Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01383

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,499,337	-		CCNA_01382	0.49	-0.2
1,499,356	+		CCNA_01382	0.50	-0.2
1,499,387	-		CCNA_01382	0.51	+0.6
1,499,514	-		CCNA_01382	0.59	-0.2
1,499,516	+		CCNA_01382	0.59	-1.0
1,499,541	+		CCNA_01382	0.60	-0.2
1,499,590	+		CCNA_01382	0.63	-0.5
1,499,595	+		CCNA_01382	0.63	+0.9
1,499,601	+		CCNA_01382	0.64	-1.3
1,499,606	+		CCNA_01382	0.64	+1.5
1,499,609	-		CCNA_01382	0.64	-0.6
1,499,671	-		CCNA_01382	0.68	-1.5
1,499,699	-		CCNA_01382	0.69	+0.3
1,499,800	-		CCNA_01382	0.75	+0.8
1,499,825	+		CCNA_01382	0.76	-0.2
1,499,837	+		CCNA_01382	0.77	-1.2
1,499,837	+		CCNA_01382	0.77	-0.2
1,499,837	+		CCNA_01382	0.77	-0.8
1,499,845	-		CCNA_01382	0.78	-0.5
1,499,845	-		CCNA_01382	0.78	-0.9
1,499,845	-		CCNA_01382	0.78	+1.4
1,499,857	-		CCNA_01382	0.78	-0.2
1,499,859	+		CCNA_01382	0.78	+0.7
1,499,907	-		CCNA_01382	0.81	+1.4
1,499,930	+		CCNA_01382	0.82	+0.7
1,499,953	+		CCNA_01382	0.84	-1.1
1,499,969	+		CCNA_01382	0.85	-0.3
1,499,979	+		CCNA_01382	0.85	+0.2
1,500,024	-		CCNA_01382	0.88	-0.0
1,500,028	+		CCNA_01382	0.88	+0.7
1,500,036	-		CCNA_01382	0.88	-1.2
1,500,036	-		CCNA_01382	0.88	-0.8
1,500,068	-				-0.5
1,500,094	+				+0.1
1,500,102	-				-1.0
1,500,131	+				-0.4
1,500,145	+				+0.3
1,500,152	+				-0.2
1,500,157	+				+1.9
1,500,157	+				+1.9
1,500,157	+				+0.3
1,500,165	-				+1.2
1,500,171	-				-1.2
1,500,232	+				+1.1
1,500,233	+				+0.8
1,500,240	-				+0.7
1,500,241	-				-0.8
1,500,251	+				+0.9
1,500,251	+				+1.7
1,500,254	-				-1.2
1,500,254	-				-0.8
1,500,254	-				-2.5
1,500,254	-				-1.2
1,500,309	+		CCNA_01383	0.18	+0.1
1,500,309	+		CCNA_01383	0.18	-0.6
1,500,309	+		CCNA_01383	0.18	-0.2
1,500,309	+		CCNA_01383	0.18	-0.9
1,500,309	+		CCNA_01383	0.18	-1.3
1,500,309	+		CCNA_01383	0.18	-0.3
1,500,309	+		CCNA_01383	0.18	-0.5
1,500,317	-		CCNA_01383	0.20	-1.4
1,500,317	-		CCNA_01383	0.20	+0.1
1,500,317	-		CCNA_01383	0.20	+0.5
1,500,317	-		CCNA_01383	0.20	-0.3
1,500,317	-		CCNA_01383	0.20	-0.7
1,500,328	+		CCNA_01383	0.23	-0.1
1,500,334	+		CCNA_01383	0.25	+0.1
1,500,342	-		CCNA_01383	0.27	+0.1
1,500,371	-		CCNA_01383	0.35	-0.9
1,500,391	-		CCNA_01383	0.41	-0.0
1,500,401	-		CCNA_01383	0.44	-0.5
1,500,414	+		CCNA_01383	0.47	-0.6
1,500,416	-		CCNA_01383	0.48	-1.0
1,500,472	-		CCNA_01383	0.63	-0.3
1,500,491	-		CCNA_01383	0.68	-0.1
1,500,563	+		CCNA_01383	0.88	-0.4
1,500,565	+		CCNA_01383	0.89	-1.3
1,500,588	+				+1.2
1,500,630	+				+0.3
1,500,673	-				-0.5
1,500,681	+				-2.5
1,500,694	-				+0.7
1,500,698	+				-1.2
1,500,756	+				+0.9
1,500,756	+				+0.1
1,500,764	-				+1.3
1,500,785	-				+0.1
1,500,800	+				-1.5
1,500,837	-				+0.7
1,500,846	+				-0.9
1,500,878	-		CCNA_01384	0.12	+1.0
1,500,878	-		CCNA_01384	0.12	+0.8
1,500,944	-		CCNA_01384	0.16	+1.5
1,500,951	-		CCNA_01384	0.17	+1.7
1,500,966	-		CCNA_01384	0.18	+0.2
1,500,966	-		CCNA_01384	0.18	+1.0
1,500,986	+		CCNA_01384	0.19	+0.1
1,500,994	-		CCNA_01384	0.20	-0.2
1,501,002	+		CCNA_01384	0.20	-1.1
1,501,015	-		CCNA_01384	0.21	+0.4
1,501,021	+		CCNA_01384	0.22	-0.7
1,501,029	-		CCNA_01384	0.22	+0.7
1,501,044	+		CCNA_01384	0.23	-0.4
1,501,052	-		CCNA_01384	0.24	-1.1
1,501,052	-		CCNA_01384	0.24	+0.9
1,501,052	-		CCNA_01384	0.24	+0.7
1,501,078	+		CCNA_01384	0.25	-1.9
1,501,078	+		CCNA_01384	0.25	-1.3
1,501,085	-		CCNA_01384	0.26	-0.3
1,501,105	-		CCNA_01384	0.27	-0.9
1,501,105	-		CCNA_01384	0.27	+0.3
1,501,111	-		CCNA_01384	0.28	+1.7
1,501,112	-		CCNA_01384	0.28	+0.7
1,501,147	+		CCNA_01384	0.30	-0.3
1,501,167	+		CCNA_01384	0.31	-0.3
1,501,167	-		CCNA_01384	0.31	-0.4
1,501,191	+		CCNA_01384	0.33	-0.3
1,501,198	+		CCNA_01384	0.34	-0.1
1,501,206	-		CCNA_01384	0.34	+0.5
1,501,295	-		CCNA_01384	0.40	+0.4
1,501,295	-		CCNA_01384	0.40	-1.3
1,501,296	+		CCNA_01384	0.40	+1.0
1,501,327	+		CCNA_01384	0.42	-1.5
1,501,359	-		CCNA_01384	0.44	-1.4
1,501,359	-		CCNA_01384	0.44	+1.7
1,501,360	-		CCNA_01384	0.44	+0.3
1,501,439	+		CCNA_01384	0.50	+0.2
1,501,461	+		CCNA_01384	0.51	-1.5
1,501,463	+		CCNA_01384	0.51	-0.5
1,501,495	-		CCNA_01384	0.53	-1.0
1,501,495	-		CCNA_01384	0.53	-1.3
1,501,512	+		CCNA_01384	0.55	-0.1
1,501,512	+		CCNA_01384	0.55	-0.8
1,501,520	-		CCNA_01384	0.55	+1.8
1,501,538	+		CCNA_01384	0.56	+0.0
1,501,543	+		CCNA_01384	0.57	-0.9