Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01149

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,250,371	-				-1.3
1,250,374	+				-0.1
1,250,471	-				-0.1
1,250,539	-				+0.1
1,250,546	+				-0.5
1,250,553	+				+0.7
1,250,554	+				+0.4
1,250,578	-				-0.4
1,250,584	-				+0.1
1,250,599	+				+0.7
1,250,609	+		CCNA_01147	0.10	+0.9
1,250,679	+		CCNA_01147	0.23	-1.1
1,250,704	+		CCNA_01147	0.27	-1.1
1,250,754	-		CCNA_01147	0.36	+0.7
1,250,756	+		CCNA_01147	0.37	+1.1
1,250,792	+		CCNA_01147	0.43	-1.3
1,250,792	+		CCNA_01147	0.43	-1.8
1,250,802	+		CCNA_01147	0.45	-1.1
1,250,847	+		CCNA_01147	0.53	-0.5
1,250,847	-		CCNA_01147	0.53	+0.8
1,250,853	+		CCNA_01147	0.54	+1.4
1,250,855	-		CCNA_01147	0.55	-1.0
1,250,878	+		CCNA_01147	0.59	-1.1
1,250,896	-		CCNA_01147	0.62	-0.2
1,250,908	+		CCNA_01147	0.64	-1.6
1,250,916	-		CCNA_01147	0.66	-1.3
1,250,916	-		CCNA_01147	0.66	+1.7
1,250,918	+		CCNA_01147	0.66	-0.4
1,250,969	-		CCNA_01147	0.76	-0.9
1,251,033	-		CCNA_01147	0.87	-0.0
1,251,039	+		CCNA_01147	0.88	-2.9
1,251,039	+		CCNA_01147	0.88	-0.5
1,251,039	+		CCNA_01147	0.88	-0.8
1,251,045	-		CCNA_01147	0.89	-1.0
1,251,047	-		CCNA_01147	0.90	-1.7
1,251,060	+				-1.1
1,251,128	-				+0.4
1,251,204	+				-0.5
1,251,204	+				+1.9
1,251,204	+				+1.3
1,251,209	-				-1.2
1,251,211	+		CCNA_01148	0.11	-0.3
1,251,212	-		CCNA_01148	0.11	+0.5
1,251,212	-		CCNA_01148	0.11	-0.7
1,251,220	+		CCNA_01148	0.16	-1.6
1,251,221	+		CCNA_01148	0.16	-0.1
1,251,221	+		CCNA_01148	0.16	-1.0
1,251,221	+		CCNA_01148	0.16	+1.5
1,251,221	+		CCNA_01148	0.16	+1.2
1,251,228	-		CCNA_01148	0.20	-3.0
1,251,228	-		CCNA_01148	0.20	-1.2
1,251,228	-		CCNA_01148	0.20	-0.2
1,251,229	-		CCNA_01148	0.21	+2.1
1,251,229	-		CCNA_01148	0.21	-2.6
1,251,231	+		CCNA_01148	0.22	-1.1
1,251,231	+		CCNA_01148	0.22	+0.7
1,251,231	+		CCNA_01148	0.22	-0.6
1,251,238	+		CCNA_01148	0.26	-0.9
1,251,239	-		CCNA_01148	0.27	-0.9
1,251,269	-		CCNA_01148	0.44	+1.4
1,251,269	-		CCNA_01148	0.44	-0.6
1,251,269	-		CCNA_01148	0.44	+0.7
1,251,281	-		CCNA_01148	0.50	+1.0
1,251,331	-		CCNA_01148	0.79	-0.4
1,251,348	+		CCNA_01148	0.88	-1.3
1,251,365	-				-0.6
1,251,369	+				+1.4
1,251,377	-				-0.4
1,251,377	-				+1.3
1,251,485	-				+0.4
1,251,486	-				-0.3
1,251,581	+				+0.7
1,251,589	-				+0.2
1,251,627	+				-0.8
1,251,651	+		CCNA_01149	0.11	-0.1
1,251,651	+		CCNA_01149	0.11	+0.9
1,251,651	+		CCNA_01149	0.11	+0.4
1,251,651	+		CCNA_01149	0.11	-0.9
1,251,651	+		CCNA_01149	0.11	-0.8
1,251,659	-		CCNA_01149	0.11	-0.8
1,251,659	-		CCNA_01149	0.11	-0.4
1,251,659	-		CCNA_01149	0.11	+1.0
1,251,659	-		CCNA_01149	0.11	+0.2
1,251,725	-		CCNA_01149	0.13	-1.1
1,251,728	+		CCNA_01149	0.14	+0.9
1,251,796	+		CCNA_01149	0.16	-0.8
1,251,802	+		CCNA_01149	0.16	-0.8
1,251,816	+		CCNA_01149	0.17	-1.9
1,251,850	+		CCNA_01149	0.18	-0.8
1,251,899	-		CCNA_01149	0.20	+0.1
1,251,899	-		CCNA_01149	0.20	+0.9
1,251,933	-		CCNA_01149	0.21	-0.0
1,251,935	+		CCNA_01149	0.21	-1.0
1,251,935	+		CCNA_01149	0.21	-0.1
1,251,940	+		CCNA_01149	0.22	-0.8
1,251,943	-		CCNA_01149	0.22	+1.4
1,251,943	-		CCNA_01149	0.22	-0.0
1,251,943	-		CCNA_01149	0.22	-0.2
1,251,945	+		CCNA_01149	0.22	-0.1
1,251,945	+		CCNA_01149	0.22	-2.2
1,251,968	+		CCNA_01149	0.23	-1.2
1,251,973	+		CCNA_01149	0.23	-0.9
1,251,981	+		CCNA_01149	0.23	+0.7
1,251,981	+		CCNA_01149	0.23	+0.5
1,251,981	+		CCNA_01149	0.23	-2.0
1,251,986	+		CCNA_01149	0.23	-0.4
1,251,989	-		CCNA_01149	0.23	+0.1
1,251,989	-		CCNA_01149	0.23	-1.3
1,252,069	+		CCNA_01149	0.26	-1.9
1,252,131	+		CCNA_01149	0.29	-2.0
1,252,131	+		CCNA_01149	0.29	+0.7
1,252,141	+		CCNA_01149	0.29	-1.6
1,252,141	+		CCNA_01149	0.29	-0.8
1,252,171	-		CCNA_01149	0.30	-1.1
1,252,184	-		CCNA_01149	0.31	-2.7
1,252,195	+		CCNA_01149	0.31	-0.0
1,252,204	-		CCNA_01149	0.32	-1.3
1,252,230	-		CCNA_01149	0.33	+0.2
1,252,264	+		CCNA_01149	0.34	+0.4
1,252,281	-		CCNA_01149	0.35	-0.0
1,252,306	+		CCNA_01149	0.35	+0.4
1,252,394	-		CCNA_01149	0.39	-1.0
1,252,406	-		CCNA_01149	0.39	+0.1
1,252,413	+		CCNA_01149	0.40	-0.1
1,252,423	-		CCNA_01149	0.40	-1.5
1,252,461	+		CCNA_01149	0.41	-0.6
1,252,469	+		CCNA_01149	0.42	+1.3
1,252,469	-		CCNA_01149	0.42	+2.3
1,252,472	-		CCNA_01149	0.42	+0.0
1,252,474	+		CCNA_01149	0.42	-1.4
1,252,474	+		CCNA_01149	0.42	+0.7
1,252,518	+		CCNA_01149	0.43	-0.1
1,252,523	+		CCNA_01149	0.44	-0.9
1,252,523	+		CCNA_01149	0.44	+0.5
1,252,531	-		CCNA_01149	0.44	+0.7
1,252,531	-		CCNA_01149	0.44	+0.4
1,252,546	+		CCNA_01149	0.45	-0.8
1,252,546	-		CCNA_01149	0.45	-0.5
1,252,571	-		CCNA_01149	0.46	-0.6
1,252,592	+		CCNA_01149	0.46	-0.0
1,252,592	-		CCNA_01149	0.46	-1.9
1,252,600	+		CCNA_01149	0.47	+0.4
1,252,600	+		CCNA_01149	0.47	-2.6
1,252,619	-		CCNA_01149	0.47	-1.4
1,252,624	-		CCNA_01149	0.48	-1.0
1,252,624	-		CCNA_01149	0.48	-0.7
1,252,624	-		CCNA_01149	0.48	-0.3
1,252,656	-		CCNA_01149	0.49	-0.9
1,252,696	+		CCNA_01149	0.50	-0.6
1,252,706	+		CCNA_01149	0.51	-1.4
1,252,712	+		CCNA_01149	0.51	-0.4
1,252,735	-		CCNA_01149	0.52	-0.3
1,252,761	+		CCNA_01149	0.53	-0.0
1,252,769	-		CCNA_01149	0.53	+0.4
1,252,817	-		CCNA_01149	0.55	-2.0
1,252,826	+		CCNA_01149	0.55	+2.0
1,252,853	-		CCNA_01149	0.56	+0.1
1,252,873	+		CCNA_01149	0.57	-1.9
1,252,873	+		CCNA_01149	0.57	+0.1
1,252,873	+		CCNA_01149	0.57	-2.6
1,252,873	+		CCNA_01149	0.57	+0.1
1,252,873	+		CCNA_01149	0.57	-0.1
1,252,878	+		CCNA_01149	0.57	-0.3
1,252,881	-		CCNA_01149	0.57	+0.4
1,252,881	-		CCNA_01149	0.57	-0.9
1,252,885	+		CCNA_01149	0.57	+0.6
1,252,893	-		CCNA_01149	0.58	+0.2
1,252,895	+		CCNA_01149	0.58	+1.4
1,252,901	+		CCNA_01149	0.58	+0.1
1,252,901	+		CCNA_01149	0.58	-1.8
1,252,910	-		CCNA_01149	0.58	+0.2
1,252,917	+		CCNA_01149	0.59	-0.6
1,252,954	+		CCNA_01149	0.60	+0.5
1,252,954	+		CCNA_01149	0.60	-1.9
1,252,962	-		CCNA_01149	0.60	-1.3
1,252,972	+		CCNA_01149	0.61	-0.0
1,253,017	+		CCNA_01149	0.62	-1.3
1,253,060	+		CCNA_01149	0.64	-0.6
1,253,068	-		CCNA_01149	0.64	+0.1
1,253,068	-		CCNA_01149	0.64	+0.1
1,253,096	+		CCNA_01149	0.65	-1.5
1,253,096	+		CCNA_01149	0.65	+0.1
1,253,104	-		CCNA_01149	0.66	-0.2
1,253,104	-		CCNA_01149	0.66	+0.9
1,253,177	+		CCNA_01149	0.68	-0.1
1,253,177	+		CCNA_01149	0.68	-1.6
1,253,190	+		CCNA_01149	0.69	+1.2
1,253,232	-		CCNA_01149	0.71	+0.4
1,253,266	-		CCNA_01149	0.72	-0.1
1,253,302	+		CCNA_01149	0.73	+0.1
1,253,303	+		CCNA_01149	0.73	+0.4
1,253,315	+		CCNA_01149	0.74	-0.4
1,253,333	+		CCNA_01149	0.74	+0.9
1,253,333	+		CCNA_01149	0.74	-1.0
1,253,336	-		CCNA_01149	0.75	-0.7
1,253,341	+		CCNA_01149	0.75	-0.8
1,253,359	+		CCNA_01149	0.75	-0.6
1,253,367	-		CCNA_01149	0.76	+0.1
1,253,373	-		CCNA_01149	0.76	-1.1
1,253,375	+		CCNA_01149	0.76	-1.6
1,253,383	+		CCNA_01149	0.76	-2.3
1,253,383	-		CCNA_01149	0.76	-0.3
1,253,413	-		CCNA_01149	0.77	-0.1
1,253,424	+		CCNA_01149	0.78	-1.1
1,253,500	-		CCNA_01149	0.81	+2.0
1,253,536	+		CCNA_01149	0.82	+1.8
1,253,557	-		CCNA_01149	0.83	-0.0
1,253,562	+		CCNA_01149	0.83	-0.3
1,253,577	-		CCNA_01149	0.84	-0.5
1,253,625	-		CCNA_01149	0.85	-1.5
1,253,628	+		CCNA_01149	0.86	-0.9
1,253,641	-		CCNA_01149	0.86	-0.8
1,253,659	-		CCNA_01149	0.87	+0.2
1,253,677	+		CCNA_01149	0.87	-0.8
1,253,686	-		CCNA_01149	0.88	-1.4
1,253,718	+		CCNA_01149	0.89	+0.5
1,253,726	-		CCNA_01149	0.89	-0.8
1,253,726	-		CCNA_01149	0.89	+0.1
1,253,728	+				+1.7
1,253,728	+		CCNA_01149	0.89	-1.5
1,253,736	-		CCNA_01149	0.90	-0.9
1,253,738	+		CCNA_01149	0.90	-0.9
1,253,759	+				+0.7
1,253,816	+				-1.2
1,253,816	+				+1.9
1,253,816	+				+1.1
1,253,816	+				-1.5
1,253,816	+				-0.1
1,253,816	+				-1.4
1,253,816	+				-0.7
1,253,816	+				+0.5
1,253,816	+				-1.2
1,253,816	+				-0.5
1,253,816	+				+0.5
1,253,816	+				-0.2
1,253,816	+				-0.2
1,253,824	-				-2.6
1,253,824	-				-2.6
1,253,824	-				+0.5
1,253,824	-				-0.3
1,253,824	-				-2.5
1,253,824	-				-0.1
1,253,824	-				-0.1
1,253,824	-				-1.9
1,253,824	-				-0.6
1,253,824	-				-0.1
1,253,861	+				-1.3
1,253,869	-				+0.4
1,253,891	+				+0.4
1,253,899	-				+2.1
1,253,899	-				+2.4
1,253,899	-				-0.5
1,253,899	-				-1.3
1,253,996	-				-2.5
1,254,102	+				+0.2
1,254,197	+				-0.5
1,254,205	-				+0.7
1,254,205	-				+0.2
1,254,226	+				+3.7
1,254,231	+				+1.7
1,254,294	-				-0.5
1,254,299	+				-1.2
1,254,362	-		CCNA_03891	0.21	-0.8
1,254,412	+		CCNA_03891	0.35	-0.2
1,254,420	-		CCNA_03891	0.37	+0.5
1,254,439	-		CCNA_03891	0.43	+2.6
1,254,440	+		CCNA_03891	0.43	-2.6
1,254,452	+		CCNA_03891	0.46	-0.9
1,254,458	+		CCNA_03891	0.48	-0.3
1,254,546	+		CCNA_03891	0.73	-0.5
1,254,576	-		CCNA_03891	0.82	-0.1
1,254,578	+		CCNA_03891	0.82	+0.4
1,254,578	+		CCNA_03891	0.82	-0.5
1,254,586	-		CCNA_03891	0.85	+0.1
1,254,593	+		CCNA_03891	0.87	-0.8
1,254,593	+		CCNA_03891	0.87	+1.3
1,254,593	+		CCNA_03891	0.87	-1.5
1,254,634	+				+0.7
1,254,664	-				-0.6
1,254,682	-				-0.1
1,254,810	+				+0.2
1,254,810	+				+1.0
1,254,827	+		CCNA_01151	0.11	-0.3
1,254,832	+		CCNA_01151	0.11	+0.7
1,254,832	+		CCNA_01151	0.11	+1.1
1,254,832	+		CCNA_01151	0.11	-0.1
1,254,854	+		CCNA_01151	0.14	+1.0
1,254,901	-		CCNA_01151	0.18	-2.0
1,254,919	+		CCNA_01151	0.20	+1.4
1,254,924	+		CCNA_01151	0.21	+1.1
1,254,960	+		CCNA_01151	0.24	+2.1