Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01077

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,180,007	-		CCNA_01075	0.38	+0.0
1,180,022	+		CCNA_01075	0.41	-0.2
1,180,030	-		CCNA_01075	0.43	+0.8
1,180,160	+		CCNA_01075	0.75	-1.9
1,180,160	+		CCNA_01075	0.75	+0.7
1,180,160	+		CCNA_01075	0.75	-1.4
1,180,175	-		CCNA_01075	0.78	-0.2
1,180,194	+		CCNA_01075	0.83	+0.2
1,180,202	-		CCNA_01075	0.85	+0.7
1,180,202	-		CCNA_01075	0.85	-1.3
1,180,202	-		CCNA_01075	0.85	+1.5
1,180,208	-				+1.7
1,180,350	-		CCNA_01076	0.12	+0.2
1,180,389	+		CCNA_01076	0.18	-0.7
1,180,462	+		CCNA_01076	0.30	+0.9
1,180,462	+		CCNA_01076	0.30	+1.1
1,180,470	-		CCNA_01076	0.32	+0.5
1,180,585	+		CCNA_01076	0.50	-0.6
1,180,590	+		CCNA_01076	0.51	-1.6
1,180,594	-		CCNA_01076	0.52	+0.7
1,180,642	+		CCNA_01076	0.60	+0.4
1,180,650	-		CCNA_01076	0.61	+0.1
1,180,650	-		CCNA_01076	0.61	+0.4
1,180,675	+		CCNA_01076	0.65	-0.8
1,180,675	+		CCNA_01076	0.65	+1.1
1,180,700	+		CCNA_01076	0.69	-0.2
1,180,708	-		CCNA_01076	0.71	-0.2
1,180,712	+		CCNA_01076	0.71	-1.1
1,180,712	+		CCNA_01076	0.71	+0.5
1,180,712	+		CCNA_01076	0.71	-0.2
1,180,712	+		CCNA_01076	0.71	+0.5
1,180,720	-		CCNA_01076	0.73	-0.6
1,180,756	+		CCNA_01076	0.78	+0.1
1,180,756	+		CCNA_01076	0.78	-0.6
1,180,812	-		CCNA_01076	0.88	-0.2
1,180,833	-				-0.9
1,180,833	-				+1.2
1,180,834	-				-0.4
1,180,834	-				-0.3
1,180,854	-				-1.8
1,180,884	-				-1.3
1,180,884	-				+1.5
1,180,884	-				-1.2
1,180,885	-				-0.1
1,180,891	-				-0.2
1,180,898	+				-2.2
1,180,905	+				-0.6
1,180,958	+				-1.0
1,180,958	+				+0.4
1,180,961	+				-0.2
1,180,969	-				-0.3
1,180,971	-				-1.1
1,180,971	-				-1.1
1,180,998	+				+0.2
1,181,000	-				+0.2
1,181,006	-				+0.3
1,181,006	-				-1.5
1,181,006	-				-0.3
1,181,010	+				-0.4
1,181,021	+				-1.7
1,181,036	-				-0.3
1,181,048	-				-0.8
1,181,074	+				+0.9
1,181,074	+				-1.1
1,181,079	+				-0.0
1,181,087	-				-0.5
1,181,130	-				+0.7
1,181,153	-				-0.9
1,181,156	+				-1.2
1,181,163	-				-0.5
1,181,189	-		CCNA_01077	0.10	-0.3
1,181,221	-		CCNA_01077	0.12	+0.9
1,181,225	+		CCNA_01077	0.12	+1.1
1,181,228	-		CCNA_01077	0.12	+1.7
1,181,235	+		CCNA_01077	0.12	-0.7
1,181,235	+		CCNA_01077	0.12	-1.2
1,181,236	+		CCNA_01077	0.13	-0.0
1,181,243	+		CCNA_01077	0.13	-0.8
1,181,298	+		CCNA_01077	0.15	-1.1
1,181,313	+		CCNA_01077	0.16	-0.2
1,181,343	+		CCNA_01077	0.18	-1.4
1,181,345	+		CCNA_01077	0.18	+0.7
1,181,432	+		CCNA_01077	0.22	-1.1
1,181,440	-		CCNA_01077	0.22	+1.0
1,181,458	+		CCNA_01077	0.23	-0.2
1,181,478	-		CCNA_01077	0.24	-0.7
1,181,478	-		CCNA_01077	0.24	-1.2
1,181,489	+		CCNA_01077	0.25	+1.4
1,181,496	+		CCNA_01077	0.25	-0.4
1,181,497	-		CCNA_01077	0.25	-0.4
1,181,504	-		CCNA_01077	0.25	+0.4
1,181,506	+		CCNA_01077	0.25	+0.4
1,181,509	-		CCNA_01077	0.25	-1.0
1,181,511	+		CCNA_01077	0.26	+0.4
1,181,514	-		CCNA_01077	0.26	-1.3
1,181,537	-		CCNA_01077	0.27	-0.1
1,181,548	+		CCNA_01077	0.27	-1.3
1,181,568	-		CCNA_01077	0.28	+1.0
1,181,579	+		CCNA_01077	0.29	-1.4
1,181,678	-		CCNA_01077	0.34	-1.5
1,181,691	-		CCNA_01077	0.34	-0.6
1,181,709	+		CCNA_01077	0.35	-0.4
1,181,709	+		CCNA_01077	0.35	-1.0
1,181,709	+		CCNA_01077	0.35	-1.0
1,181,709	+		CCNA_01077	0.35	+0.7
1,181,744	-		CCNA_01077	0.37	+0.2
1,181,765	+		CCNA_01077	0.38	+0.5
1,181,792	-		CCNA_01077	0.39	-0.6
1,181,792	-		CCNA_01077	0.39	+0.9
1,181,799	-		CCNA_01077	0.39	-0.5
1,181,828	+		CCNA_01077	0.41	+1.7
1,181,833	+		CCNA_01077	0.41	+0.8
1,181,841	-		CCNA_01077	0.41	-0.6
1,181,859	+		CCNA_01077	0.42	+1.2
1,181,900	+		CCNA_01077	0.44	-2.6
1,181,918	-		CCNA_01077	0.45	+0.7
1,181,926	-		CCNA_01077	0.45	+0.1
1,181,941	-		CCNA_01077	0.46	-0.4
1,181,948	-		CCNA_01077	0.46	-0.2
1,181,953	-		CCNA_01077	0.47	-1.7
1,181,995	-		CCNA_01077	0.49	+0.2
1,181,995	-		CCNA_01077	0.49	+0.1
1,181,995	-		CCNA_01077	0.49	-0.1
1,182,016	-		CCNA_01077	0.50	-1.0
1,182,030	+		CCNA_01077	0.50	-0.3
1,182,038	+		CCNA_01077	0.51	-1.2
1,182,038	-		CCNA_01077	0.51	-0.4
1,182,086	+		CCNA_01077	0.53	+0.1
1,182,086	+		CCNA_01077	0.53	-0.7
1,182,086	+		CCNA_01077	0.53	-1.0
1,182,092	-		CCNA_01077	0.53	+0.1
1,182,094	-		CCNA_01077	0.53	-0.2
1,182,099	-		CCNA_01077	0.54	+1.0
1,182,113	+		CCNA_01077	0.54	+0.8
1,182,120	+		CCNA_01077	0.55	+0.4
1,182,120	+		CCNA_01077	0.55	+0.4
1,182,120	+		CCNA_01077	0.55	+0.5
1,182,120	+		CCNA_01077	0.55	+1.2
1,182,128	-		CCNA_01077	0.55	-0.3
1,182,128	-		CCNA_01077	0.55	+0.1
1,182,128	-		CCNA_01077	0.55	-0.8
1,182,128	-		CCNA_01077	0.55	-1.2
1,182,139	+		CCNA_01077	0.55	-0.6
1,182,144	+		CCNA_01077	0.56	-0.8
1,182,152	-		CCNA_01077	0.56	+1.7
1,182,166	+		CCNA_01077	0.57	-0.3
1,182,166	+		CCNA_01077	0.57	-1.6
1,182,166	+		CCNA_01077	0.57	-2.1
1,182,174	-		CCNA_01077	0.57	+0.4
1,182,174	-		CCNA_01077	0.57	-1.6
1,182,174	-		CCNA_01077	0.57	-0.7
1,182,174	-		CCNA_01077	0.57	+0.8
1,182,174	-		CCNA_01077	0.57	-0.8
1,182,179	-		CCNA_01077	0.57	-1.2
1,182,220	-		CCNA_01077	0.59	-0.8
1,182,239	+		CCNA_01077	0.60	-0.6
1,182,244	+		CCNA_01077	0.60	-1.2
1,182,279	+		CCNA_01077	0.62	-1.1
1,182,285	+		CCNA_01077	0.62	-0.8
1,182,288	-		CCNA_01077	0.63	-0.0
1,182,290	+		CCNA_01077	0.63	-1.1
1,182,295	+		CCNA_01077	0.63	+3.1
1,182,298	-		CCNA_01077	0.63	-0.2
1,182,359	+		CCNA_01077	0.66	+0.4
1,182,359	+		CCNA_01077	0.66	-0.6
1,182,359	+		CCNA_01077	0.66	-1.8
1,182,362	-		CCNA_01077	0.66	+0.2
1,182,368	+		CCNA_01077	0.66	-0.6
1,182,376	-		CCNA_01077	0.67	+0.1
1,182,376	-		CCNA_01077	0.67	-2.6
1,182,376	-		CCNA_01077	0.67	-1.4
1,182,381	+		CCNA_01077	0.67	-0.1
1,182,389	-		CCNA_01077	0.67	+1.0
1,182,402	-		CCNA_01077	0.68	-2.6
1,182,404	+		CCNA_01077	0.68	-1.1
1,182,404	+		CCNA_01077	0.68	+1.1
1,182,405	+		CCNA_01077	0.68	-1.8
1,182,405	+		CCNA_01077	0.68	-0.9
1,182,405	+		CCNA_01077	0.68	-0.5
1,182,405	+		CCNA_01077	0.68	+1.1
1,182,405	+		CCNA_01077	0.68	-0.3
1,182,405	+		CCNA_01077	0.68	-0.7
1,182,405	+		CCNA_01077	0.68	-0.1
1,182,405	+		CCNA_01077	0.68	-0.4
1,182,405	+		CCNA_01077	0.68	+0.5
1,182,405	+		CCNA_01077	0.68	-1.3
1,182,405	+		CCNA_01077	0.68	+0.7
1,182,405	+		CCNA_01077	0.68	-1.3
1,182,405	+		CCNA_01077	0.68	-0.0
1,182,405	+		CCNA_01077	0.68	+0.1
1,182,405	+		CCNA_01077	0.68	-0.7
1,182,413	-		CCNA_01077	0.68	+0.5
1,182,413	-		CCNA_01077	0.68	-0.9
1,182,413	-		CCNA_01077	0.68	-0.6
1,182,413	-		CCNA_01077	0.68	-0.2
1,182,413	-		CCNA_01077	0.68	-0.9
1,182,413	-		CCNA_01077	0.68	-2.1
1,182,413	-		CCNA_01077	0.68	-0.6
1,182,413	-		CCNA_01077	0.68	-0.6
1,182,413	-		CCNA_01077	0.68	-2.4
1,182,413	-		CCNA_01077	0.68	-1.5
1,182,413	-		CCNA_01077	0.68	+0.1
1,182,413	-		CCNA_01077	0.68	-0.8
1,182,418	-		CCNA_01077	0.69	-1.9
1,182,428	-		CCNA_01077	0.69	+0.2
1,182,428	-				+0.5
1,182,428	-		CCNA_01077	0.69	-0.0
1,182,428	-		CCNA_01077	0.69	-0.9
1,182,436	+		CCNA_01077	0.70	+1.7
1,182,470	+		CCNA_01077	0.71	+0.5
1,182,470	+		CCNA_01077	0.71	-1.5
1,182,470	+		CCNA_01077	0.71	-1.4
1,182,477	+		CCNA_01077	0.72	-2.1
1,182,478	-		CCNA_01077	0.72	+0.5
1,182,478	-		CCNA_01077	0.72	-0.9
1,182,496	-		CCNA_01077	0.72	-0.4
1,182,510	-		CCNA_01077	0.73	+0.7
1,182,562	+		CCNA_01077	0.76	-1.3
1,182,565	-		CCNA_01077	0.76	-0.8
1,182,623	-		CCNA_01077	0.78	-0.8
1,182,657	-		CCNA_01077	0.80	-1.2
1,182,663	+		CCNA_01077	0.80	-2.0
1,182,671	-		CCNA_01077	0.81	-0.8
1,182,671	-		CCNA_01077	0.81	-0.8
1,182,677	-		CCNA_01077	0.81	+1.7
1,182,688	+		CCNA_01077	0.82	-1.1
1,182,688	+		CCNA_01077	0.82	+0.4
1,182,705	+		CCNA_01077	0.82	-1.7
1,182,713	-		CCNA_01077	0.83	-2.7
1,182,713	-		CCNA_01077	0.83	-0.4
1,182,713	-		CCNA_01077	0.83	+1.5
1,182,713	-		CCNA_01077	0.83	+0.2
1,182,716	+		CCNA_01077	0.83	-0.8
1,182,724	-		CCNA_01077	0.83	+1.4
1,182,732	+		CCNA_01077	0.84	+0.3
1,182,748	+		CCNA_01077	0.84	-0.8
1,182,751	+		CCNA_01077	0.85	-0.8
1,182,756	-		CCNA_01077	0.85	-1.5
1,182,796	-		CCNA_01077	0.87	-0.3
1,182,836	-		CCNA_01077	0.89	-1.5
1,182,840	+		CCNA_01077	0.89	-0.8
1,182,850	+		CCNA_01077	0.89	+0.7
1,182,858	-		CCNA_01077	0.90	-0.9
1,182,860	-		CCNA_01077	0.90	-2.3
1,182,893	-				+0.1
1,182,936	+				-2.1
1,182,936	+				-0.5
1,182,942	+				-1.2
1,182,942	-				-1.0
1,182,942	-				+0.7
1,182,944	-				+1.4
1,182,944	-				+0.9
1,182,944	-				+1.4
1,182,944	-				+0.2
1,182,944	-				-1.0
1,182,944	-				-0.9
1,182,950	-				+1.9
1,182,969	-				+0.5
1,183,012	+				-2.5
1,183,021	-				-0.4
1,183,021	-				-1.2
1,183,033	-				-0.7
1,183,034	-				-0.6
1,183,063	+				-0.7
1,183,064	+				+0.6
1,183,064	+				-0.9
1,183,071	-				+2.1
1,183,104	+				+0.7
1,183,104	+				+0.2
1,183,113	-				+0.4
1,183,221	+				-0.8
1,183,221	+				-0.5
1,183,222	+				+1.2
1,183,222	+				-1.0
1,183,229	-				-0.8
1,183,257	+				-1.7
1,183,257	+				-2.8
1,183,263	+				-0.1
1,183,285	-				-0.9
1,183,344	-		CCNA_01078	0.14	+2.1
1,183,354	-		CCNA_01078	0.15	-1.8
1,183,414	+		CCNA_01078	0.23	+1.2
1,183,423	-		CCNA_01078	0.24	+0.1
1,183,423	-		CCNA_01078	0.24	+0.4
1,183,423	-		CCNA_01078	0.24	+1.2
1,183,423	-		CCNA_01078	0.24	-1.5
1,183,441	+		CCNA_01078	0.27	-0.2
1,183,494	+		CCNA_01078	0.34	-0.2
1,183,505	+		CCNA_01078	0.35	+0.5
1,183,505	+		CCNA_01078	0.35	-0.9
1,183,513	-		CCNA_01078	0.36	-2.5
1,183,513	-		CCNA_01078	0.36	+0.6
1,183,538	-		CCNA_01078	0.40	+1.1
1,183,586	+		CCNA_01078	0.46	+0.9
1,183,592	+		CCNA_01078	0.47	-0.5
1,183,592	+		CCNA_01078	0.47	-2.6
1,183,600	-		CCNA_01078	0.48	-0.4
1,183,600	-		CCNA_01078	0.48	-1.1
1,183,621	+		CCNA_01078	0.51	-0.4
1,183,621	+		CCNA_01078	0.51	-1.2
1,183,621	+		CCNA_01078	0.51	-0.0
1,183,621	+		CCNA_01078	0.51	+2.3
1,183,629	-		CCNA_01078	0.52	+1.1
1,183,629	-		CCNA_01078	0.52	+0.4
1,183,629	-		CCNA_01078	0.52	-0.6
1,183,629	-		CCNA_01078	0.52	-1.0
1,183,667	-		CCNA_01078	0.57	-1.4
1,183,675	+		CCNA_01078	0.58	-0.3
1,183,682	+		CCNA_01078	0.59	-0.0
1,183,690	-		CCNA_01078	0.60	+0.4
1,183,715	+		CCNA_01078	0.63	-0.4
1,183,723	-		CCNA_01078	0.64	-0.6
1,183,749	+		CCNA_01078	0.68	-1.0
1,183,761	-		CCNA_01078	0.69	-2.3
1,183,844	+		CCNA_01078	0.80	-0.5
1,183,907	-		CCNA_01078	0.89	+0.5
1,183,927	+				-2.5
1,183,946	+				-0.4
1,183,981	+				-0.9
1,184,002	-				-0.9
1,184,030	+				+0.9
1,184,030	+				-0.5
1,184,032	-		CCNA_01079	0.10	+0.2
1,184,038	-		CCNA_01079	0.14	-0.9
1,184,038	-		CCNA_01079	0.14	+2.1
1,184,038	-		CCNA_01079	0.14	+0.3
1,184,038	-		CCNA_01079	0.14	+0.8
1,184,057	+		CCNA_01079	0.24	-1.2
1,184,073	-		CCNA_01079	0.33	-0.2