Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01272

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,398,030	+				-0.4
1,398,040	+				-1.0
1,398,059	+				-1.2
1,398,060	+				-0.7
1,398,060	+				-0.8
1,398,060	+				-0.1
1,398,066	+				-1.0
1,398,097	+				+1.7
1,398,105	-				-0.8
1,398,124	-				-0.0
1,398,200	+		CCNA_01270	0.42	-0.8
1,398,208	-		CCNA_01270	0.46	+0.3
1,398,208	-		CCNA_01270	0.46	+0.2
1,398,240	+		CCNA_01270	0.61	+0.2
1,398,254	-		CCNA_01270	0.68	-0.8
1,398,293	+		CCNA_01270	0.86	+0.3
1,398,293	+		CCNA_01270	0.86	+1.4
1,398,360	-				-0.7
1,398,361	+				+1.3
1,398,369	-				-0.5
1,398,384	-				-1.5
1,398,424	+				-0.4
1,398,424	+				+0.1
1,398,432	-				-1.2
1,398,432	-				-0.6
1,398,469	+				-1.7
1,398,483	+				+0.6
1,398,506	+				+0.4
1,398,506	+				-0.3
1,398,506	+				-1.5
1,398,506	+				+1.0
1,398,506	-				-0.5
1,398,523	+				+1.3
1,398,536	+		CCNA_01271	0.12	+2.1
1,398,558	+		CCNA_01271	0.16	+1.9
1,398,702	+		CCNA_01271	0.43	+0.8
1,398,707	+		CCNA_01271	0.44	+0.6
1,398,707	+		CCNA_01271	0.44	+1.0
1,398,707	+		CCNA_01271	0.44	-1.4
1,398,707	+		CCNA_01271	0.44	+0.9
1,398,707	+		CCNA_01271	0.44	-0.1
1,398,707	+		CCNA_01271	0.44	-2.2
1,398,707	+		CCNA_01271	0.44	-0.3
1,398,707	+		CCNA_01271	0.44	+0.5
1,398,707	+		CCNA_01271	0.44	+0.1
1,398,707	+		CCNA_01271	0.44	-1.1
1,398,710	-		CCNA_01271	0.45	-1.4
1,398,715	-		CCNA_01271	0.46	-0.7
1,398,715	-		CCNA_01271	0.46	-1.3
1,398,715	-		CCNA_01271	0.46	+0.5
1,398,715	-		CCNA_01271	0.46	-1.9
1,398,715	-		CCNA_01271	0.46	-0.0
1,398,715	-		CCNA_01271	0.46	+0.5
1,398,715	-		CCNA_01271	0.46	-1.1
1,398,715	-		CCNA_01271	0.46	+0.7
1,398,818	+		CCNA_01271	0.65	-0.4
1,398,826	-		CCNA_01271	0.67	-1.1
1,398,862	+		CCNA_01271	0.73	-0.0
1,398,882	-		CCNA_01271	0.77	+0.3
1,398,903	+		CCNA_01271	0.81	+0.2
1,398,928	-				+3.1
1,399,005	-				-1.8
1,399,005	-				-1.0
1,399,042	+				+1.3
1,399,050	-				+0.2
1,399,063	+		CCNA_01272	0.12	+1.8
1,399,120	+		CCNA_01272	0.25	+1.6
1,399,120	+		CCNA_01272	0.25	+0.7
1,399,120	+		CCNA_01272	0.25	+0.3
1,399,164	+		CCNA_01272	0.35	-0.2
1,399,223	-		CCNA_01272	0.49	-0.7
1,399,225	+		CCNA_01272	0.50	-0.9
1,399,230	+		CCNA_01272	0.51	+0.7
1,399,238	-				+3.7
1,399,238	-		CCNA_01272	0.53	+0.8
1,399,254	-		CCNA_01272	0.56	+1.0
1,399,269	+		CCNA_01272	0.60	-0.3
1,399,307	+				+1.7
1,399,327	-		CCNA_01272	0.73	+0.3
1,399,390	+		CCNA_01272	0.88	-0.6
1,399,431	-				-1.0
1,399,469	+				+1.1
1,399,469	+				-2.3
1,399,522	+		CCNA_01273	0.16	+0.5
1,399,551	+		CCNA_01273	0.23	-0.6
1,399,588	+		CCNA_01273	0.31	-0.9
1,399,588	+		CCNA_01273	0.31	-0.5
1,399,596	-		CCNA_01273	0.32	+0.2
1,399,596	-		CCNA_01273	0.32	-0.1
1,399,596	-		CCNA_01273	0.32	+0.7
1,399,596	-		CCNA_01273	0.32	-0.5
1,399,596	-		CCNA_01273	0.32	+0.7
1,399,601	-		CCNA_01273	0.33	-0.4
1,399,601	-		CCNA_01273	0.33	-0.4
1,399,663	-		CCNA_01273	0.47	-0.6
1,399,677	+		CCNA_01273	0.50	-0.8
1,399,695	+		CCNA_01273	0.54	-0.3
1,399,713	-		CCNA_01273	0.58	+1.1
1,399,743	+		CCNA_01273	0.64	-1.7
1,399,751	-		CCNA_01273	0.66	+2.2
1,399,752	-		CCNA_01273	0.66	+0.9
1,399,768	-		CCNA_01273	0.69	+0.4
1,399,768	-		CCNA_01273	0.69	-2.0
1,399,823	-		CCNA_01273	0.81	-0.0
1,399,857	-		CCNA_01273	0.89	+0.9
1,399,879	-				+0.9
1,399,894	-				+0.8
1,399,925	-				+0.6
1,399,925	-				-0.4
1,399,925	-				-0.7
1,399,936	-				-0.5
1,400,015	-				+0.7
1,400,032	+				-1.8
1,400,032	+				-2.0
1,400,035	-				+1.0
1,400,040	-				+1.2
1,400,075	+				+0.1
1,400,090	+				-0.1
1,400,098	-				+0.9
1,400,098	-				-1.0
1,400,115	+				-2.1
1,400,122	-				-1.1
1,400,152	-				+0.9
1,400,262	-		CCNA_01274	0.12	-1.1
1,400,301	+		CCNA_01274	0.14	-1.5
1,400,326	-		CCNA_01274	0.16	+0.8
1,400,328	-		CCNA_01274	0.16	+0.4
1,400,348	-		CCNA_01274	0.17	-0.6
1,400,354	-		CCNA_01274	0.18	-1.1
1,400,391	+		CCNA_01274	0.20	-0.9
1,400,399	-		CCNA_01274	0.21	-0.5
1,400,442	+		CCNA_01274	0.23	-0.4