Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01663

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,781,653	+		CCNA_01660	0.63	-0.3
1,781,653	+		CCNA_01660	0.63	-0.9
1,781,653	+		CCNA_01660	0.63	+0.7
1,781,683	+		CCNA_01660	0.67	+0.5
1,781,746	-		CCNA_01660	0.76	-0.7
1,781,752	+		CCNA_01660	0.77	-0.2
1,781,757	+		CCNA_01660	0.78	+1.1
1,781,760	-		CCNA_01660	0.78	-1.2
1,781,791	+		CCNA_01660	0.83	-0.4
1,781,934	+				-0.5
1,781,934	+				+1.6
1,781,934	+				+0.0
1,781,934	+				+0.5
1,781,942	-				+2.3
1,781,942	-				+0.5
1,782,222	+				-1.6
1,782,230	-				-0.5
1,782,232	+				+1.6
1,782,232	+				+0.8
1,782,240	-				-1.2
1,782,258	+				+0.4
1,782,259	-				+0.0
1,782,263	+				+0.1
1,782,265	-				-1.4
1,782,276	-				+0.0
1,782,290	+				-1.4
1,782,290	+				-0.1
1,782,290	+				+0.0
1,782,290	+				-0.7
1,782,298	-				+1.3
1,782,298	-				-0.6
1,782,298	-				-0.1
1,782,313	-				+0.1
1,782,316	+				-0.5
1,782,319	-				-0.2
1,782,321	+				+1.3
1,782,327	+				-1.0
1,782,335	-				-0.5
1,782,351	+				+1.2
1,782,351	+				-0.4
1,782,351	+				-0.3
1,782,351	+				-1.1
1,782,351	+				-1.1
1,782,359	-				+1.5
1,782,393	-				+0.0
1,782,409	+				-1.4
1,782,424	-				+0.9
1,782,426	+				+1.9
1,782,449	+				-0.2
1,782,451	+				-1.1
1,782,451	+				-1.1
1,782,452	-				-0.9
1,782,459	-				+0.4
1,782,516	-				-1.3
1,782,521	-				+1.6
1,782,555	+				-0.3
1,782,667	-				-0.9
1,782,678	+				-0.8
1,782,687	-				+0.7
1,782,692	-				-0.2
1,782,698	-				+1.1
1,782,779	-				+0.2
1,782,784	+				-0.1
1,782,802	-				+1.2
1,782,802	-				+0.6
1,782,802	-				+0.1
1,782,802	-				+0.6
1,782,802	-				-0.3
1,782,802	-				+0.4
1,782,811	-				-0.7
1,782,828	+		CCNA_01663	0.10	-1.2
1,782,829	+		CCNA_01663	0.10	-2.2
1,782,829	-		CCNA_01663	0.10	+1.1
1,782,836	-		CCNA_01663	0.11	-0.5
1,782,836	-		CCNA_01663	0.11	-0.1
1,782,888	-		CCNA_01663	0.14	-1.5
1,782,893	-		CCNA_01663	0.14	-1.0
1,782,893	-		CCNA_01663	0.14	-1.2
1,782,893	-		CCNA_01663	0.14	+1.0
1,783,027	+		CCNA_01663	0.22	-1.3
1,783,045	+		CCNA_01663	0.23	-0.6
1,783,063	-		CCNA_01663	0.24	-0.5
1,783,110	+		CCNA_01663	0.27	-1.3
1,783,110	+		CCNA_01663	0.27	+0.4
1,783,118	-		CCNA_01663	0.27	-0.2
1,783,118	-		CCNA_01663	0.27	-0.8
1,783,157	+		CCNA_01663	0.30	-1.3
1,783,157	+		CCNA_01663	0.30	-0.1
1,783,157	+		CCNA_01663	0.30	+0.7
1,783,157	+		CCNA_01663	0.30	-0.1
1,783,157	+		CCNA_01663	0.30	-0.4
1,783,157	+		CCNA_01663	0.30	-0.7
1,783,165	-		CCNA_01663	0.30	-0.4
1,783,180	-		CCNA_01663	0.31	+0.7
1,783,183	+		CCNA_01663	0.31	-0.9
1,783,187	+		CCNA_01663	0.31	-0.3
1,783,191	-		CCNA_01663	0.32	+1.6
1,783,195	-		CCNA_01663	0.32	+1.6
1,783,200	+		CCNA_01663	0.32	-0.6
1,783,234	+		CCNA_01663	0.34	-0.1
1,783,234	+		CCNA_01663	0.34	+0.6
1,783,234	+		CCNA_01663	0.34	-1.0
1,783,244	+		CCNA_01663	0.35	-0.5
1,783,245	+		CCNA_01663	0.35	+0.7
1,783,245	+		CCNA_01663	0.35	-0.4
1,783,252	-		CCNA_01663	0.35	+0.0
1,783,253	-		CCNA_01663	0.35	-0.3
1,783,253	-		CCNA_01663	0.35	-1.9
1,783,253	-		CCNA_01663	0.35	+0.7
1,783,283	+		CCNA_01663	0.37	+0.1
1,783,321	+		CCNA_01663	0.39	-1.5
1,783,407	+		CCNA_01663	0.44	-0.4
1,783,416	+		CCNA_01663	0.45	-1.1
1,783,443	+		CCNA_01663	0.46	-0.2
1,783,443	+		CCNA_01663	0.46	+0.0
1,783,443	+		CCNA_01663	0.46	-1.0
1,783,451	-		CCNA_01663	0.47	+0.3
1,783,609	-		CCNA_01663	0.56	-0.5
1,783,625	+		CCNA_01663	0.57	-0.9
1,783,627	-		CCNA_01663	0.57	-0.8
1,783,635	-		CCNA_01663	0.57	-0.3
1,783,661	+		CCNA_01663	0.59	-0.5
1,783,743	+		CCNA_01663	0.64	-0.1
1,783,767	+		CCNA_01663	0.65	-1.8
1,783,821	+		CCNA_01663	0.68	-2.1
1,783,840	+		CCNA_01663	0.69	-0.5
1,783,991	-		CCNA_01663	0.78	+2.5
1,784,029	-		CCNA_01663	0.80	-1.4
1,784,038	-		CCNA_01663	0.81	-0.3
1,784,038	-		CCNA_01663	0.81	-0.9
1,784,038	-		CCNA_01663	0.81	-1.3
1,784,055	+		CCNA_01663	0.82	+0.6
1,784,055	+		CCNA_01663	0.82	+1.1
1,784,063	-		CCNA_01663	0.82	-1.4
1,784,130	+		CCNA_01663	0.86	-1.0
1,784,160	+		CCNA_01663	0.88	-1.5
1,784,160	+		CCNA_01663	0.88	+0.9
1,784,168	-		CCNA_01663	0.89	-0.4
1,784,189	-		CCNA_01663	0.90	-1.0
1,784,192	+				-0.6
1,784,192	+				-0.7
1,784,220	+				+0.6
1,784,266	+				+1.8
1,784,289	-				+1.6
1,784,335	-				+0.5
1,784,335	-				+1.1
1,784,364	+				+0.3
1,784,364	+				+1.6
1,784,365	-				-1.1
1,784,382	+				-0.2
1,784,399	+				+1.9
1,784,412	-				-0.4
1,784,431	+				-1.6
1,784,431	+				+1.1
1,784,441	+				+0.7
1,784,441	+				+0.2
1,784,449	-				+0.8
1,784,449	-				+0.6
1,784,449	-				-0.3
1,784,464	+				-0.6
1,784,475	+				+0.2
1,784,475	+				-0.3
1,784,483	-				-0.8
1,784,483	-				+1.6
1,784,504	+				-0.4
1,784,512	-				-0.4
1,784,564	+				-1.1
1,784,662	-		CCNA_01664	0.14	+0.3
1,784,739	-		CCNA_01664	0.18	-1.4
1,784,769	+		CCNA_01664	0.19	-1.1
1,784,848	-		CCNA_01664	0.23	-0.3
1,784,848	-		CCNA_01664	0.23	+0.1
1,784,848	-		CCNA_01664	0.23	+1.6
1,784,918	+		CCNA_01664	0.26	-1.3
1,784,926	-		CCNA_01664	0.27	-1.0
1,784,943	+		CCNA_01664	0.28	+0.3
1,784,951	-		CCNA_01664	0.28	-0.1
1,784,951	-		CCNA_01664	0.28	+0.9
1,784,980	+		CCNA_01664	0.29	-0.2
1,785,013	+		CCNA_01664	0.31	-0.3
1,785,075	+		CCNA_01664	0.34	-0.3
1,785,080	+		CCNA_01664	0.34	+0.8
1,785,101	+		CCNA_01664	0.35	-0.8
1,785,109	-		CCNA_01664	0.36	+2.9
1,785,118	-		CCNA_01664	0.36	+0.9
1,785,127	+		CCNA_01664	0.36	-1.8
1,785,161	+		CCNA_01664	0.38	+1.9
1,785,169	+		CCNA_01664	0.39	+0.6
1,785,185	-		CCNA_01664	0.39	-0.1
1,785,262	-		CCNA_01664	0.43	-0.5
1,785,271	-		CCNA_01664	0.43	+0.3
1,785,321	-		CCNA_01664	0.46	-0.1
1,785,359	-		CCNA_01664	0.48	-1.8