01843	0.78	+0.2
1,975,683	-		CCNA_01843	0.78	+1.8
1,975,714	-		CCNA_01843	0.80	-1.2
1,975,737	-		CCNA_01843	0.81	-0.2
1,975,737	-		CCNA_01843	0.81	-1.5
1,975,739	+		CCNA_01843	0.82	+1.5
1,975,762	+		CCNA_01843	0.83	-1.8
1,975,765	+		CCNA_01843	0.83	-0.5
1,975,774	+		CCNA_01843	0.84	-0.4
1,975,782	-		CCNA_01843	0.84	+1.2
1,975,784	-		CCNA_01843	0.84	+0.3
1,975,841	-		CCNA_01843	0.88	+1.6
1,975,849	+		CCNA_01843	0.89	-0.4
1,975,861	+		CCNA_01843	0.89	-0.5
1,975,868	+		CCNA_01843	0.90	-0.7
1,975,868	+		CCNA_01843	0.90	-1.5
1,975,868	+		CCNA_01843	0.90	-0.1
1,975,868	+		CCNA_01843	0.90	+1.9
1,975,868	+		CCNA_01843	0.90	-0.4
1,975,868	+		CCNA_01843	0.90	-0.7
1,975,868	+		CCNA_01843	0.90	+0.3
1,975,868	+		CCNA_01843	0.90	+1.9
1,975,868	+		CCNA_01843	0.90	-1.7
1,975,868	+		CCNA_01843	0.90	-1.4
1,975,868	+		CCNA_01843	0.90	-0.7
1,975,868	+		CCNA_01843	0.90	-0.2
1,975,868	+		CCNA_01843	0.90	-0.7
1,975,868	+		CCNA_01843	0.90	-0.2
1,975,868	+		CCNA_01843	0.90	-0.7
1,975,868	+		CCNA_01843	0.90	-2.9
1,975,876	-				-0.5
1,975,876	-				+0.8
1,975,876	-				+0.1
1,975,876	-				-1.7
1,975,876	-				+0.7
1,975,876	-				-0.6
1,975,876	-				-0.1
1,975,895	+				+1.3
1,975,904	+				+0.8
1,975,941	+				+0.4
1,975,944	-				-0.1
1,975,949	-				-1.5
1,975,949	-				-0.6
1,975,956	+				+1.4
1,975,956	+				+2.3
1,975,964	-				+1.3
1,975,964	-				-0.9
1,975,965	-				-0.1
1,975,985	+				-0.0
1,975,985	+				+0.6
1,975,993	-				-0.2
1,976,153	-				-0.7
1,976,153	-				-0.5
1,976,153	-				-0.9
1,976,163	-				+0.6
1,976,183	-				-0.9
1,976,183	-				+2.3
1,976,191	+				-0.0
1,976,307	-		CCNA_01844	0.21	+0.6
1,976,325	-		CCNA_01844	0.24	-1.5
1,976,325	-		CCNA_01844	0.24	+0.3
1,976,325	-		CCNA_01844	0.24	-1.0
1,976,332	+		CCNA_01844	0.25	-1.3
1,976,348	+		CCNA_01844	0.27	-1.7
1,976,364	-		CCNA_01844	0.30	+0.9
1,976,400	-		CCNA_01844	0.36	-1.1
1,976,409	+		CCNA_01844	0.37	-1.6
1,976,484	-		CCNA_01844	0.49	-1.6
1,976,484	-		CCNA_01844	0.49	+1.1
1,976,517	-		CCNA_01844	0.54	-0.6
1,976,531	+		CCNA_01844	0.56	-1.3
1,976,541	+		CCNA_01844	0.58	+0.9
1,976,564	-		CCNA_01844	0.62	+0.3
1,976,625	-		CCNA_01844	0.71	-0.2
1,976,625	-		CCNA_01844	0.71	-0.9
1,976,626	-		CCNA_01844	0.72	+0.9
1,976,633	-		CCNA_01844	0.73	+0.1
1,976,633	-		CCNA_01844	0.73	-0.6
1,976,649	+		CCNA_01844	0.75	-0.1
1,976,674	-		CCNA_01844	0.79	-0.8
1,976,729	-		CCNA_01844	0.88	-1.3
1,976,734	+		CCNA_01844	0.89	+1.1
1,976,734	+		CCNA_01844	0.89	-0.3
1,976,777	-				+2.3
1,976,810	-				+0.1
1,976,810	-				+0.8
1,976,831	+				-2.0
1,976,837	-				-1.0
1,976,849	+				-1.1
1,976,851	-				-0.7
1,976,862	-				+1.2
1,976,864	+				+0.4
1,976,892	-				+0.7
1,976,924	+				-0.2
1,976,929	+				-1.9
1,976,950	-				-1.5
1,976,971	+				-0.4
1,977,050	-				-0.8
1,977,084	-				-1.1
1,977,123	+				+0.2
1,977,123	+				+1.1
1,977,131	-				+0.4
1,977,131	-				+1.3
1,977,139	-				-1.1
1,977,153	+		CCNA_01845	0.13	+2.7
1,977,190	+		CCNA_01845	0.19	+1.9
1,977,212	+		CCNA_01845	0.24	-1.8
1,977,256	+		CCNA_01845	0.32	-0.3
1,977,294	+		CCNA_01845	0.39	+1.1
1,977,302	-		CCNA_01845	0.40	+0.6
1,977,303	+		CCNA_01845	0.41	+0.9
1,977,329	-		CCNA_01845	0.46	-0.3
1,977,391	+		CCNA_01845	0.57	+1.4
1,977,399	-		CCNA_01845	0.59	-1.1
1,977,423	-		CCNA_01845	0.63	+0.5
1,977,425	+		CCNA_01845	0.63	-1.7
1,977,425	+		CCNA_01845	0.63	-0.4
1,977,433	-		CCNA_01845	0.65	+1.0
1,977,433	-		CCNA_01845	0.65	+0.5
1,977,433	-		CCNA_01845	0.65	-1.3
1,977,433	-		CCNA_01845	0.65	+0.6
1,977,433	-		CCNA_01845	0.65	+0.1
1,977,448	+		CCNA_01845	0.68	+1.9
1,977,456	-		CCNA_01845	0.69	-0.5
1,977,475	+		CCNA_01845	0.73	-0.1
1,977,506	+		CCNA_01845	0.79	-1.0
1,977,513	-		CCNA_01845	0.80	-1.4
1,977,529	+		CCNA_01845	0.83	+0.1
1,977,636	-				+1.0
1,977,718	+				+0.9
1,977,724	-				-1.2
1,977,754	+		CCNA_01846	0.11	-0.6
1,977,761	+		CCNA_01846	0.11	-0.9
1,977,761	+		CCNA_01846	0.11	+1.3
1,977,771	+		CCNA_01846	0.12	+0.7
1,977,771	+		CCNA_01846	0.12	-0.1
1,977,771	+		CCNA_01846	0.12	+0.5
1,977,777	-		CCNA_01846	0.12	+0.1
1,977,779	-		CCNA_01846	0.12	+1.7
1,977,779	-		CCNA_01846	0.12	+0.1
1,977,800	-				+2.3