Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00981

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,059,642	+		CCNA_00980	0.20	+0.0
1,059,645	-		CCNA_00980	0.21	+1.4
1,059,646	-		CCNA_00980	0.21	-1.2
1,059,710	-		CCNA_00980	0.26	-0.2
1,059,759	-		CCNA_00980	0.30	+1.0
1,059,857	-		CCNA_00980	0.38	-2.0
1,059,872	+		CCNA_00980	0.40	-1.4
1,059,874	+		CCNA_00980	0.40	-2.5
1,059,874	+		CCNA_00980	0.40	+0.1
1,059,899	+		CCNA_00980	0.42	-1.7
1,059,900	+		CCNA_00980	0.42	-2.2
1,059,912	-		CCNA_00980	0.43	-0.9
1,059,925	-		CCNA_00980	0.44	-0.5
1,059,926	+		CCNA_00980	0.44	+0.6
1,059,931	+		CCNA_00980	0.44	+0.3
1,059,934	-		CCNA_00980	0.45	-0.4
1,059,939	-		CCNA_00980	0.45	+0.3
1,059,939	-				+0.9
1,059,948	+		CCNA_00980	0.46	-0.5
1,059,974	+		CCNA_00980	0.48	-0.4
1,059,989	+		CCNA_00980	0.49	-0.8
1,059,999	+		CCNA_00980	0.50	-0.9
1,060,007	-		CCNA_00980	0.51	-0.3
1,060,043	-		CCNA_00980	0.54	-0.8
1,060,043	-		CCNA_00980	0.54	-0.1
1,060,057	+		CCNA_00980	0.55	-1.4
1,060,057	+		CCNA_00980	0.55	-1.0
1,060,057	+		CCNA_00980	0.55	-0.5
1,060,057	+		CCNA_00980	0.55	-0.4
1,060,057	+		CCNA_00980	0.55	-0.9
1,060,065	-		CCNA_00980	0.56	+1.1
1,060,065	-		CCNA_00980	0.56	+0.1
1,060,079	-		CCNA_00980	0.57	+1.6
1,060,150	-		CCNA_00980	0.63	-1.1
1,060,176	-		CCNA_00980	0.65	-1.2
1,060,191	+		CCNA_00980	0.66	-1.1
1,060,199	-		CCNA_00980	0.67	+0.7
1,060,200	+		CCNA_00980	0.67	+0.7
1,060,205	+		CCNA_00980	0.67	+2.1
1,060,205	+		CCNA_00980	0.67	+0.1
1,060,213	-		CCNA_00980	0.68	+0.5
1,060,213	-		CCNA_00980	0.68	+0.8
1,060,223	+		CCNA_00980	0.69	-0.4
1,060,264	-		CCNA_00980	0.72	-2.0
1,060,277	-		CCNA_00980	0.73	-1.6
1,060,277	-		CCNA_00980	0.73	-2.4
1,060,277	-		CCNA_00980	0.73	+0.6
1,060,277	-		CCNA_00980	0.73	-0.4
1,060,277	-		CCNA_00980	0.73	+0.0
1,060,277	-		CCNA_00980	0.73	-0.5
1,060,277	-		CCNA_00980	0.73	-0.5
1,060,279	-		CCNA_00980	0.73	-0.4
1,060,279	-		CCNA_00980	0.73	+0.0
1,060,292	-		CCNA_00980	0.74	-1.8
1,060,303	+		CCNA_00980	0.75	-0.6
1,060,303	+		CCNA_00980	0.75	-0.9
1,060,303	+		CCNA_00980	0.75	-1.4
1,060,303	+		CCNA_00980	0.75	-0.7
1,060,307	-		CCNA_00980	0.76	+1.1
1,060,311	-		CCNA_00980	0.76	+0.1
1,060,320	+		CCNA_00980	0.77	-1.7
1,060,370	+		CCNA_00980	0.81	-0.6
1,060,378	-		CCNA_00980	0.82	-0.6
1,060,384	+		CCNA_00980	0.82	-1.5
1,060,392	-		CCNA_00980	0.83	+0.0
1,060,392	-		CCNA_00980	0.83	+0.9
1,060,421	-		CCNA_00980	0.85	-0.4
1,060,426	+		CCNA_00980	0.85	+0.5
1,060,474	-		CCNA_00980	0.89	+0.1
1,060,502	-				+0.5
1,060,506	+				-0.5
1,060,520	+				+0.4
1,060,523	-				+1.1
1,060,523	-				+0.7
1,060,525	+				-0.6
1,060,539	+				+0.0
1,060,547	-				-1.2
1,060,547	-				+0.4
1,060,562	+				-0.5
1,060,599	+				-0.7
1,060,689	+		CCNA_00981	0.13	-0.1
1,060,689	+		CCNA_00981	0.13	-1.8
1,060,689	+		CCNA_00981	0.13	+0.0
1,060,697	-		CCNA_00981	0.14	+0.1
1,060,760	+		CCNA_00981	0.23	-0.6
1,060,804	-		CCNA_00981	0.29	+0.4
1,060,810	+		CCNA_00981	0.30	+0.3
1,060,825	+		CCNA_00981	0.32	+1.1
1,060,842	+		CCNA_00981	0.35	+1.1
1,060,850	-		CCNA_00981	0.36	-0.6
1,060,885	+		CCNA_00981	0.41	-1.3
1,060,991	+		CCNA_00981	0.56	+0.0
1,061,031	+		CCNA_00981	0.62	-0.4
1,061,031	+		CCNA_00981	0.62	-1.0
1,061,031	+		CCNA_00981	0.62	-1.0
1,061,039	-		CCNA_00981	0.63	-0.2
1,061,039	-		CCNA_00981	0.63	+0.4
1,061,039	-		CCNA_00981	0.63	-1.7
1,061,039	-		CCNA_00981	0.63	+0.3
1,061,042	+		CCNA_00981	0.63	+0.0
1,061,042	+		CCNA_00981	0.63	+0.4
1,061,050	-		CCNA_00981	0.64	-0.4
1,061,079	-		CCNA_00981	0.68	-1.7
1,061,079	-		CCNA_00981	0.68	+0.1
1,061,089	+		CCNA_00981	0.70	+1.1
1,061,092	-		CCNA_00981	0.70	-1.2
1,061,097	-		CCNA_00981	0.71	-0.6
1,061,102	-		CCNA_00981	0.72	-0.6
1,061,189	-		CCNA_00981	0.84	-1.3
1,061,191	+		CCNA_00981	0.84	-0.3
1,061,214	-		CCNA_00981	0.88	-1.1
1,061,214	-		CCNA_00981	0.88	-0.2
1,061,237	-				+0.5
1,061,267	+				-0.7
1,061,314	-				+0.5
1,061,331	-				+0.4
1,061,341	+				-1.1
1,061,433	-				-0.5
1,061,434	+				-1.8
1,061,571	+				-0.4
1,061,725	-		CCNA_00982	0.24	-0.7
1,061,725	-		CCNA_00982	0.24	-0.8
1,061,739	-		CCNA_00982	0.27	-1.1
1,061,770	+		CCNA_00982	0.34	+0.3
1,061,783	+		CCNA_00982	0.38	-0.7
1,061,783	+		CCNA_00982	0.38	+0.3
1,061,783	+		CCNA_00982	0.38	+0.8
1,061,788	+		CCNA_00982	0.39	+0.2
1,061,791	-		CCNA_00982	0.39	+0.8
1,061,799	+		CCNA_00982	0.41	-0.9
1,061,801	-		CCNA_00982	0.42	+0.4
1,061,834	+		CCNA_00982	0.49	+0.1
1,061,834	+		CCNA_00982	0.49	+0.5
1,061,847	-		CCNA_00982	0.52	-0.9
1,061,847	-		CCNA_00982	0.52	-0.8
1,061,847	-		CCNA_00982	0.52	-0.7
1,061,849	+		CCNA_00982	0.53	+0.7
1,061,855	+		CCNA_00982	0.54	+1.0
1,061,856	+		CCNA_00982	0.55	+1.3
1,061,863	-		CCNA_00982	0.56	-0.7
1,061,864	-		CCNA_00982	0.56	-0.9
1,061,865	+		CCNA_00982	0.57	+0.0
1,061,872	+		CCNA_00982	0.58	+1.3
1,061,880	-		CCNA_00982	0.60	+1.0
1,061,880	-		CCNA_00982	0.60	-1.8
1,061,891	+		CCNA_00982	0.63	+0.4
1,061,891	+		CCNA_00982	0.63	+1.0
1,061,893	+		CCNA_00982	0.63	+1.3
1,061,899	-		CCNA_00982	0.65	-1.4
1,061,920	+		CCNA_00982	0.69	+1.3
1,061,925	+		CCNA_00982	0.71	+0.6
1,061,930	+		CCNA_00982	0.72	+1.1
1,061,930	+		CCNA_00982	0.72	+0.3
1,061,936	+		CCNA_00982	0.73	+0.8
1,061,983	-		CCNA_00982	0.84	-0.4
1,061,992	-		CCNA_00982	0.86	-1.3
1,061,992	-		CCNA_00982	0.86	-1.8
1,062,006	-		CCNA_00982	0.90	-0.9
1,062,028	-				-1.2
1,062,052	-				-0.2
1,062,053	+				+0.9
1,062,110	+				-0.9
1,062,127	-				+1.0
1,062,153	+				+0.7
1,062,161	-				-0.3
1,062,161	-				-0.8
1,062,161	-				-0.0
1,062,168	+				-0.1
1,062,172	-				-2.0
1,062,176	-				-1.4
1,062,176	-				-1.4
1,062,196	-				+0.7
1,062,218	+				-1.2
1,062,235	+				+2.0
1,062,259	+				-0.3
1,062,267	-				-0.3
1,062,268	-				-0.8
1,062,276	+				-0.9