Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01660

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,780,409	-		CCNA_01659	0.37	+0.1
1,780,476	+		CCNA_01659	0.43	+0.2
1,780,537	+		CCNA_01659	0.49	-1.3
1,780,680	+		CCNA_01659	0.62	+1.6
1,780,680	+		CCNA_01659	0.62	+0.0
1,780,680	+		CCNA_01659	0.62	+0.3
1,780,688	-		CCNA_01659	0.62	-0.5
1,780,757	+		CCNA_01659	0.68	+0.2
1,780,765	-		CCNA_01659	0.69	+0.2
1,780,824	+		CCNA_01659	0.74	+0.5
1,780,824	+		CCNA_01659	0.74	-0.1
1,780,829	+		CCNA_01659	0.75	+0.1
1,780,829	+		CCNA_01659	0.75	+1.1
1,780,830	+		CCNA_01659	0.75	-0.2
1,780,832	-		CCNA_01659	0.75	+0.0
1,780,835	+		CCNA_01659	0.75	+0.7
1,780,955	+		CCNA_01659	0.86	+0.9
1,780,955	+		CCNA_01659	0.86	-1.7
1,780,955	+		CCNA_01659	0.86	-0.7
1,781,194	-				+0.2
1,781,195	-				-1.3
1,781,200	+				-0.8
1,781,205	+				+0.6
1,781,232	-				-0.7
1,781,289	+		CCNA_01660	0.10	-0.2
1,781,289	+		CCNA_01660	0.10	+2.3
1,781,289	+		CCNA_01660	0.10	-0.3
1,781,297	-		CCNA_01660	0.11	-1.8
1,781,297	-		CCNA_01660	0.11	+0.2
1,781,297	-		CCNA_01660	0.11	-0.5
1,781,297	-		CCNA_01660	0.11	-2.2
1,781,346	+		CCNA_01660	0.18	-1.1
1,781,348	-		CCNA_01660	0.19	-0.8
1,781,354	-		CCNA_01660	0.19	-0.6
1,781,354	-		CCNA_01660	0.19	+0.3
1,781,354	-		CCNA_01660	0.19	-1.3
1,781,359	-		CCNA_01660	0.20	-1.3
1,781,379	-		CCNA_01660	0.23	+1.0
1,781,448	+		CCNA_01660	0.33	-0.9
1,781,509	-		CCNA_01660	0.42	-0.2
1,781,525	-		CCNA_01660	0.44	-0.2
1,781,525	-		CCNA_01660	0.44	-2.0
1,781,615	+		CCNA_01660	0.57	-2.1
1,781,615	+		CCNA_01660	0.57	-0.1
1,781,642	-		CCNA_01660	0.61	-1.0
1,781,653	+		CCNA_01660	0.63	-0.3
1,781,653	+		CCNA_01660	0.63	-0.9
1,781,653	+		CCNA_01660	0.63	+0.7
1,781,683	+		CCNA_01660	0.67	+0.5
1,781,746	-		CCNA_01660	0.76	-0.7
1,781,752	+		CCNA_01660	0.77	-0.2
1,781,757	+		CCNA_01660	0.78	+1.1
1,781,760	-		CCNA_01660	0.78	-1.2
1,781,791	+		CCNA_01660	0.83	-0.4
1,781,934	+				-0.5
1,781,934	+				+1.6
1,781,934	+				+0.0
1,781,934	+				+0.5
1,781,942	-				+2.3
1,781,942	-				+0.5
1,782,222	+				-1.6
1,782,230	-				-0.5
1,782,232	+				+1.6
1,782,232	+				+0.8
1,782,240	-				-1.2
1,782,258	+				+0.4
1,782,259	-				+0.0
1,782,263	+				+0.1
1,782,265	-				-1.4
1,782,276	-				+0.0
1,782,290	+				-1.4
1,782,290	+				-0.1
1,782,290	+				+0.0
1,782,290	+				-0.7
1,782,298	-				+1.3
1,782,298	-				-0.6
1,782,298	-				-0.1
1,782,313	-				+0.1
1,782,316	+				-0.5
1,782,319	-				-0.2
1,782,321	+				+1.3
1,782,327	+				-1.0
1,782,335	-				-0.5
1,782,351	+				+1.2
1,782,351	+				-0.4
1,782,351	+				-0.3
1,782,351	+				-1.1
1,782,351	+				-1.1
1,782,359	-				+1.5
1,782,393	-				+0.0
1,782,409	+				-1.4
1,782,424	-				+0.9
1,782,426	+				+1.9
1,782,449	+				-0.2
1,782,451	+				-1.1
1,782,451	+				-1.1
1,782,452	-				-0.9
1,782,459	-				+0.4
1,782,516	-				-1.3
1,782,521	-				+1.6
1,782,555	+				-0.3
1,782,667	-				-0.9
1,782,678	+				-0.8
1,782,687	-				+0.7
1,782,692	-				-0.2
1,782,698	-				+1.1
1,782,779	-				+0.2
1,782,784	+				-0.1
1,782,802	-				+1.2
1,782,802	-				+0.6
1,782,802	-				+0.1
1,782,802	-				+0.6
1,782,802	-				-0.3
1,782,802	-				+0.4
1,782,811	-				-0.7
1,782,828	+		CCNA_01663	0.10	-1.2
1,782,829	+		CCNA_01663	0.10	-2.2
1,782,829	-		CCNA_01663	0.10	+1.1
1,782,836	-		CCNA_01663	0.11	-0.5
1,782,836	-		CCNA_01663	0.11	-0.1
1,782,888	-		CCNA_01663	0.14	-1.5
1,782,893	-		CCNA_01663	0.14	-1.0
1,782,893	-		CCNA_01663	0.14	-1.2
1,782,893	-		CCNA_01663	0.14	+1.0