Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01557

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,672,623	+		CCNA_01556	0.31	+0.9
1,672,628	+		CCNA_01556	0.31	-0.5
1,672,821	+		CCNA_01556	0.49	+0.1
1,672,959	+		CCNA_01556	0.62	-0.1
1,673,357	+				+2.8
1,673,368	+				-0.2
1,673,452	+				+0.7
1,673,481	-				-0.9
1,673,530	+				-0.8
1,673,549	+				+1.1
1,673,562	+				+0.4
1,673,562	+				+0.6
1,673,562	+				+0.3
1,673,562	+				+1.6
1,673,562	+				+1.6
1,673,562	+				-0.8
1,673,562	+				-0.6
1,673,562	+				-0.0
1,673,562	+				+0.5
1,673,570	-				-0.4
1,673,570	-				+0.9
1,673,570	-				-0.9
1,673,571	-				-0.5
1,673,722	+		CCNA_01557	0.17	-1.2
1,673,795	-		CCNA_01557	0.22	+0.6
1,673,811	+		CCNA_01557	0.23	-2.1
1,673,816	+		CCNA_01557	0.23	+0.7
1,673,860	-		CCNA_01557	0.26	+0.1
1,673,901	+		CCNA_01557	0.29	+0.4
1,673,963	-		CCNA_01557	0.33	+1.4
1,673,963	-		CCNA_01557	0.33	+0.1
1,673,987	+		CCNA_01557	0.35	-0.5
1,673,987	-		CCNA_01557	0.35	+1.0
1,674,009	-		CCNA_01557	0.36	+0.1
1,674,029	-		CCNA_01557	0.38	-0.2
1,674,043	+		CCNA_01557	0.39	+0.8
1,674,121	+		CCNA_01557	0.44	-1.7
1,674,142	+		CCNA_01557	0.45	-0.8
1,674,147	-		CCNA_01557	0.46	+0.4
1,674,150	-		CCNA_01557	0.46	-1.3
1,674,150	-		CCNA_01557	0.46	-0.9
1,674,161	+		CCNA_01557	0.47	-1.3
1,674,221	+		CCNA_01557	0.51	-1.2
1,674,228	+		CCNA_01557	0.51	+0.8
1,674,260	-		CCNA_01557	0.54	-0.1
1,674,295	-		CCNA_01557	0.56	+0.6
1,674,308	+		CCNA_01557	0.57	-1.5
1,674,343	-		CCNA_01557	0.59	+1.9
1,674,365	+		CCNA_01557	0.61	+0.5
1,674,398	-		CCNA_01557	0.63	-1.7
1,674,398	-		CCNA_01557	0.63	-0.2
1,674,414	+		CCNA_01557	0.64	-1.3
1,674,437	-		CCNA_01557	0.66	-0.9
1,674,526	-		CCNA_01557	0.72	-1.1
1,674,565	+		CCNA_01557	0.74	-0.7
1,674,565	+		CCNA_01557	0.74	+0.1
1,674,565	+		CCNA_01557	0.74	+0.1
1,674,565	+		CCNA_01557	0.74	+0.4
1,674,565	+		CCNA_01557	0.74	-0.5
1,674,573	-		CCNA_01557	0.75	+1.6
1,674,591	+		CCNA_01557	0.76	+0.0
1,674,634	+		CCNA_01557	0.79	-0.3
1,674,634	+		CCNA_01557	0.79	+0.2
1,674,684	-		CCNA_01557	0.83	-1.1
1,674,696	+		CCNA_01557	0.83	-0.4
1,674,702	-		CCNA_01557	0.84	+1.4
1,674,766	-		CCNA_01557	0.88	+0.9
1,674,817	+				-0.9
1,674,827	+				+0.4
1,674,835	+				+0.3
1,674,852	+				-0.3
1,674,862	-				+0.4
1,674,862	-				+1.0
1,674,862	-				+0.3
1,674,911	+				-1.5
1,674,919	-				-1.0
1,674,929	+				-1.7
1,674,934	+				+0.0
1,674,977	+				-2.5
1,675,054	-		CCNA_01558	0.11	+0.1
1,675,056	+		CCNA_01558	0.11	-0.5
1,675,056	+		CCNA_01558	0.11	-1.4
1,675,056	+		CCNA_01558	0.11	+0.5
1,675,056	+		CCNA_01558	0.11	+1.0
1,675,056	+		CCNA_01558	0.11	+1.0
1,675,082	+		CCNA_01558	0.14	+0.3
1,675,094	-		CCNA_01558	0.15	-2.2
1,675,124	+		CCNA_01558	0.19	+0.1
1,675,133	-		CCNA_01558	0.20	+0.8
1,675,204	+		CCNA_01558	0.29	-0.2
1,675,236	+		CCNA_01558	0.32	-0.7
1,675,294	-		CCNA_01558	0.39	-0.9
1,675,347	-		CCNA_01558	0.46	+0.4
1,675,349	-		CCNA_01558	0.46	-1.5
1,675,400	-		CCNA_01558	0.52	+0.2
1,675,436	+		CCNA_01558	0.56	-0.5
1,675,459	-		CCNA_01558	0.59	-0.6
1,675,503	+		CCNA_01558	0.64	-0.6
1,675,512	-		CCNA_01558	0.65	+0.4
1,675,514	+		CCNA_01558	0.65	+0.4
1,675,539	-		CCNA_01558	0.68	-0.3
1,675,547	+		CCNA_01558	0.69	-1.1
1,675,611	+		CCNA_01558	0.77	-0.6
1,675,620	-		CCNA_01558	0.78	-0.7
1,675,620	-		CCNA_01558	0.78	+0.6
1,675,644	-		CCNA_01558	0.81	-1.6
1,675,672	+		CCNA_01558	0.84	+0.6
1,675,705	+		CCNA_01558	0.88	+1.3
1,675,705	+		CCNA_01558	0.88	+0.5
1,675,705	+		CCNA_01558	0.88	+0.8
1,675,705	+		CCNA_01558	0.88	+1.2
1,675,705	+		CCNA_01558	0.88	+1.0
1,675,705	+		CCNA_01558	0.88	-0.0
1,675,705	+		CCNA_01558	0.88	+0.1
1,675,713	-		CCNA_01558	0.89	+1.6
1,675,723	-				+0.5
1,675,726	+				+0.8
1,675,726	+				-0.2
1,675,734	-				-1.3
1,675,734	-				+0.1
1,675,734	-				+1.6
1,675,737	+				-0.8
1,675,771	-				+1.1
1,675,802	-				-0.9
1,675,819	-				-1.2
1,675,846	+				+0.7
1,675,864	+				-2.2
1,675,905	-				+0.5