Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01515

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,623,339	+		CCNA_01513	0.50	-0.4
1,623,339	+		CCNA_01513	0.50	+1.0
1,623,339	+		CCNA_01513	0.50	+1.1
1,623,339	+		CCNA_01513	0.50	+0.2
1,623,347	-		CCNA_01513	0.51	-0.7
1,623,375	+		CCNA_01513	0.54	-1.4
1,623,396	+		CCNA_01513	0.56	-0.3
1,623,415	+		CCNA_01513	0.58	-0.9
1,623,417	+		CCNA_01513	0.58	-0.3
1,623,442	+		CCNA_01513	0.61	-1.1
1,623,450	-		CCNA_01513	0.62	-0.0
1,623,452	-		CCNA_01513	0.62	-0.4
1,623,472	+		CCNA_01513	0.64	-1.1
1,623,485	+		CCNA_01513	0.65	-0.3
1,623,517	+		CCNA_01513	0.68	-0.9
1,623,517	+		CCNA_01513	0.68	+1.5
1,623,541	-		CCNA_01513	0.71	-1.6
1,623,554	-		CCNA_01513	0.72	-1.5
1,623,569	+		CCNA_01513	0.74	-1.3
1,623,569	+		CCNA_01513	0.74	-0.2
1,623,577	-		CCNA_01513	0.75	+0.1
1,623,577	-		CCNA_01513	0.75	+1.3
1,623,577	-		CCNA_01513	0.75	-1.8
1,623,577	-		CCNA_01513	0.75	-1.2
1,623,577	-		CCNA_01513	0.75	+0.4
1,623,579	+		CCNA_01513	0.75	-0.4
1,623,589	+		CCNA_01513	0.76	-1.1
1,623,589	+		CCNA_01513	0.76	+1.0
1,623,597	-		CCNA_01513	0.77	+0.6
1,623,597	-		CCNA_01513	0.77	+1.3
1,623,597	-		CCNA_01513	0.77	+0.7
1,623,655	+		CCNA_01513	0.83	-0.3
1,623,659	-		CCNA_01513	0.83	-1.7
1,623,673	-		CCNA_01513	0.84	+1.6
1,623,719	+		CCNA_01513	0.89	+0.4
1,623,744	+				-1.6
1,623,777	-				+0.3
1,623,777	-				-0.1
1,623,808	+				-1.8
1,623,821	+				+0.8
1,623,826	+				+0.7
1,623,826	+				+0.5
1,623,829	-				-1.7
1,623,829	-				+2.3
1,623,834	-				-0.1
1,623,834	-				-1.4
1,623,834	-				-1.7
1,623,871	+				-0.5
1,623,871	+				-0.9
1,623,871	+				-1.4
1,623,871	+				+0.2
1,623,871	+				-1.7
1,623,871	+				-0.7
1,623,879	-		CCNA_01514	0.11	-1.2
1,623,936	-		CCNA_01514	0.23	+1.9
1,623,960	+		CCNA_01514	0.27	-0.7
1,623,984	+		CCNA_01514	0.32	-0.3
1,624,003	+		CCNA_01514	0.36	-2.0
1,624,006	-		CCNA_01514	0.37	+1.6
1,624,046	-		CCNA_01514	0.45	-1.5
1,624,103	+		CCNA_01514	0.56	+0.9
1,624,127	+		CCNA_01514	0.61	-0.8
1,624,127	+		CCNA_01514	0.61	-1.3
1,624,135	-		CCNA_01514	0.62	+0.6
1,624,137	+		CCNA_01514	0.63	-0.5
1,624,137	+		CCNA_01514	0.63	+0.1
1,624,145	-		CCNA_01514	0.64	+0.1
1,624,172	+		CCNA_01514	0.70	+2.3
1,624,176	-		CCNA_01514	0.70	+0.6
1,624,181	-		CCNA_01514	0.71	-1.3
1,624,196	+		CCNA_01514	0.74	+1.3
1,624,243	+		CCNA_01514	0.84	+1.6
1,624,312	+				+1.3
1,624,317	+				+2.9
1,624,339	-				-0.8
1,624,345	+				+1.1
1,624,353	-				+0.1
1,624,363	-				+0.5
1,624,376	-				+2.1
1,624,406	-				-0.3
1,624,426	+				-1.5
1,624,430	+				+0.7
1,624,466	-		CCNA_01515	0.12	-0.2
1,624,569	+		CCNA_01515	0.20	+1.7
1,624,596	+		CCNA_01515	0.22	-1.1
1,624,619	+		CCNA_01515	0.24	+0.0
1,624,661	-		CCNA_01515	0.27	+0.6
1,624,661	-		CCNA_01515	0.27	-1.6
1,624,666	+		CCNA_01515	0.27	-1.7
1,624,679	-		CCNA_01515	0.28	+0.7
1,624,721	+		CCNA_01515	0.32	-1.4
1,624,772	-		CCNA_01515	0.36	-1.5
1,624,791	+		CCNA_01515	0.37	+2.3
1,624,886	+		CCNA_01515	0.45	-0.9
1,625,051	+		CCNA_01515	0.58	-0.3
1,625,051	+		CCNA_01515	0.58	+1.3
1,625,051	+		CCNA_01515	0.58	-0.6
1,625,051	+		CCNA_01515	0.58	-2.2
1,625,051	+		CCNA_01515	0.58	-0.3
1,625,051	+		CCNA_01515	0.58	+2.9
1,625,059	-		CCNA_01515	0.58	+0.3
1,625,059	-		CCNA_01515	0.58	-0.4
1,625,071	+		CCNA_01515	0.59	-1.6
1,625,112	-		CCNA_01515	0.62	+0.7
1,625,130	+		CCNA_01515	0.64	-0.5
1,625,130	+		CCNA_01515	0.64	-1.4
1,625,138	-		CCNA_01515	0.64	-0.5
1,625,138	-		CCNA_01515	0.64	+0.9
1,625,138	-		CCNA_01515	0.64	-0.3
1,625,176	+		CCNA_01515	0.67	-0.1
1,625,275	+		CCNA_01515	0.75	-0.8
1,625,275	+		CCNA_01515	0.75	+0.3
1,625,283	-		CCNA_01515	0.76	-0.2
1,625,308	+		CCNA_01515	0.78	+0.7
1,625,375	-		CCNA_01515	0.83	+0.1
1,625,387	-		CCNA_01515	0.84	-0.6
1,625,416	-		CCNA_01515	0.86	-0.5
1,625,433	+		CCNA_01515	0.87	+0.4
1,625,440	+		CCNA_01515	0.88	+0.6
1,625,448	-		CCNA_01515	0.89	-1.9
1,625,474	+				+0.6
1,625,479	+				-0.1
1,625,482	-				-0.5
1,625,482	-				-1.4
1,625,482	-				-0.3
1,625,482	-				-1.0
1,625,510	-				-2.4
1,625,510	-				-1.1
1,625,515	+				-0.4
1,625,528	-				-0.4
1,625,548	+				+0.3
1,625,565	+				-0.0
1,625,573	-				-0.1
1,625,573	-				+1.9
1,625,574	+				+1.5
1,625,574	+				+1.6
1,625,642	-				-0.8
1,625,651	+				-0.3
1,625,651	+				-1.8
1,625,660	+				-1.1
1,625,660	+				+1.4
1,625,660	+				+1.9
1,625,660	+				+0.1
1,625,660	+				-0.9
1,625,668	-				-0.3
1,625,706	+				+0.7
1,625,714	+				+1.3
1,625,719	+				+0.2
1,625,719	+				-0.9
1,625,719	+				+0.4
1,625,719	+				+0.7
1,625,719	+				-0.5
1,625,719	+				+1.3
1,625,719	+				+0.3
1,625,727	-				-0.8
1,625,727	-				-0.4
1,625,727	-				+0.6
1,625,727	-				+0.7
1,625,727	-				-1.1
1,625,727	-				-0.8
1,625,773	+				-1.8
1,625,781	-				+1.5
1,625,847	+		CCNA_01516	0.11	-0.3
1,625,910	-		CCNA_01516	0.21	+2.7
1,625,929	-		CCNA_01516	0.24	+1.1
1,625,936	-		CCNA_01516	0.25	+0.5
1,625,943	-		CCNA_01516	0.26	-0.6
1,625,967	-		CCNA_01516	0.30	+0.6
1,625,969	+		CCNA_01516	0.30	+1.1
1,625,977	-		CCNA_01516	0.31	-1.2
1,625,984	+		CCNA_01516	0.32	-0.8
1,626,006	+		CCNA_01516	0.36	+0.6
1,626,014	-		CCNA_01516	0.37	+0.8
1,626,118	-		CCNA_01516	0.53	+0.6
1,626,118	-		CCNA_01516	0.53	-2.3
1,626,151	+		CCNA_01516	0.59	-0.2
1,626,163	+		CCNA_01516	0.61	-1.0
1,626,167	+		CCNA_01516	0.61	-0.3
1,626,167	+		CCNA_01516	0.61	-0.2
1,626,198	-		CCNA_01516	0.66	-1.1
1,626,212	+		CCNA_01516	0.68	-0.2
1,626,217	+		CCNA_01516	0.69	-2.5
1,626,231	+		CCNA_01516	0.71	-0.5
1,626,231	+		CCNA_01516	0.71	-0.7
1,626,232	-		CCNA_01516	0.71	-2.0
1,626,268	-		CCNA_01516	0.77	+0.9
1,626,299	+		CCNA_01516	0.82	+0.2
1,626,301	-		CCNA_01516	0.82	-1.1
1,626,329	-		CCNA_01516	0.87	+0.9
1,626,336	+		CCNA_01516	0.88	-1.5
1,626,344	-		CCNA_01516	0.89	-0.4
1,626,354	+				+0.5
1,626,514	+				+0.0
1,626,514	+				-0.5
1,626,521	+				-0.5
1,626,527	-				-2.8
1,626,529	-				+1.5
1,626,554	-				-0.5
1,626,584	-				+1.5