Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01489

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,595,785	+		CCNA_01488	0.54	+1.4
1,595,791	-		CCNA_01488	0.54	+0.9
1,595,839	+		CCNA_01488	0.57	+0.6
1,595,858	+		CCNA_01488	0.58	+0.7
1,595,877	+		CCNA_01488	0.59	+0.5
1,595,877	+		CCNA_01488	0.59	-0.7
1,595,877	+		CCNA_01488	0.59	-0.5
1,595,892	+		CCNA_01488	0.60	-0.5
1,595,892	+		CCNA_01488	0.60	-1.1
1,595,979	+		CCNA_01488	0.65	+0.4
1,595,986	+		CCNA_01488	0.65	+0.5
1,595,988	+		CCNA_01488	0.65	+0.7
1,595,994	-		CCNA_01488	0.66	-0.3
1,595,994	-		CCNA_01488	0.66	+1.5
1,595,994	-		CCNA_01488	0.66	-1.9
1,596,001	+		CCNA_01488	0.66	+1.5
1,596,013	+		CCNA_01488	0.67	+0.6
1,596,016	-		CCNA_01488	0.67	-0.9
1,596,031	-		CCNA_01488	0.68	-2.5
1,596,109	-		CCNA_01488	0.72	-0.6
1,596,113	+		CCNA_01488	0.72	-1.7
1,596,121	-		CCNA_01488	0.73	-0.7
1,596,121	-		CCNA_01488	0.73	+0.1
1,596,181	+		CCNA_01488	0.76	+0.2
1,596,194	+		CCNA_01488	0.77	+1.4
1,596,194	+		CCNA_01488	0.77	-1.2
1,596,296	+		CCNA_01488	0.82	-1.4
1,596,304	-		CCNA_01488	0.83	-0.6
1,596,307	+		CCNA_01488	0.83	-0.4
1,596,307	+		CCNA_01488	0.83	+1.0
1,596,315	+		CCNA_01488	0.83	+0.7
1,596,334	-		CCNA_01488	0.84	+0.4
1,596,350	+		CCNA_01488	0.85	-0.5
1,596,360	+		CCNA_01488	0.86	-1.3
1,596,360	+		CCNA_01488	0.86	-2.1
1,596,360	+		CCNA_01488	0.86	-1.8
1,596,368	-		CCNA_01488	0.86	+0.5
1,596,368	-		CCNA_01488	0.86	+1.1
1,596,368	-		CCNA_01488	0.86	+0.2
1,596,391	-		CCNA_01488	0.88	+0.5
1,596,391	-		CCNA_01488	0.88	+0.0
1,596,391	-		CCNA_01488	0.88	-1.2
1,596,556	-				+0.7
1,596,580	+				-1.0
1,596,585	+				+1.3
1,596,585	+				+0.1
1,596,585	+				-2.3
1,596,585	+				-1.2
1,596,585	+				+0.9
1,596,585	+				-1.6
1,596,585	+				-0.2
1,596,593	-				-0.0
1,596,593	-				+0.5
1,596,684	+				+0.3
1,596,692	-				-0.3
1,596,692	-				+2.0
1,596,700	-				+0.7
1,596,705	-				-0.8
1,596,791	+				-0.1
1,596,860	+				+0.4
1,596,900	+		CCNA_01489	0.11	+0.3
1,596,981	+		CCNA_01489	0.16	+0.9
1,596,984	-		CCNA_01489	0.17	-0.5
1,596,984	-		CCNA_01489	0.17	-1.2
1,596,994	-		CCNA_01489	0.17	-0.3
1,597,019	+		CCNA_01489	0.19	-1.7
1,597,027	+		CCNA_01489	0.19	+0.4
1,597,041	+		CCNA_01489	0.20	+0.9
1,597,049	-		CCNA_01489	0.21	+0.2
1,597,049	-		CCNA_01489	0.21	-1.6
1,597,097	+		CCNA_01489	0.24	+1.1
1,597,105	-		CCNA_01489	0.24	+0.4
1,597,127	-		CCNA_01489	0.26	-0.7
1,597,147	+		CCNA_01489	0.27	+0.7
1,597,209	+		CCNA_01489	0.31	-1.7
1,597,220	+		CCNA_01489	0.32	+0.4
1,597,225	-		CCNA_01489	0.32	-1.3
1,597,251	-		CCNA_01489	0.34	-0.0
1,597,357	-		CCNA_01489	0.41	-2.1
1,597,359	-		CCNA_01489	0.41	+0.7
1,597,361	+		CCNA_01489	0.41	-1.5
1,597,458	-		CCNA_01489	0.47	+0.2
1,597,463	-		CCNA_01489	0.47	-1.6
1,597,476	-		CCNA_01489	0.48	-0.2
1,597,510	+		CCNA_01489	0.50	+1.4
1,597,510	+		CCNA_01489	0.50	-1.9
1,597,510	+		CCNA_01489	0.50	-0.7
1,597,510	+		CCNA_01489	0.50	-3.3
1,597,510	+		CCNA_01489	0.50	-1.0
1,597,518	-		CCNA_01489	0.51	+0.5
1,597,555	-		CCNA_01489	0.53	+0.1
1,597,582	-		CCNA_01489	0.55	-0.2
1,597,593	-		CCNA_01489	0.56	+1.0
1,597,618	+		CCNA_01489	0.57	+0.9
1,597,637	+		CCNA_01489	0.59	-0.9
1,597,645	-		CCNA_01489	0.59	+1.3
1,597,655	+		CCNA_01489	0.60	+0.2
1,597,679	-		CCNA_01489	0.61	+0.3
1,597,707	-		CCNA_01489	0.63	+1.5
1,597,717	+		CCNA_01489	0.64	-0.2
1,597,741	+		CCNA_01489	0.65	+1.1
1,597,741	+		CCNA_01489	0.65	-0.7
1,597,819	+		CCNA_01489	0.70	+0.1
1,597,909	+		CCNA_01489	0.76	-1.4
1,597,915	-		CCNA_01489	0.77	+1.5
1,597,933	+		CCNA_01489	0.78	+0.5
1,597,991	+		CCNA_01489	0.81	-0.0
1,597,991	+		CCNA_01489	0.81	+0.7
1,597,999	+		CCNA_01489	0.82	+0.7
1,598,020	+		CCNA_01489	0.83	+0.9
1,598,020	+		CCNA_01489	0.83	+1.3
1,598,028	-		CCNA_01489	0.84	+0.9
1,598,028	-		CCNA_01489	0.84	+1.1
1,598,028	-		CCNA_01489	0.84	+0.3
1,598,060	+		CCNA_01489	0.86	-0.5
1,598,063	+		CCNA_01489	0.86	-2.2
1,598,068	-		CCNA_01489	0.86	+1.0
1,598,071	-		CCNA_01489	0.87	-0.7
1,598,071	-		CCNA_01489	0.87	-0.4
1,598,081	-		CCNA_01489	0.87	-0.3
1,598,107	+		CCNA_01489	0.89	-1.2
1,598,128	+				+0.7
1,598,212	+				+0.5
1,598,231	+				+2.0
1,598,261	+				+0.4
1,598,308	-				-1.5
1,598,324	-				+1.3
1,598,344	+				+1.1
1,598,430	-				-0.2
1,598,479	-				+0.5
1,598,507	+				+0.7
1,598,515	-		CCNA_01490	0.10	+0.7
1,598,529	-		CCNA_01490	0.11	+0.1
1,598,555	-		CCNA_01490	0.13	+0.4
1,598,558	+		CCNA_01490	0.13	+0.3
1,598,558	+		CCNA_01490	0.13	+1.2
1,598,590	-		CCNA_01490	0.15	-0.5
1,598,598	+		CCNA_01490	0.15	-0.6
1,598,606	-		CCNA_01490	0.16	-1.6
1,598,659	+		CCNA_01490	0.19	-0.6
1,598,667	-		CCNA_01490	0.19	+0.5
1,598,667	-		CCNA_01490	0.19	-0.1
1,598,668	+		CCNA_01490	0.19	-0.2
1,598,668	+		CCNA_01490	0.19	-1.2
1,598,672	-		CCNA_01490	0.20	-0.5
1,598,676	-		CCNA_01490	0.20	+1.5
1,598,686	+		CCNA_01490	0.21	-0.7
1,598,707	+		CCNA_01490	0.22	-0.0
1,598,732	+		CCNA_01490	0.23	+1.2
1,598,762	+		CCNA_01490	0.25	-0.1
1,598,764	+		CCNA_01490	0.25	-0.0
1,598,764	+		CCNA_01490	0.25	+0.3
1,598,764	+		CCNA_01490	0.25	+0.2
1,598,764	+		CCNA_01490	0.25	-0.8
1,598,772	+		CCNA_01490	0.26	+0.1
1,598,837	-		CCNA_01490	0.30	+1.0
1,598,895	+		CCNA_01490	0.33	+0.8
1,598,903	-		CCNA_01490	0.34	+0.6
1,598,904	-		CCNA_01490	0.34	+2.4
1,598,909	+		CCNA_01490	0.34	+1.9
1,598,915	+		CCNA_01490	0.34	-0.2
1,598,933	+		CCNA_01490	0.36	+1.0
1,598,965	-		CCNA_01490	0.38	+0.9
1,598,984	-		CCNA_01490	0.39	-1.5
1,598,985	+		CCNA_01490	0.39	+1.0
1,598,992	-		CCNA_01490	0.39	-0.1
1,599,007	+		CCNA_01490	0.40	+1.5
1,599,051	+		CCNA_01490	0.43	-0.1
1,599,096	+		CCNA_01490	0.46	+0.2
1,599,101	+		CCNA_01490	0.46	+0.5
1,599,101	+		CCNA_01490	0.46	+0.9
1,599,109	-		CCNA_01490	0.46	-0.7
1,599,141	+		CCNA_01490	0.48	-0.3
1,599,152	+		CCNA_01490	0.49	-1.6
1,599,155	-		CCNA_01490	0.49	+0.9
1,599,175	+		CCNA_01490	0.50	+0.3
1,599,207	-		CCNA_01490	0.52	+0.6
1,599,211	-		CCNA_01490	0.53	-0.7
1,599,221	+		CCNA_01490	0.53	+0.6