Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01486

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,591,723	+		CCNA_01485	0.16	-3.2
1,591,723	+		CCNA_01485	0.16	-0.3
1,591,731	-		CCNA_01485	0.17	-2.1
1,591,736	-		CCNA_01485	0.18	+0.2
1,591,821	-		CCNA_01485	0.25	-1.0
1,591,835	-		CCNA_01485	0.26	+1.9
1,591,835	-		CCNA_01485	0.26	-0.3
1,591,835	-		CCNA_01485	0.26	-1.8
1,591,847	-		CCNA_01485	0.27	-0.7
1,591,866	+		CCNA_01485	0.29	-0.8
1,591,868	+		CCNA_01485	0.29	-0.5
1,591,868	+		CCNA_01485	0.29	-0.7
1,591,915	-		CCNA_01485	0.33	-1.8
1,591,940	+		CCNA_01485	0.36	-0.2
1,591,945	+		CCNA_01485	0.36	+0.2
1,591,953	-		CCNA_01485	0.37	+1.5
1,591,953	-		CCNA_01485	0.37	-1.0
1,591,960	+		CCNA_01485	0.37	+0.9
1,591,970	+		CCNA_01485	0.38	-1.0
1,591,970	+		CCNA_01485	0.38	-0.8
1,591,970	+		CCNA_01485	0.38	-0.4
1,591,985	+		CCNA_01485	0.39	+0.6
1,591,993	-		CCNA_01485	0.40	-1.0
1,592,007	+		CCNA_01485	0.41	+0.9
1,592,015	-		CCNA_01485	0.42	+0.4
1,592,022	-		CCNA_01485	0.43	-0.5
1,592,061	-		CCNA_01485	0.46	+1.3
1,592,063	+		CCNA_01485	0.46	-0.1
1,592,063	-		CCNA_01485	0.46	+0.3
1,592,071	-		CCNA_01485	0.47	-0.3
1,592,078	+		CCNA_01485	0.48	+0.0
1,592,078	+		CCNA_01485	0.48	-0.2
1,592,086	-		CCNA_01485	0.48	+0.6
1,592,146	+		CCNA_01485	0.54	-1.3
1,592,176	+		CCNA_01485	0.56	+0.5
1,592,184	-		CCNA_01485	0.57	+0.7
1,592,231	+		CCNA_01485	0.61	-0.1
1,592,234	-		CCNA_01485	0.61	+0.9
1,592,236	+		CCNA_01485	0.62	+1.0
1,592,254	+		CCNA_01485	0.63	-0.7
1,592,276	-		CCNA_01485	0.65	-0.4
1,592,282	-		CCNA_01485	0.66	-0.1
1,592,284	-		CCNA_01485	0.66	-0.1
1,592,289	+		CCNA_01485	0.66	+0.2
1,592,289	+		CCNA_01485	0.66	-0.0
1,592,313	+		CCNA_01485	0.68	+0.2
1,592,313	+		CCNA_01485	0.68	+0.5
1,592,321	-		CCNA_01485	0.69	-1.6
1,592,321	-		CCNA_01485	0.69	+1.2
1,592,321	-		CCNA_01485	0.69	-1.4
1,592,321	-		CCNA_01485	0.69	+0.3
1,592,423	-		CCNA_01485	0.78	-0.3
1,592,439	+		CCNA_01485	0.79	-0.1
1,592,439	+		CCNA_01485	0.79	+0.0
1,592,447	-		CCNA_01485	0.80	-0.4
1,592,447	-		CCNA_01485	0.80	+1.3
1,592,490	+		CCNA_01485	0.84	-2.0
1,592,490	+		CCNA_01485	0.84	-1.7
1,592,490	+		CCNA_01485	0.84	-0.8
1,592,490	+		CCNA_01485	0.84	-2.2
1,592,498	-		CCNA_01485	0.85	-0.4
1,592,501	+		CCNA_01485	0.85	+0.9
1,592,509	-		CCNA_01485	0.86	+1.3
1,592,509	-		CCNA_01485	0.86	+0.9
1,592,516	+		CCNA_01485	0.86	+1.4
1,592,518	+		CCNA_01485	0.86	-0.4
1,592,536	+		CCNA_01485	0.88	+0.2
1,592,541	+		CCNA_01485	0.88	+1.5
1,592,544	-		CCNA_01485	0.89	-0.7
1,592,546	+		CCNA_01485	0.89	-1.3
1,592,553	+		CCNA_01485	0.89	-0.8
1,592,554	-		CCNA_01485	0.90	+1.5
1,592,554	-		CCNA_01485	0.90	+0.5
1,592,580	-				-2.3
1,592,610	+				+1.0
1,592,611	+				-0.6
1,592,628	-				-1.5
1,592,631	+				-0.7
1,592,639	-				-0.1
1,592,639	-				-0.4
1,592,639	-				+0.9
1,592,654	-				-0.8
1,592,654	-				+0.5
1,592,659	-				+0.4
1,592,710	+				-0.4
1,592,718	-				-0.9
1,592,739	+				+0.7
1,592,760	-				+2.3
1,592,764	-				-0.1
1,592,771	+				-0.7
1,592,779	-				-0.5
1,592,779	-				+0.9
1,592,779	-				+1.9
1,592,797	-				-2.1
1,592,850	-		CCNA_01486	0.14	-0.2
1,592,852	+		CCNA_01486	0.14	-0.4
1,592,855	-		CCNA_01486	0.14	+0.3
1,592,865	+		CCNA_01486	0.15	+0.3
1,592,895	+		CCNA_01486	0.18	+0.2
1,592,916	+		CCNA_01486	0.20	-0.6
1,592,916	+		CCNA_01486	0.20	+0.7
1,592,921	+		CCNA_01486	0.21	-0.2
1,592,924	-		CCNA_01486	0.21	-1.5
1,592,924	-		CCNA_01486	0.21	+0.0
1,592,924	-		CCNA_01486	0.21	-0.4
1,592,927	+		CCNA_01486	0.21	-0.1
1,592,935	+		CCNA_01486	0.22	-0.7
1,592,955	-				+1.9
1,592,965	+		CCNA_01486	0.25	-0.1
1,592,980	+		CCNA_01486	0.26	-0.8
1,592,988	-		CCNA_01486	0.27	-0.9
1,592,988	-		CCNA_01486	0.27	-0.5
1,593,045	-		CCNA_01486	0.33	+2.9
1,593,053	-		CCNA_01486	0.34	-0.4
1,593,080	-		CCNA_01486	0.36	-1.0
1,593,089	-		CCNA_01486	0.37	-1.0
1,593,139	+		CCNA_01486	0.42	-0.8
1,593,147	-		CCNA_01486	0.43	+0.0
1,593,147	-		CCNA_01486	0.43	-0.5
1,593,151	+		CCNA_01486	0.43	-0.1
1,593,158	-		CCNA_01486	0.44	-2.0
1,593,246	+		CCNA_01486	0.53	-1.1
1,593,251	+		CCNA_01486	0.53	-1.0
1,593,254	-		CCNA_01486	0.54	-1.4
1,593,269	-		CCNA_01486	0.55	+0.0
1,593,269	-		CCNA_01486	0.55	+0.9
1,593,331	+		CCNA_01486	0.61	-1.6
1,593,353	+		CCNA_01486	0.63	-0.4
1,593,373	-		CCNA_01486	0.65	-1.7
1,593,375	+		CCNA_01486	0.65	-0.5
1,593,385	+		CCNA_01486	0.66	-1.3
1,593,385	+		CCNA_01486	0.66	-0.5
1,593,385	+		CCNA_01486	0.66	+3.0
1,593,385	+		CCNA_01486	0.66	+0.3
1,593,391	+		CCNA_01486	0.67	-0.8
1,593,393	-		CCNA_01486	0.67	-0.6
1,593,393	-		CCNA_01486	0.67	-1.4
1,593,393	-		CCNA_01486	0.67	+0.5
1,593,393	-		CCNA_01486	0.67	-0.6
1,593,416	-		CCNA_01486	0.70	-1.7
1,593,424	+		CCNA_01486	0.70	-1.4
1,593,424	+		CCNA_01486	0.70	-1.8
1,593,430	+		CCNA_01486	0.71	+0.7
1,593,432	-		CCNA_01486	0.71	-0.8
1,593,434	+		CCNA_01486	0.71	-1.2
1,593,434	+		CCNA_01486	0.71	-0.7
1,593,434	+		CCNA_01486	0.71	+0.2
1,593,434	+		CCNA_01486	0.71	-0.1
1,593,434	-		CCNA_01486	0.71	-1.6
1,593,448	-		CCNA_01486	0.73	+0.9
1,593,450	+		CCNA_01486	0.73	+0.4
1,593,463	-		CCNA_01486	0.74	-2.4
1,593,547	+		CCNA_01486	0.82	-1.0
1,593,548	+		CCNA_01486	0.83	-1.4
1,593,554	+		CCNA_01486	0.83	-0.5
1,593,567	-		CCNA_01486	0.84	-0.9
1,593,619	-		CCNA_01486	0.90	-1.2
1,593,633	+				+1.3
1,593,687	-				+0.9
1,593,703	-				-0.5
1,593,728	-				-1.2
1,593,778	-				+2.8
1,593,817	+				-1.0
1,593,817	+				+0.5
1,593,825	-				-0.7
1,593,825	-				-0.9
1,593,856	+				+1.7
1,593,877	-				+0.5
1,593,884	-				-0.4
1,593,899	+				+0.5
1,593,945	+				-1.0
1,593,947	+				-0.2
1,593,953	-				-0.8
1,594,021	-		CCNA_01487	0.17	-2.7
1,594,054	+		CCNA_01487	0.21	-1.0
1,594,117	+		CCNA_01487	0.29	+0.8
1,594,121	+		CCNA_01487	0.30	+0.3
1,594,125	-		CCNA_01487	0.31	-1.6
1,594,137	-		CCNA_01487	0.32	-0.8
1,594,139	+		CCNA_01487	0.32	+0.0
1,594,148	-				+2.3
1,594,191	+		CCNA_01487	0.39	+1.2
1,594,191	-		CCNA_01487	0.39	+1.2
1,594,251	-		CCNA_01487	0.47	+2.3
1,594,253	+		CCNA_01487	0.48	+0.7
1,594,253	+		CCNA_01487	0.48	-0.7
1,594,262	+		CCNA_01487	0.49	-2.1
1,594,337	+		CCNA_01487	0.59	+0.0
1,594,419	+		CCNA_01487	0.70	-0.7
1,594,433	+		CCNA_01487	0.72	-1.9
1,594,433	+		CCNA_01487	0.72	-0.5
1,594,433	+		CCNA_01487	0.72	-1.3
1,594,433	+		CCNA_01487	0.72	-0.4
1,594,433	+		CCNA_01487	0.72	-0.4
1,594,434	+		CCNA_01487	0.72	+0.2
1,594,464	+		CCNA_01487	0.76	-1.2
1,594,467	-		CCNA_01487	0.76	+0.2
1,594,469	+		CCNA_01487	0.77	+0.5
1,594,472	-		CCNA_01487	0.77	+0.5
1,594,482	-		CCNA_01487	0.78	+0.7
1,594,504	+		CCNA_01487	0.81	+0.5
1,594,569	+				-1.0
1,594,603	+				+0.9
1,594,607	+				-0.3
1,594,646	-				-0.6
1,594,646	-				-2.0
1,594,666	+				-0.1
1,594,686	+				+1.4
1,594,701	-				-0.7
1,594,701	-				-1.7